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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008585 ID=TCONS_00008585|Name=TCONS_00008585|organism=Clytia hemisphaerica|type=transcript|length=3832bpRun BLAST on NCBI protein sequence of TCONS_00008585-protein >TCONS_00008585-protein ID=TCONS_00008585-protein|Name=TCONS_00008585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=825bp MKNFLRTLIDRENFTSQINKQDILEILERKTAEKSTENKAYRSIGSARSTRun BLAST on NCBI transcript from alignment at sc0000086:866406..884303+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008585 ID=TCONS_00008585|Name=TCONS_00008585|organism=Clytia hemisphaerica|type=transcript|length=17898bp|location=Sequence derived from alignment at sc0000086:866406..884303+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000086:866406..884303+ >TCONS_00008585 ID=TCONS_00008585|Name=TCONS_00008585|organism=Clytia hemisphaerica|type=CDS|length=2478bp|location=Sequence derived from alignment at sc0000086:866406..884303+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008585 vs. Swiss-Prot (Human)
Match: AMRA1 (Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 2.844e-47 Identity = 90/218 (41.28%), Postives = 139/218 (63.76%), Query Frame = 3
Query: 1869 EDEQSEVALQTAVTRAIAGAFAGSGEAAVANNIIDTTHRLQLWDSNLPKPPDIANKDRNVVVPYCKIHNDSSIDVSQDGTLVGVFVP-SEYGFPVDAQLKIVSLQPSNFGQCVYSRKYGPNAVSISFSPLNRYVLIGLASRKLHWQITDHQLIGQVLNVPS--NGKKILSDISKPLFNVRHISNRTQRSNVSVNSIKFHPTPGVGIIYGTNRGHIQHC 2513
E Q +A ++V R +AGA G G++AVA+NI +TT+RLQ WD P+I+N NV+V CKI+ND+S D+S DG L+ F+P S+ GFP + L + SL P N G+ +Y++++GPNA+S+S SP+ RYV++GLASR++ + ++ QV + G+ + + FNV + QR +VS+NS ++ P PG+G+ YGTN+G + C
Sbjct: 823 ERGQPGLATHSSVNRVLAGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNASVNVLVQNCKIYNDASCDISADGQLLAAFIPSSQRGFPDEGILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGRYVMVGLASRRILLHPSTEHMVAQVFRLQQAHGGETSMRRV----FNVLYPMPADQRRHVSINSARWLPEPGLGLAYGTNKGDLVIC 1036 HSP 2 Score: 174.096 bits (440), Expect = 8.573e-44 Identity = 86/210 (40.95%), Postives = 126/210 (60.00%), Query Frame = 3
Query: 72 ILKMKNFLRTLIDRENFTSQINKQDIL-EILERKTAEKSTENKAYRSIGSARSTFVISFSPDRTKIATSHGDHTIKISECSSCKVIHTLTGHIRTPWCVVFHPRHNSILASGCLGGQVRLWNL-----KYLPNKNNVVYRSQSVVASLSFHPVDDVLVICSSNKILFFNWNSQTMMQTISTKNHTETIRLVRFLPLGDKLLTGIANTSKQ 683
++ KN +R L RE + Q +L E++E KT E K S RSTF+++FSPDRT +A++H +H I I+E + K +H+L GH RTPWCV FHP + ++ASGCL G+VR+W+L + + NN +ASL+FHP +L+I ++N+I F++W+ + + T + E +RLVRF PLG LLT I N S Q
Sbjct: 3 VVPEKNAVRILWGRERGARAMGAQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNN-------AIASLAFHPTAQLLLIATANEIHFWDWSRREPFAVVKTASEMERVRLVRFDPLGHYLLTAIVNPSNQ 205 The following BLAST results are available for this feature:
BLAST of TCONS_00008585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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