TCONS_00008313-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008313-protein
Unique Name	TCONS_00008313-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	507

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008313-protein ID=TCONS_00008313-protein|Name=TCONS_00008313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp
MFSHLQDINSTGYLWMFFFGGVLDVLLSSGITFGWAGIVYIFKMELFFID
LCPLSIQQSALTSLLDNTSNKTILQERSRFKHGFPGCIEQDSRLQLIFTV
AMFVQSVTLFFSGILVDRYGPKMIRGIGFAIYMFGCFGLAFMNRDNANLL
FLVFTLIMIGSQFLVMAVYQSTNIIFRRFRGAATSIMFGAFDSSAVVLLL
FKIIYQSGFSLKLITFCYCIIVFIISNLMTIVLIPPQHVLRKWTQEEMES
LSEKSRISETSLEHSKNEKTPLVPAEKMKKKDSLRSHICSPFYILHVFYL
SVFQLKLWYYVGTLPDDLTQLSNYDNEKVSDYIDIFGYCQFGGLLVSPVL
AFILDKDKLLGKSSKTQGPVSQFERTRNCVPVFAVTTILCIIFCIANSLP
VLKIQVLSFLVYMIVRAFLYGSHGVFIGAAFPAKDYGTLFGIGMLVAAAT
GALQYPLFEIRSRLMGNQPLGVQLIIFGLVICACVHPIHVYWRTRDTEKN
RQRFETS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004669	XLOC_004669	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008313	TCONS_00008313	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 92..453 e-value: 4.9E-17 score: 61.8
None	No IPR available	GENE3D	1.20.1250.20		coord: 277..507 e-value: 7.7E-10 score: 37.8
None	No IPR available	GENE3D	1.20.1250.20		coord: 25..251 e-value: 7.9E-12 score: 44.4
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 91..236 e-value: 6.13068E-5 score: 42.6861
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 94..498

Blast

[Close]

BLAST of TCONS_00008313-protein vs. Swiss-Prot (Human)
Match: S43A3 (Solute carrier family 43 member 3 OS=Homo sapiens GN=SLC43A3 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.462e-61
Identity = 143/495 (28.89%), Postives = 247/495 (49.90%), Query Frame = 0

Query:   21 GVLDVLLSSGITFGWAGIVYIFKMELFFIDLCPLSIQQSALTSLLDNTSNKTILQERSRFKHGFPGCIEQDSRLQLIFTVAMFVQSVTLFFSGILVDRYGPKMIRGIGFAIYMFGCFGLAFMNRDNANLLFLVFTLIMIGSQFLVMAVYQSTNIIFRRFRGAATSIMFGAFDSSAVVLLLFKIIYQSGFSLKLITFCYCIIVFIISNLMTIVLIPPQHVL--------------RKWTQEEMESLSEKSRISETSLEHSKNEKTPLVPAEKMKKKDSLRSHICSPFYILHVFYLSVFQLKLWYYVGTLPDDLTQLSNYDNEKVSDYIDIFGYCQFGGLLVSPVLAFILDKDKL-LGKSSKTQGPVSQFERTRNCVPVFAVTTILCIIFCIANSLPVLKIQVLSFLVYMIVRAFLYGSHGVFIGAAFPAKDYGTLFGIGMLVAAATGALQYPLFEIRSRLMGNQPLGVQLIIFGLVICACVHPIHVYWRTRDTEKN 500
            G+L+ L  +G+ FGW  +V++FK E +F DLC            + N + +               C  QD R  LIFT+  F+ +   F +G + DR+   + R I    Y      +AF +  +A LLFL   ++ IG    ++   Q  N+ F + R    ++  GAFDSS+ V L+ K++Y+ G SL+  +F +  +        T +L+P  H+                  T+EE E+   ++R  ++    S  E+TP   A + ++  S  S+  S  +  H+ +LSV QL  + ++GTL   LT ++  D  +VS Y + F + QFG +L +P    ++D+ K    K ++  G  +      + VP  A+T++LC+ F +  S+P+L +Q L+F++ +I R+FLYGS+  F+  AFP++ +G LFG+ M ++A    LQ+P+F +    + N P  V ++    ++    HP  VY   R  +++
Sbjct:   16 GLLECLGFAGVLFGWPSLVFVFKNEDYFKDLC------GPDAGPIGNATGQA-------------DCKAQDERFSLIFTLGSFMNNFMTFPTGYIFDRFKTTVARLIAIFFYTTATLIIAFTSAGSAVLLFLAMPMLTIGGILFLITNLQIGNL-FGQHRSTIITLYNGAFDSSSAVFLIIKLLYEKGISLR-ASFIFISVCSTWHVARTFLLMPRGHIPYPLPPNYSYGLCPGNGTTKEEKETAEHENRELQSKEFLSAKEETP--GAGQKQELRSFWSYAFSRRFAWHLVWLSVIQLWHYLFIGTLNSLLTNMAGGDMARVSTYTNAFAFTQFG-VLCAPWNGLLMDRLKQKYQKEARKTGSSTLAVALCSTVPSLALTSLLCLGFALCASVPILPLQYLTFILQVISRSFLYGSNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLIKGSLQNDPFYVNVMFMLAILLTFFHPFLVYRECRTWKES 486

The following BLAST results are available for this feature:

BLAST of TCONS_00008313-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008313-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S43A3	2.462e-61	28.89	Solute carrier family 43 member 3 OS=Homo sapiens ...	[more]

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TCONS_00008313-protein (polypeptide) - C. hemisphaerica