TCONS_00008700-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008700-protein
Unique Name	TCONS_00008700-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	596

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008700-protein ID=TCONS_00008700-protein|Name=TCONS_00008700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=596bp
VVFQRPTDWYLSSRNRKEMNKTKFGSLLLLLQGILLILFVVFVDYGDDFK
PNIKNENRKDFNQKLPAFQDLHIMVFLGFGLIMTFLKRYSRGMLVHAFLI
GGLVIQWATLLQGFFSMRQSKVELTLDRMINADYAVLVVLVSLGALIGKV
NSLQLLIIALIETIFFAINESLCKQLLQISDFGQSMTVHLFGAIFGIAIS
RMIFDKRVCTSQALSTSNKSEMYSMIGTLFLWIYFPSLNSAFVEEDSAHR
RAIANTYYALAASCITSFSLTVLQSPDHRYNILHLQNATITGGIAIGSVA
ALMVRPWGAIILGVLASLISILTYKYILPKLRRRFNIHDVRGVYATHGMP
GIVSGLAAVVCAFLATEEHYGTSLYQLYPARVPSSNTTKYQDLIKIHPEI
PASQGRSAYIQGAYQFGGLIVTVILALIGGLISGASIRVKFFEPLTAHDA
FDDHADFQESTCIDVYTDDDFEDDGERHHDSIRGNKRLYDLNQRHPSDDV
ISGDGIPQMTSYISGRQTPSSVRHSYHSISAKSSDGVIKGSQELPVDDNE
NVKGSKVNLGSNGDMRPVQNGGIEMTPLIVVADNSDGDDDGTAATS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004888	XLOC_004888	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008700	TCONS_00008700	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002229	RhesusRHD
IPR024041	NH4_transpt_AmtB-like_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008519	ammonium transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015696	ammonium transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015696	ammonium transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0008519	ammonium transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002229	Blood group Rhesus C/E/D polypeptide	PRINTS	PR00342	RHESUSRHD	coord: 23..41 score: 25.15 coord: 154..177 score: 25.93 coord: 310..328 score: 39.77 coord: 348..364 score: 27.45 coord: 65..82 score: 43.21 coord: 131..147 score: 39.54 coord: 287..300 score: 45.24 coord: 222..240 score: 57.89 coord: 252..274 score: 49.03 coord: 94..111 score: 29.94 coord: 188..203 score: 34.38
None	No IPR available	GENE3D	1.10.3430.10		coord: 51..451 e-value: 1.7E-71 score: 240.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 530..570
IPR024041	Ammonium transporter AmtB-like domain	PFAM	PF00909	Ammonium_transp	coord: 56..436 e-value: 5.4E-57 score: 193.2
IPR024041	Ammonium transporter AmtB-like domain	SUPERFAMILY	111352	Ammonium transporter	coord: 65..366

Blast

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BLAST of TCONS_00008700-protein vs. Swiss-Prot (Human)
Match: RHBG (Ammonium transporter Rh type B OS=Homo sapiens GN=RHBG PE=1 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 2.621e-91
Identity = 154/403 (38.21%), Postives = 233/403 (57.82%), Query Frame = 0

Query:   32 QGILLILFVVFVDYGDD------FKPNIKNENRKDFNQKLPAFQDLHIMVFLGFGLIMTFLKRYSRGMLVHAFLIGGLVIQWATLLQGFF-SMRQSKVELTLDRMINADYAVLVVLVSLGALIGKVNSLQLLIIALIETIFFAINESLCKQLLQISDFGQSMTVHLFGAIFGIAISRMIFDKRVCTSQALSTS-NKSEMYSMIGTLFLWIYFPSLNSAFVEEDSAHRRAIANTYYALAASCITSFSLTVLQSPDHRYNILHLQNATITGGIAIGSVAALMVRPWGAIILGVLASLISILTYKYILPKLRRRFNIHDVRGVYATHGMPGIVSGLAAVVCAFLATEEHYGTSLYQLYPARVPSSNTTKYQDLIKIHPEIPASQGRSAYIQGAYQFGGLIVTVILA 426
            QG   +LF VFV Y          + N  N +  +F  + P+FQD+H MVF+GFG +M FL+RY    +   FL+    +QW+TL+QGF  S     + + ++ MINAD+    VL+S GA++GK    QLL++AL+E + F INE +   LL + D G SMT+H FGA FG+ +SR+++  ++  S+    S   S++++MIGT+FLWI++PS N+A     +   R   NTYY+LAAS + +F+L+ L   D R +++H+QNA + GG+ +G+ + +M+ P+GA+  G LA  +S L YK+  P L  +F + D  GV+  HGMPG++  L  V+ A LAT E YG  L  ++P                    + A   RSA  Q  +Q  GL VT++ A
Sbjct:   23 QGATAVLFAVFVRYNHKTDAALWHRSNHSNAD-NEFYFRYPSFQDVHAMVFVGFGFLMVFLQRYGFSSVGFTFLLAAFALQWSTLVQGFLHSFHGGHIHVGVESMINADFCAGAVLISFGAVLGKTGPTQLLLMALLEVVLFGINEFVLLHLLGVRDAGGSMTIHTFGAYFGLVLSRVLYRPQLEKSKHRQGSVYHSDLFAMIGTIFLWIFWPSFNAALTALGAGQHRTALNTYYSLAASTLGTFALSALVGEDGRLDMVHIQNAALAGGVVVGTSSEMMLTPFGALAAGFLAGTVSTLGYKFFTPILESKFKVQDTCGVHNLHGMPGVLGALLGVLVAGLATHEAYGDGLESVFP--------------------LIAEGQRSATSQAMHQLFGLFVTLMFA 404

The following BLAST results are available for this feature:

BLAST of TCONS_00008700-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008700-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RHBG	2.621e-91	38.21	Ammonium transporter Rh type B OS=Homo sapiens GN=...	[more]

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TCONS_00008700-protein (polypeptide) - C. hemisphaerica