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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008009 ID=TCONS_00008009|Name=TCONS_00008009|organism=Clytia hemisphaerica|type=transcript|length=1768bpRun BLAST on NCBI protein sequence of TCONS_00008009-protein >TCONS_00008009-protein ID=TCONS_00008009-protein|Name=TCONS_00008009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp MGKEKGGFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSERun BLAST on NCBI transcript from alignment at sc0000081:574482..582667+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008009 ID=TCONS_00008009|Name=TCONS_00008009|organism=Clytia hemisphaerica|type=transcript|length=8186bp|location=Sequence derived from alignment at sc0000081:574482..582667+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000081:574482..582667+ >TCONS_00008009 ID=TCONS_00008009|Name=TCONS_00008009|organism=Clytia hemisphaerica|type=CDS|length=1227bp|location=Sequence derived from alignment at sc0000081:574482..582667+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008009 vs. Swiss-Prot (Human)
Match: KIN17 (DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2) HSP 1 Score: 314.309 bits (804), Expect = 1.691e-100 Identity = 141/208 (67.79%), Postives = 172/208 (82.69%), Query Frame = 2
Query: 77 KGGFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSEAHQRQLLLFAENPNKYLDSFSQDFYDDFVTLLKRRFGTKRVHCNIIYQEYVAERDHTHMNATQWETLTEFVKWLGREGHCTVDETPKGWFVTYIDKDPEVIARQKAAQSQERKELDDQERMAKFIEKQVERAKATTGDQEESKFTELQREDESEKVTFDFGK 700
K FLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSE+HQRQLLL +ENP +++D FS++F +DF+ LL+RRFGTKRVH NI+Y EY++ R+H HMNATQWETLT+F KWLGREG C VDETPKGW++ YID+DPE I RQ + +++++LDD+E+ AKFIE+QV R +QE FTEL RE++ EKVTF+ K
Sbjct: 3 KSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRG-LEGKEQEVPTFTELSRENDEEKVTFNLSK 209 HSP 2 Score: 115.161 bits (287), Expect = 1.231e-27 Identity = 54/113 (47.79%), Postives = 84/113 (74.34%), Query Frame = 2
Query: 941 WLTEGIVVKIITKKLGDKYYKQKCVIKEVKNLFIAVVEVLNSGDVIKLDQMHLETVLPGPGRPLKVVNGEHRGCNAEMIGLNQGKFTASVKLTSGPQKGITVK-LPYEEICKV 1276
WL I+VKIITKKLG+KY+K+K ++KEV + + AVV++++SGD +KLDQ HLETV+P PG+ + V+NG +RG + +N+ F+A++ + +GP KG V+ + YE+I K+
Sbjct: 280 WLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKL 392 The following BLAST results are available for this feature:
BLAST of TCONS_00008009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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