TCONS_00008009-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008009-protein
Unique Name	TCONS_00008009-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	408

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008009-protein ID=TCONS_00008009-protein|Name=TCONS_00008009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MGKEKGGFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSE
AHQRQLLLFAENPNKYLDSFSQDFYDDFVTLLKRRFGTKRVHCNIIYQEY
VAERDHTHMNATQWETLTEFVKWLGREGHCTVDETPKGWFVTYIDKDPEV
IARQKAAQSQERKELDDQERMAKFIEKQVERAKATTGDQEESKFTELQRE
DESEKVTFDFGKPGSSKSSSSKTSSSKTSSSSLEKKSISIADKSGIFKNS
EKEKSSKGKSKETTKRKSALDEILEEENALKKKKLKEVKKENWLTEGIVV
KIITKKLGDKYYKQKCVIKEVKNLFIAVVEVLNSGDVIKLDQMHLETVLP
GPGRPLKVVNGEHRGCNAEMIGLNQGKFTASVKLTSGPQKGITVKLPYEE
ICKVPSGS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004513	XLOC_004513	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008009	TCONS_00008009	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019447	DNA/RNA-bd_Kin17_cons_domain
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 266..291
None	No IPR available	COILS	Coil	Coil	coord: 158..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..269
None	No IPR available	CDD	cd13155	KOW_KIN17	coord: 352..404 e-value: 3.80412E-19 score: 79.5025
IPR019447	DNA/RNA-binding protein Kin17, conserved domain	SMART	SM01253	Kin17_mid_2	coord: 54..180 e-value: 3.9E-86 score: 302.2
IPR019447	DNA/RNA-binding protein Kin17, conserved domain	PFAM	PF10357	Kin17_mid	coord: 54..179 e-value: 4.7E-49 score: 165.4
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 28..70

Blast

[Close]

BLAST of TCONS_00008009-protein vs. Swiss-Prot (Human)
Match: KIN17 (DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2)

HSP 1 Score: 414.846 bits (1065), Expect = 6.557e-144
Identity = 209/401 (52.12%), Postives = 291/401 (72.57%), Query Frame = 0

Query:    5 KGGFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSEAHQRQLLLFAENPNKYLDSFSQDFYDDFVTLLKRRFGTKRVHCNIIYQEYVAERDHTHMNATQWETLTEFVKWLGREGHCTVDETPKGWFVTYIDKDPEVIARQKAAQSQERKELDDQERMAKFIEKQVERAKATTGDQEESKFTELQREDESEKVTFDFGKPGSSKSSSSKTSSSKTSSSSLEKKSISIADKSGIFKNSEKEKSSKGKSKETTKRKSALDEILEEENALKKKKLKEVKKENWLTEGIVVKIITKKLGDKYYKQKCVIKEVKNLFIAVVEVLNSGDVIKLDQMHLETVLPGPGRPLKVVNGEHRGCNAEMIGLNQGKFTASVKLTSGPQKGITVK-LPYEEICKV 404
            K  FLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSE+HQRQLLL +ENP +++D FS++F +DF+ LL+RRFGTKRVH NI+Y EY++ R+H HMNATQWETLT+F KWLGREG C VDETPKGW++ YID+DPE I RQ   + +++++LDD+E+ AKFIE+QV R      +QE   FTEL RE++ EKVTF+      SK + S + ++ + SS+L   ++     S   K  E  +SS    ++  K+ +     L+E   ++++K +  + + WL   I+VKIITKKLG+KY+K+K ++KEV + + AVV++++SGD +KLDQ HLETV+P PG+ + V+NG +RG    +  +N+  F+A++ + +GP KG  V+ + YE+I K+
Sbjct:    3 KSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRG-LEGKEQEVPTFTELSRENDEEKVTFNL-----SKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSA-----LDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKL 392

The following BLAST results are available for this feature:

BLAST of TCONS_00008009-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008009-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KIN17	6.557e-144	52.12	DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=K...	[more]

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TCONS_00008009-protein (polypeptide) - C. hemisphaerica