TCONS_00008585-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008585-protein
Unique Name	TCONS_00008585-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	825

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008585-protein ID=TCONS_00008585-protein|Name=TCONS_00008585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=825bp
MKNFLRTLIDRENFTSQINKQDILEILERKTAEKSTENKAYRSIGSARST
FVISFSPDRTKIATSHGDHTIKISECSSCKVIHTLTGHIRTPWCVVFHPR
HNSILASGCLGGQVRLWNLKYLPNKNNVVYRSQSVVASLSFHPVDDVLVI
CSSNKILFFNWNSQTMMQTISTKNHTETIRLVRFLPLGDKLLTGIANTSK
QYCKPHCLNVSRTGGYSGQARYSGQGVVETVSCMRIQRRNSETTDQPTCS
KRLKLDTSGASASTTNESCCKQERGQCKCREFDPQFQGQNSTKLERANIS
LERKRFQTGRSMGVQTDPEDLRASGMATVSTSSNVMDDTINNSSDYEADG
DSENEAHSDNEAQSETEAQSETEAQSENETQSEDESVNEAQSDYEPMSRD
ESENEAESGNEADSGQSEVEVAEESNEEEQEDDESENEQSTNQQPNHFHP
SSYSSHTLAPPTATAIIENPPSGYLPLTENLPNIVRTLSNSSTGRQVRSE
IWNFTLGDVSNSQSGMVDEEGSGSHSSQSTNVTTDLGISVESATSSIPVH
GFVSIPSTRHSASISNLGNVPIQRAVATATARSSHHVHTAVVIASEEDEQ
SEVALQTAVTRAIAGAFAGSGEAAVANNIIDTTHRLQLWDSNLPKPPDIA
NKDRNVVVPYCKIHNDSSIDVSQDGTLVGVFVPSEYGFPVDAQLKIVSLQ
PSNFGQCVYSRKYGPNAVSISFSPLNRYVLIGLASRKLHWQITDHQLIGQ
VLNVPSNGKKILSDISKPLFNVRHISNRTQRSNVSVNSIKFHPTPGVGII
YGTNRGHIQHCFIRPPPFIDQDAKT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004803	XLOC_004803	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008585	TCONS_00008585	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 412..439
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 512..531
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 302..458
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 123..160 e-value: 19.0 score: 8.9 coord: 78..118 e-value: 4.0E-7 score: 39.7 coord: 36..75 e-value: 5.2 score: 12.5
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 85..120 score: 8.771
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 10..233 e-value: 4.4E-28 score: 97.4
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 494..821 e-value: 0.0017 score: 16.9
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 43..194 score: 13.316
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 50..197

Blast

[Close]

BLAST of TCONS_00008585-protein vs. Swiss-Prot (Human)
Match: AMRA1 (Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.807e-48
Identity = 90/218 (41.28%), Postives = 139/218 (63.76%), Query Frame = 0

Query:  597 EDEQSEVALQTAVTRAIAGAFAGSGEAAVANNIIDTTHRLQLWDSNLPKPPDIANKDRNVVVPYCKIHNDSSIDVSQDGTLVGVFVP-SEYGFPVDAQLKIVSLQPSNFGQCVYSRKYGPNAVSISFSPLNRYVLIGLASRKLHWQITDHQLIGQVLNV--PSNGKKILSDISKPLFNVRHISNRTQRSNVSVNSIKFHPTPGVGIIYGTNRGHIQHC 811
            E  Q  +A  ++V R +AGA  G G++AVA+NI +TT+RLQ WD      P+I+N   NV+V  CKI+ND+S D+S DG L+  F+P S+ GFP +  L + SL P N G+ +Y++++GPNA+S+S SP+ RYV++GLASR++    +   ++ QV  +     G+  +  +    FNV +     QR +VS+NS ++ P PG+G+ YGTN+G +  C
Sbjct:  823 ERGQPGLATHSSVNRVLAGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNASVNVLVQNCKIYNDASCDISADGQLLAAFIPSSQRGFPDEGILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGRYVMVGLASRRILLHPSTEHMVAQVFRLQQAHGGETSMRRV----FNVLYPMPADQRRHVSINSARWLPEPGLGLAYGTNKGDLVIC 1036

HSP 2 Score: 174.096 bits (440), Expect = 1.440e-44
Identity = 86/206 (41.75%), Postives = 124/206 (60.19%), Query Frame = 0

Query:    2 KNFLRTLIDRENFTSQINKQDIL-EILERKTAEKSTENKAYRSIGSARSTFVISFSPDRTKIATSHGDHTIKISECSSCKVIHTLTGHIRTPWCVVFHPRHNSILASGCLGGQVRLWNL-----KYLPNKNNVVYRSQSVVASLSFHPVDDVLVICSSNKILFFNWNSQTMMQTISTKNHTETIRLVRFLPLGDKLLTGIANTSKQ 201
            KN +R L  RE     +  Q +L E++E KT     E K      S RSTF+++FSPDRT +A++H +H I I+E  + K +H+L GH RTPWCV FHP  + ++ASGCL G+VR+W+L      +  + NN        +ASL+FHP   +L+I ++N+I F++W+ +     + T +  E +RLVRF PLG  LLT I N S Q
Sbjct:    7 KNAVRILWGRERGARAMGAQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNN-------AIASLAFHPTAQLLLIATANEIHFWDWSRREPFAVVKTASEMERVRLVRFDPLGHYLLTAIVNPSNQ 205

The following BLAST results are available for this feature:

BLAST of TCONS_00008585-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008585-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AMRA1	1.807e-48	41.28	Activating molecule in BECN1-regulated autophagy p...	[more]

You are here

TCONS_00008585-protein (polypeptide) - C. hemisphaerica