TCONS_00008700 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008700
Unique Name	TCONS_00008700
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3668

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000087:89782..100387+
coding sequence from alignment at sc0000087:89782..100387+

transcript sequence

>TCONS_00008700 ID=TCONS_00008700|Name=TCONS_00008700|organism=Clytia hemisphaerica|type=transcript|length=3668bp
GTGGTATTCCAGAGACCGACCGACTGGTACCTCAGCTCAAGAAACCGTAA
AGaaatgaacaaaacaaaatttggtaGTTTATTGCTGTTGTTGCAAGGCA
TACTATTAATcctgtttgttgtttttgtggATTACGGCGATGACTTTAAG
CCGAACATCAAGAATGAAAACCGTAAAGATTTCAACCAAAAACTTCCAGc
ATTTCAAGATTTGCATATCATGGTTTTTCTTGGGTTTGGTTTAATCATGA
CCTTCCTGAAACGCTATAGCCGTGGAATGCTGGTTCATGCTTTCCTCATC
GGTGGGTTAGTTATCCAATGGGCCACCTTACTTCAAGGCTTCTTTTCGAT
GAGacaatcaaaagttgaattgaCTCTTGACAGGATGATCAATGCTGACT
ATGCAGTTCTAGTGGTTCTTGTATCACTTGGTGCATTGATTGGCAAAGTC
AATTCCCTGCAACTTCTCATCATTGCATTGATAGAAACCATCTTTTTCGC
TATCAACGAATCGCTTTGTAAACAATTACTTCAGATCAGTGATTTTGGCC
AATCAATGACCGTACATTTGTTTGGTGCTATCTTTGGGATTGCTATTTCA
CGAATGATTTTCGATAAACGTGTTTGCACCAGTCAAGCCCTGTCGACATC
CAATAAATCTGAAATGTATTCAATGATAGgtACATTATTTTTATGGATAT
ACTTTCCAAGTTTGAACAGCGCATTTGTAGAAGAAGATTCAGCTCACCGA
AGAGCTATTGCAAACACTTATTATGCATTAGCTGCTAGTTGCATCACAAG
TTTCTCCTTGACTGTGCTACAAAGTCCTGACCATCGATATAATATTTTAC
ATTTACAAAATGCAACGATTACTGGAGGTATTGCAATTGGCTCTGTTGCG
GCATTGATGGTACGACCTTGGGGAGCCATTATACTTGGTGTTTTAGCGTC
ACTTATTTCAATCTTGACTTACAAGTATATTTTGCCTAAATTACGACGAA
GATTCAATATCCATGACGTACGTGGTGTGTACGCAACACATGGTATGCCA
GGCATCGTTAGTGGTCTTGCAGCTGTGGTATGTGCTTTTCTGGCAACTGA
AGAACACTACGGAACAAGTTTATATCAACTATATCCTGCACGAGTTCCAA
GTAGTAACACAACCAAATATCAAGACTTGATCAAAATACATCCAGAGATA
CCAGCAAGTCAAGGACGATCAGCATATATTCAAGGAGCTTATCAATTTGG
TGGTTTAATCGTTACCGTTATTCTTGCACTGATAGGAGGTCTAATATCAG
GTGCATCAATTCGAGTGAAGTTTTTCGAACCATTGACCGCTCATGATGCA
TTCGATGACCATGCTGACTTTCAGGAGTCGACATGTATTGATGTTTATAC
CGATGACGATTTCGAGGACGACGGGGAGCGACATCACGACAGTATCCGTG
GCAACAAACGACTTTACGATCTCAACCAACGACATCctagtgatgacgtc
atctccGGTGACGGAATTCCTCAAATGACGTCATATATTTCAGGAAGACA
AACACCGTCTAGTGTACGGCACAGCTATCATAGTATAAGCGCCAAAAGTA
GTGATGGTGTGATAAAAGGAAGCCAGGAGCTACCTGTCGATGATAATGAA
AATGTGAAAGGAAGTAAAGTGAATTTAGGCAGCAATGGTGATATGAGACC
AGTTCAAAATGGTGGAATTGAAATGACGCCTTTGATTGTTGTTGCTGACA
ACTCTGATGGTGATGATGATGGTACAGCAGCGACCTCTTGATGATGGAAT
CTGTTCATTTTCAACTAAACGAGATAAAGAATTTGAGATGATTGAAAGCA
ACATATTTTTATATGATTGAGATCTAAATGGAAGAATGactcaaagaatg
aaaaatggTCCACAGTAGTTCAATTAAAAACCGATTGTAAAAATCTACAA
ATACAACAGATTCCATTGTTATTCTCATAATTGAATTGACTTGGATTGTC
GAAAGATcgactctttaaaaaaaactcctAGAGttaaaatactgaaaaag
taTTATTTCAGCATTTCTAGGCCAGTAGTTGCAGGTGAAAACGtaaatag
attttaaaaaatcatatcATTATATTTACcacaaaataaattctaaaaaa
agtaacaaatacAGAATaagtaatttttctatttttctatttaaCACTTA
TTTCTGAAATAATTTTATTGGGATCACTAGCGTGGTGACAGGTTGGGGGG
AGAAAATAAGGGGCGTAAAAAGGCTCTTCAAAACACTGATTTCAGCGCCC
CTTTCCCTTTTTTACCTCACAAATGGCAGTTTCTAACCCTAGAAAATGGT
GAAATGTCGAAatattttcgcgctcgcttcgagCACGTCATTTTTCTCCC
CGGTGTTTGCCAAGCTACCACGCTACTGATTGGGATTCTAAAGAATCACT
TCGTTAATCCTTTAGTGGTCATCCGGTATCTACCAAAAGATACTGAGCGA
GGAACCATTTTTGTGTTCATAGTGAAACTAGTAGTTCCTGCCTCTTTCAA
TTCTTGCTTACAAGGCACTGAATCAACGTCTTTATCCATTGGTAGATTAC
TTGATGGTTCTTTACTTGAGGTGTCGTCAATTCTATGTGCTGTCTTTAAT
TCTTTTGGCTTTTCATTTGACAAGGTAGTGACTTTATCCTCGACAGCAGG
AAAATCTatggttattttttcatctttaggGAGTTTTTTATGTCCTTtcc
ctttctgttttctgtttttatttttaggtttcggttttttattttgtgtg
tTACTTCCCTCACCAGTGGAATCCGAATGTCGATTTCCAATGTCGATTTC
TCCAGATTCAACACACATACCAATTGCATGATCGACCATTTGGATATCAG
TTGCTTTCCCAGAAGAATCTTGCTGTTGGGTTTTAGGTTTTGTCTTCGTT
TTTTTAGATTCATATTCCATTTCCATTGTTACATCAGATTCAGCCTCAAT
TAGAACATTCCCGTTGGAAGAATTTGTATTGTTCGATTTCTTATTCTTCT
GATATTTCTGGTGTGGTCTTCTAGCCATATTGAAACGAAAGTCAGGTGGA
TATTTATGCTTTTCAACTAAATGTCGTCTCCTCGTTTCAACAGCTTTAAA
AGATCTTCCACAAGATTCGATCAGACAATGAAAAACAGCAATGCCTTTAT
CTCTTTGTGCTTTAAAGAAAGCATCGTGACTTTCACTTATATGCAGTGAT
AGCAAATGATTGGATGAGAAATTACGGTGACAAGTTTCACAGCTGTATCG
ATGAAGCATATCATAATGTCGATTATATTGCATTGGATCTGTAAAAGTCT
CCCGACAACCCTTAACAGAACATCCAAACTCTTCAATATGAACAGCTGAG
ATGGAATCTACCAAGAAATCAATATCAGAGTTCACAGTCTTTTCATGGAA
ACTAAATATTTGGTTTCCATCGTCGAAGAAAGGATCCGTAGGTAATTTAT
GTCGACGCAATGGGAAACCTGTTAATAATTCTTTTGATATTTCCATCTGT
AAACGAGAAGAAAGGAAAAGTATGTTAAGTCAAAATCTGTAAACAAAAAC
AACGCAAATTGATGGAAATACTTATATTAGTTCTCATTATAACAAGCTGA
CATTTTCGTGGATAGACT

Run BLAST on NCBI

protein sequence of TCONS_00008700-protein

>TCONS_00008700-protein ID=TCONS_00008700-protein|Name=TCONS_00008700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=596bp
VVFQRPTDWYLSSRNRKEMNKTKFGSLLLLLQGILLILFVVFVDYGDDFK
PNIKNENRKDFNQKLPAFQDLHIMVFLGFGLIMTFLKRYSRGMLVHAFLI
GGLVIQWATLLQGFFSMRQSKVELTLDRMINADYAVLVVLVSLGALIGKV
NSLQLLIIALIETIFFAINESLCKQLLQISDFGQSMTVHLFGAIFGIAIS
RMIFDKRVCTSQALSTSNKSEMYSMIGTLFLWIYFPSLNSAFVEEDSAHR
RAIANTYYALAASCITSFSLTVLQSPDHRYNILHLQNATITGGIAIGSVA
ALMVRPWGAIILGVLASLISILTYKYILPKLRRRFNIHDVRGVYATHGMP
GIVSGLAAVVCAFLATEEHYGTSLYQLYPARVPSSNTTKYQDLIKIHPEI
PASQGRSAYIQGAYQFGGLIVTVILALIGGLISGASIRVKFFEPLTAHDA
FDDHADFQESTCIDVYTDDDFEDDGERHHDSIRGNKRLYDLNQRHPSDDV
ISGDGIPQMTSYISGRQTPSSVRHSYHSISAKSSDGVIKGSQELPVDDNE
NVKGSKVNLGSNGDMRPVQNGGIEMTPLIVVADNSDGDDDGTAATS

Run BLAST on NCBI

transcript from alignment at sc0000087:89782..100387+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008700 ID=TCONS_00008700|Name=TCONS_00008700|organism=Clytia hemisphaerica|type=transcript|length=10606bp|location=Sequence derived from alignment at sc0000087:89782..100387+ (Clytia hemisphaerica)
GTGGTATTCCAGAGACCGACCGACTGGTACCTCAGCTCAAGAAACCGGTG
AGtttattgtttctttttttttcaaacctgCGCCTTTATCGATGGCTTGA
GTTTAGACGTTGTACATAGCATGCTGCTCTGGTCATtatttacacccctt
tctcactttctcacagacccggtaatactttagccagtggggataaaaat
aacggactgaaattcGATAGggttgatatttccatattttttatggatag
agatttcaattctttttgttttcaagtcagaaaactcgatggggatggga
aaaatagcatgatATTTTGAGGTgaggattgatttatttgattattttca
gcggggacaaaaattggaggataattttccaccgggtacaatatttttgc
caattttaccaGTGGGAAGGGGCTCCAGTTggttctgacttgaaaacaaa
tgaataaaaatccCCAGGTATAAAATATATTGGAATACAAATCCCCATCG
ATTTtcattccattatttttacccccgctggctgagaaaatcctaccggg
tctgtgagaagggggtgttaagTATTGTAAATAACGGAGACAGCAAATGG
AGACAGCCAAACCGGCTTACGGCACTTTATAGTTTAAAGTGGCGGAAAAT
CTAATACCCGAACAATGCAATATAAACTGGTAATCGATGTAATTATCTAT
AATCATGAAATACTTTTATAATAGCTTTCATTCAGCTTTCGTACAAAAAC
ATTACAAAAAATCGATCTAAAGTAATAAAGAACATCCTTACACACAGCAA
GCGAGATCAATGTTTTATGCCAAGCGATTATAATCTTGAAATGTCATATC
AACAGCAAGATAATGGATCTACTTCAATGAAACTTCTCgtctatttttta
atttaaagctTTCAGGCATTTTGTTATTAAATTGTATGATATGTTTTTAA
tgctgttttgattttgatgagCGTGACATCACGTTTGGAATTTGAAGAGG
AAGGGACAACATAAGAACACTTTTAACTTTTAATTGCCTGAACGAACAAC
GAACGTAAGCAAATCTTGAAATATCTTCGGAGCTACACAAGCACGGGAAG
TTCTATTGCCTAAACAAACGCACGTAACTCCTGAAATTTCCTCCGAGCTA
CACCAATTCATAGATTCAAATGTgaacataaattttttttgacaaccTCG
TACGCAGAATCAAGATTTTTCGTACTATACAGTAAAGaaatgaacaaaac
aaaatttggtaGTTTATTGCTGTTGTTGCAAGGCATACTATTAATcctgt
ttgttgtttttgtggATTACGGCGATGACTTTAAGCCGAACATCAAGAAT
GAAAACCGTAAAGATTTCAACCAAAAACTTCCAGGTAAGACATTACTTAA
AATCacattagtctgaatcgcaaacCTTTacagatatacttcctatataa
aaAACTTTTAGTCTGCTCGGGTAAGttagatcgcattagccgaCGGAAAA
TGAGCAAAAGCCTAAAATCACGTCTACTTCTTGCTGAACTTTATTGTTTG
ATAGTTTTTTTAGCCTAGTGAAGTTGCTCATAGGTCCTTAACTTTTTTAG
AATGAGCGCTAAAATCTAGAGTAAAACAAAGACTAGATGGAGTATCACcc
tattttgaataaaaatcgCTGGAATCTTACCAGAATCGAAATGGCCATTT
AATATCCATATAGGCATATAGGAAGGGGGGGgtacgaaccttttcaagtc
cgAAAACTTCCGTGGAAATATGTGGATAATCcctgaaaaataggaaaatc
taCCTCTTAAAGTGAagatggacgaactaaaatgagctttttaaccctta
gaaattttagaataacttatATAAATATAGTATAGTAATAGAATAAAATA
TCACTCCAAATTGGCTTGAAGGTCTTTATTTTGCAGAGAAGTAGAATAAC
AGACTTGATGAAAACATTGGCAATAGCCTCTCTATAGCATCTGTCGAACT
AGCATGTATGAAAAAAGTCATTGCTTGAAAACATGAAAGCGCGGAGAAAG
ATCGCCGTGTGTTTCATGAAACTTAAAGAATAACCACAAAGGATTTCATA
AACAATCTATGTGTCTAAGTTGATATTAGCAGTGCTAGTGCTAATGACTA
TTAGTTATCCATCATagtaaaatcaactcaaaaaaGAATTGGTAAATCCT
AGTCTTTTGAAAGTAGTTTTCCCAACCATTTTTGGCTTTTCGCCTAAACA
CCTTTTACTGTACCATAGATATCTGCACTGAAGTGTACTGCCTAATTCTC
TTAAAGGTAACAAATCGAGTTCAGATGATTAAACCTCAACCTCTCGCTTG
GCAAGGCGCTTACTCTCTTTACCGTATAATTATATGGtagttttgctatt
ttttcagcATTTCAAGATTTGCATATCATGGTTTTTCTTGGGTTTGGTTT
AATCATGACCTTCCTGAAACGCTATAGCCGTGGAATGCTGGTTCATGCTT
TCCTCATCGGTGGGTTAGTTATCCAATGGGCCACCTTACTTCAAGGCTTC
TTTTCGATGAGacaatcaaaagttgaattgaCTCTTGACAGGTAATACAA
CGTAACAGATTTAATCTAGCACTTTCTCTGTTTTTGAGCggcacattttc
aaaatatggcgACAGACTTTACTCTCAATCCGATATTTTTTCACAACTAC
AGTACGCGATTCACTTTTTTGGAGATTCCCACTAGTCAAAGAGTAAACAA
CAGTGGGGAAATCCAACTTGACATGTCTCTTTACGTCATAATCAACACAC
TGTAGCCCTTCCAGATTTTCTGAAAGTCAAAACCACTGACGTTGCAAACC
CAACTGTTTTTGGGTAAATCGAAACAGTTAAGGATGAGATCTTTGGCGTG
CTCGTGTCTTAGACTATAGTACACTTTTTAGAAATAGTCTTATCATGACA
AAACTAAAAGATATCCCAAGTTCACCCCCATAGTTTTCCTTGTGAAGTCT
GAAAAACCTTAATGACCCTCCACCGGGCAGTAACTGTACCAAATCTCAGT
ATAACTTTATAAGCATTTTGACCCTTGTTCTTAAAagaatttgatttctt
tctctCTCGAGTACTCCAGTATTCACCGAATATTTTAGCGAGCCTGTATC
CTTGATATAAAGGagtctttatttttttgatacGGAGATagtagtgaggt
taagtatactgggataatcacgacgacggacgaaaaaggTAATGggctag
tggaaatacgaaatttgattggttgaaactcactagcctgttaaattttc
gttcgtcgtcgtgattttaccgatttacttaacctcactagtGTTTGAAG
TGAATCCGTATTTTTCTAGAGAAgcattttcaatcaaaagtgtACCTCTT
TCTCCACAGGATGATCAATGCTGACTATGCAGTTCTAGTGGTTCTTGTAT
CACTTGGTGCATTGATTGGCAAAGTCAATTCCCTGCAACTTCTCATCATT
GCATTGATAGAAACCATCTTTTTCGCTATCAACGAATCGCTTTGTAAACA
ATTACTTCAGATCAGTGATTTTGGCCAATCAATGACCGTACATTTGTTTG
GTGCTATCTTTGGGATTGCTATTTCACGAATGATTTTCGATAAACGTGTT
TGCACCAGTCAAGCCCTGTCGACATCCAATAAATCTGAAATGTATTCAAT
GATAGGTAATTTTATTAAACGATTATGCTCTTTGTAGCGATAAGAGAAAG
GAAGGAACTTGGTAACttttatctagatttttcatTGTATCTCTACATGG
GAGAAAGCATAGTGATATTCATTCTAATGTCGAATTTTGTTTCGATTTGC
CTTTTCAAATTGAAACAACGAATAAGGAAAAAGAGAAAGGTCATTAATGC
ACAGACCTAATGGCACccattggaaaatttggccaaaatttagtcCCCGG
TAAAGAAAATACCctaaatttcagtcccactagaAAATTGAATTCGTTTC
AATACCTATTTAAAATTCAATTGAAAAATTGCATTGCAGAACCATCTCAC
TACTTTTTTTGACCTGAGAACAATAAAGTTTCTATCCCAATTGgtatttt
gatagaaattattaTCTCCACTGTGTGATGAAGATCCACCGAGGCAGTGA
GACAGGAGTGTATGAATCTGTAAGGAGCACTGACAGTGTACGGCATAAAA
GAGTTGCATCTTATCGTCTGATAGGAACTTTGATGGGTTTTGTTTTGCTC
CCAAGAAGTGAAAATCTATCTTTACTAGGCTCATGAAGTATTAAAGATCA
ATCACcctattaaaatattttcaacagtAAATTTACTTCAAACAGTGGCC
AAAGCGAGGTTTTTCGTCTGAgatggaaaatggattttacaaaGCAACAA
AATAGCATAAATTCTTGAGATTTTGGCgaattaggcgagaccaatctaat
ttgttgttctacgggcagatcgttagcaaaatatgggtcggtcggtcggt
aaggGTTGttaaagtaccgaaaatgttttccaaaaaatatctggttcaaa
aattcactttttttgtcttCGATAAAGATCATgataaaatcttagtgtat
ggaatgcatgattttctaaatttttcaatttcttgaattaattttcagct
ttattcaaatttgattcttacaaataactagtgtgtaaaatatattgtag
cgaaaattctatattattatttttatgattttagcaaaaatagggaaaaa
ttcTTAAGACAGAAAAGCCTCATCAAATACTTCGCTGAGACGTAAGAAAA
TTTAACACAgttcaaataatttttatttcaggtACATTATTTTTATGGAT
ATACTTTCCAAGTTTGAACAGCGCATTTGTAGAAGAAGATTCAGCTCACC
GAAGAGCTATTGCAAACACTTATTATGCATTAGCTGCTAGTTGCATCACA
AGTTTCTCCTTGACTGTGCTACAAAGTCCTGACCATCGATATAATATTGT
AAGTCATGTGGCTGAAAATGAGACAGCGAAAACTCCTAAAAAGACTATTC
CAGAAAAATTCGGCTCTCTATTATTGAGGATAACAGTTTTGGAAGGTCAA
CCCAGCGCTGAAcctttttgtcaaagttttagATACCTAGTCTTATCAAC
TCATGGATTTACGAccgttttttttagaaataatcgTCTTTACACCGAAA
TCTCAAAGACTGCCCACCTAGACTCTTTTCCtatttgtaacaaaatttac
CAATCTCAATTCTAGTTACATTTACAAAATGCAACGATTACTGGAGGTAT
TGCAATTGGCTCTGTTGCGGCATTGATGGTACGACCTTGGGGAGCCATTA
TACTTGGTGTTTTAGCGTCACTTATTTCAATCTTGACTTACAAGTATATT
TTGGTGAGTTTGATTCTCGTTTAATTTCCGTCTGTCCAATGAGGCTTCTA
TATTTCCTATTACCCCTCAATTTCAAACTCGAACCTCGAACCCAGTCCTT
TAGTTCGCTTTTTTATGCGATTCTGTTCATGAAATTGTATCATGTCCATc
tataaaatcaaaatgtgGTACAAGTGGCTCTGGAAACGAGATTGGCTCAA
TCTGAGAAATCTGAGCCTACACGATCCCAACAATAAATCACCCTTGGCTT
ACACATAACGTTGTCTTTCttacaaaactttcaaattggTACTTCACCAA
TGCTCAAAGCTTATTGCCACGAAAATCTTCAGTAGTCAAGTGTTTTAATA
GTTTCTCAGCCTATAATCATTACTTTGACACATTGTTAAAGTTAAAAAGA
ACTGACTTAACTGACTTTTCTTTTGGTTTCAACATATTGTAGCCTAAATT
ACGACGAAGATTCAATATCCATGACGTACGTGGTGTGTACGCAACACATG
GTATGCCAGGCATCGTTAGTGGTCTTGCAGCTGTGGTATGTGCTTTTCTG
GCAACTGAAGAACACTACGGAACAAGGTAAGCTATTCTAAATCTTCCCAA
TATACAACAGAGCTACCGTCTAGTTGAATGTTGACTAAAAGCAACGGAAT
GCATACTGAAAGGTTGCCCCGTCAATTATCACAGTCTAAAGGGATTGAAG
TCGAGCCTCCAAGGGTCAGATGTCATTAAAACATTCATTCAAACCAAGCC
CCCTTGCAACTTTTACATAAAGTTTTATCAggtatattttataaaatatc
cTCGATATCTGGGTCCTGATTTCCAAACATTTTGTAGTATACTAATAAAC
TCAAACTACTTTGATACCCCCTGAGATCGACTTTTGAAACATTTCAGGAA
ACGAGGGAAAAACTCggctgaaaaaaataacaattccTTATTATGTTTGA
AAAGGTTTTCTATAATATTTCTAGGCtagacttttcttttttttggcaAT
TCAAGCCTCGAATAGTTCTCATCTTTTGACGTTTTtaagcctcattgttc
ttataaaaaccgaGATTTTCAAATTCTCATAGCTATCAATTTGTGAATTT
CAGTTTATATCAACTATATCCTGCACGAGTTCCAAGTAGTAACACAACCA
AATATCAAGACTTGATCAAAATACATCCAGAGATACCAGCAAGTCAAGGA
CGATCAGCATATATTCAAGGAGCTTATCAATTTGGTGGTTTAATCGTTAC
CGTTATTCTTGCACTGATAGGAGGTCTAATATCAGGTCAGTGTTTGAAAA
CTTTCTGCTTGgctccactgacctttatatatcactggaccaagctatat
ccgtcatctttgatcgaagttttttaaAAGTTGGTACCAGCAAAGAAGCC
ATcgtagtgtttgaaactttgcctaacgacaaacggcgctacatcattag
tgtacaagtgaaactagatctagcgctctctccgcgAGTCAGTGCTTGAC
TCTTTCAAAATAATTGAGGTCGAGATTTCAGGCTTCCTTACTTAGAATCG
ATATATTGAAGATATTTTgagatttcaaattgaaaaagtGAAATCTTAGG
CATAAAATACATAAATATGCCACAACTTCGACTATAACCTTGCCTGTAGT
CCATTCGCTAtctattttgctatgatgtggAACTATTGTAAACAGAATTT
CTCTACTCTTATCGTCTTACGTTGCTATGTAgcggcgtggtggcaggggg
agGGGCAAATACCCATAGTGGCTGATTTTTGGGGACGCTGAAAGTCAAAG
GGCGTACAAAGGCGCCTCTGTTACTAATTTCGGAGCCCCTTTTTACGTCT
TAGAATTATCAGTTTTGAgccaaaaggagaaaaaaatactCAACAATTTT
CGTCCTCGCTTCgctttttttcattgtttataGGGAAGAGGGGTGATAAA
ATCAAAACTATCGCAAAATTGTCTGCCCAAAATTTGGTCCACCCACCACC
CTACTGTATGGTTTCCACATGCTATCAAATTAAGAGAATGCACACAAAGC
AAATTATCCTTAGAAGAGAAATGGGTCCTAGCGATTACCATCTTTCGCGA
TCTTTTAGTGAGGAGAGGGGAATATGTGAGAAGAGAAACAAGCACTAACC
TTTCGATTCATCTTATTTTTTATTGACATTTAGGTGCATCAATTCGAGTG
AAGTTTTTCGAACCATTGACCGCTCATGATGCATTCGATGACCATGCTGA
CTTTCAGGTAATCCATTCATTCTAATACTGATATATTGGCATTTCGCTGC
AATGGAAAATATTAATTATTAGAAGAACGTTCTAACAATGTTCAAAATgg
acgaaaatgaaaaaagtggaaatGCTGAAATTGCCATTACTTCGCGAACT
TTCGGGAAATTCTGAAAAACCTACTCCcgaaattccaaaaattctCAATA
TGTATTCATTCACGCAAAGTTTTCGAATTAACGCATTTACGCAGCTTTCT
AAGAATTTTCATGCATTCGCCCAAGTGAAAAGGCTCATTCACGCACACCG
CTGGGAGCTGGGAGGACCCCATATGATTGTGGTCTACACAAAAGACAGCA
CTACGCTTTTAAGCCTTAttcgaagagtaggagttttacgtcCGGAgcaa
aggaagatatgacgtagcctagttaAATCGGAAACAAAACACTTAGTTAA
ACTGCCTGTTGTGTAGTGGGGAACAGACAAAAATACTCCATCATATCTCA
TTGAAGATCATTGAAATTAGGCGAAAACGAGAAGAGTTTCCCATTGTTAT
GTAAAAAATAAGCTGAAATCActtcttttagaaaaacaaattagaaCTCT
TTAAAGTCGAGTGGTAAATGTGTGACAATATAACACATACAATCTTACTT
TTCTTTTCACAGGAGTCGACATGTATTGATGTTTATACCGATGACGATTT
CGAGGACGACGGGGAGCGACATCACGACAGTATCCGTGGCAACAAACGAC
TTTACGATCTCAACCAACGACATCctagtgatgacgtcatctccGGTGAC
GGAATTCCTCAAATGACGTCATATATTTCAGGAAGACAAACACCGTCTAG
TGTACGGCACAGCTATCATAGTATAAGCGCCAAAAGTAGTGATGGTGTGA
TAAAAGGAAGCCAGGAGCTACCTGTCGATGATAATGAAAATGTGAAAGGA
AGTAAAGTGAATTTAGGCAGCAATGGTGATATGAGACCAGTTCAAAATGG
TGGAATTGAAATGACGCCTTTGATTGTTGTTGCTGACAACTCTGATGGTG
ATGATGATGGTACAGCAGCGACCTCTTGATGATGGAATCTGTTCATTTTC
AACTAAACGAGATAAAGAATTTGAGATGATTGAAAGCAACATATTTTTAT
ATGATTGAGATCTAAATGGAAGAATGactcaaagaatgaaaaatggTCCA
CAGTAGTTCAATTAAAAACCGATTGTAAAAATCTACAAATACAACAGATT
CCATTGTTATTCTCATAATTGAATTGACTTGGATTGTCGAAAGATcgact
ctttaaaaaaaactcctAGAGttaaaatactgaaaaagtaTTATTTCAGC
ATTTCTAGGCCAGTAGTTGCAGGTGAAAACGtaaatagattttaaaaaat
catatcATTATATTTACcacaaaataaattctaaaaaaagtaacaaatac
AGAATaagtaatttttctatttttctatttaaCACTTATTTCTGAAATAA
TTTTATTGGGATCACTAGCGTGGTGACAGGTTGGGGGGAGAAAATAAGGG
GCGTAAAAAGGCTCTTCAAAACACTGATTTCAGCGCCCCTTTCCCTTTTT
TACCTCACAAATGGCAGTTTCTAACCCTAGAAAATGGTGAAATGTCGAAa
tattttcgcgctcgcttcgagCACGTCATTTTTCTCCCCGGTGTTTGCCA
AGCTACCACGCTACTGATTGGGATTCTAAAGAATCACTTCGTTAATCCTT
TAGTGGTCATCCGGTATCTACCAAAAGATACTGAGCGAGGAACCATTTTT
GTGTTCATAGTGAAACTAGTAGTTCCTGCCTCTTTCAATTCTTGCTTACA
AGGCACTGAATCAACGTCTTTATCCATTGGTAGATTACTTGATGGTTCTT
TACTTGAGGTGTCGTCAATTCTATGTGCTGTCTTTAATTCTTTTGGCTTT
TCATTTGACAAGGTAGTGACTTTATCCTCGACAGCAGGAAAATCTatggt
tattttttcatctttaggGAGTTTTTTATGTCCTTtccctttctgttttc
tgtttttatttttaggtttcggttttttattttgtgtgtTACTTCCCTCA
CCAGTGGAATCCGAATGTCGATTTCCAATGTCGATTTCTCCAGATTCAAC
ACACATACCAATTGCATGATCGACCATTTGGATATCAGTTGCTTTCCCAG
AAGAATCTTGCTGTTGGGTTTTAGGTTTTGTCTTCGTTTTTTTAGATTCA
TATTCCATTTCCATTGTTACATCAGATTCAGCCTCAATTAGAACATTCCC
GTTGGAAGAATTTGTATTGTTCGATTTCTTATTCTTCTGATATTTCTGGT
GTGGTCTTCTAGCCATATTGAAACGAAAGTCAGGTGGATATTTATGCTTT
TCAACTAAATGTCGTCTCCTCGTTTCAACAGCTTTAAAAGATCTTCCACA
AGATTCGATCAGACAATGAAAAACAGCAATGCCTTTATCTCTTTGTGCTT
TAAAGAAAGCATCGTGACTTTCACTTATATGCAGTGATAGCAAATGATTG
GATGAGAAATTACGGTGACAAGTTTCACAGCTGTATCGATGAAGCATATC
ATAATGTCGATTATATTGCATTGGATCTGTAAAAGTCTCCCGACAACCCT
TAACAGAACATCCAAACTCTTCAATATGAACAGCTGAGATGGAATCTACC
AAGAAATCAATATCAGAGTTCACAGTCTTTTCATGGAAACTAAATATTTG
GTTTCCATCGTCGAAGAAAGGATCCGTAGGTAATTTATGTCGACGCAATG
GGAAACCTGTTAATAATTCTTTTGATATTTCCATCTGTAAACGAGAAGAA
AGGAAAAGTATGTTAAGTCAAAATCTGTAAACAAAAACAACGCAAATTGA
TGGAAATACTTATATTAGTTCTCATTATAACAAGCTGACATTTTCGTGGA
TAGACT

Coding sequence (CDS) from alignment at sc0000087:89782..100387+

>TCONS_00008700 ID=TCONS_00008700|Name=TCONS_00008700|organism=Clytia hemisphaerica|type=CDS|length=1791bp|location=Sequence derived from alignment at sc0000087:89782..100387+ (Clytia hemisphaerica)
GTGGTATTCCAGAGACCGACCGACTGGTACCTCAGCTCAAGAAACCGTAA
AGaaatgaacaaaacaaaatttggtaGTTTATTGCTGTTGTTGCAAGGCA
TACTATTAATcctgtttgttgtttttgtggATTACGGCGATGACTTTAAG
CCGAACATCAAGAATGAAAACCGTAAAGATTTCAACCAAAAACTTCCAGc
ATTTCAAGATTTGCATATCATGGTTTTTCTTGGGTTTGGTTTAATCATGA
CCTTCCTGAAACGCTATAGCCGTGGAATGCTGGTTCATGCTTTCCTCATC
GGTGGGTTAGTTATCCAATGGGCCACCTTACTTCAAGGCTTCTTTTCGAT
GAGacaatcaaaagttgaattgaCTCTTGACAGGATGATCAATGCTGACT
ATGCAGTTCTAGTGGTTCTTGTATCACTTGGTGCATTGATTGGCAAAGTC
AATTCCCTGCAACTTCTCATCATTGCATTGATAGAAACCATCTTTTTCGC
TATCAACGAATCGCTTTGTAAACAATTACTTCAGATCAGTGATTTTGGCC
AATCAATGACCGTACATTTGTTTGGTGCTATCTTTGGGATTGCTATTTCA
CGAATGATTTTCGATAAACGTGTTTGCACCAGTCAAGCCCTGTCGACATC
CAATAAATCTGAAATGTATTCAATGATAGgtACATTATTTTTATGGATAT
ACTTTCCAAGTTTGAACAGCGCATTTGTAGAAGAAGATTCAGCTCACCGA
AGAGCTATTGCAAACACTTATTATGCATTAGCTGCTAGTTGCATCACAAG
TTTCTCCTTGACTGTGCTACAAAGTCCTGACCATCGATATAATATTTTAC
ATTTACAAAATGCAACGATTACTGGAGGTATTGCAATTGGCTCTGTTGCG
GCATTGATGGTACGACCTTGGGGAGCCATTATACTTGGTGTTTTAGCGTC
ACTTATTTCAATCTTGACTTACAAGTATATTTTGCCTAAATTACGACGAA
GATTCAATATCCATGACGTACGTGGTGTGTACGCAACACATGGTATGCCA
GGCATCGTTAGTGGTCTTGCAGCTGTGGTATGTGCTTTTCTGGCAACTGA
AGAACACTACGGAACAAGTTTATATCAACTATATCCTGCACGAGTTCCAA
GTAGTAACACAACCAAATATCAAGACTTGATCAAAATACATCCAGAGATA
CCAGCAAGTCAAGGACGATCAGCATATATTCAAGGAGCTTATCAATTTGG
TGGTTTAATCGTTACCGTTATTCTTGCACTGATAGGAGGTCTAATATCAG
GTGCATCAATTCGAGTGAAGTTTTTCGAACCATTGACCGCTCATGATGCA
TTCGATGACCATGCTGACTTTCAGGAGTCGACATGTATTGATGTTTATAC
CGATGACGATTTCGAGGACGACGGGGAGCGACATCACGACAGTATCCGTG
GCAACAAACGACTTTACGATCTCAACCAACGACATCctagtgatgacgtc
atctccGGTGACGGAATTCCTCAAATGACGTCATATATTTCAGGAAGACA
AACACCGTCTAGTGTACGGCACAGCTATCATAGTATAAGCGCCAAAAGTA
GTGATGGTGTGATAAAAGGAAGCCAGGAGCTACCTGTCGATGATAATGAA
AATGTGAAAGGAAGTAAAGTGAATTTAGGCAGCAATGGTGATATGAGACC
AGTTCAAAATGGTGGAATTGAAATGACGCCTTTGATTGTTGTTGCTGACA
ACTCTGATGGTGATGATGATGGTACAGCAGCGACCTCTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004888	XLOC_004888	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00008700-protein	TCONS_00008700-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000087	supercontig	sc0000087:89782..100387 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.725591	0.523433	0.568307	0.289266	4.07279e-06	6.60219e-07	0	0	0.0419324	0.0281654	0.00623871	0	4.71393e-06	0.709911	0.483851	0.256136	2.27576	3.94431	1.51914	1.42773	1.79405	0.655544	1.12767	5.10529	2.97329	1.91613	0.999508	2.1221	0.797308	1.04821

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002229	RhesusRHD
IPR024041	NH4_transpt_AmtB-like_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008519	ammonium transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015696	ammonium transport

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015696	ammonium transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0008519	ammonium transmembrane transporter activity

Blast

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BLAST of TCONS_00008700 vs. Swiss-Prot (Human)
Match: RHBG (Ammonium transporter Rh type B OS=Homo sapiens GN=RHBG PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 6.954e-80
Identity = 151/396 (38.13%), Postives = 229/396 (57.83%), Query Frame = 1

Query:  115 FVVFVDYGDD------FKPNIKNENRKDFNQKLPAFQDLHIMVFLGFGLIMTFLKRYSRGMLVHAFLIGGLVIQWATLLQGFF-SMRQSKVELTLDRMINADYXXXXXXXXXXXXIGKVNSLQLLIIALIETIFFAINESLCKQLLQISDFGQSMTVHLFGAIFGIAISRMIFDKRVCTSQALSTS-NKSEMYSMIGTLFLWIYFPSLNSAFVEEDSAHRRAIANTYYALAASCITSFSLTVLQSPDHRYNILHLQNATITGGIAIGSVAALMVRPWGAIILGVLASLISILTYKYILPKLRRRFNIHDVRGVYATHGMPGIVSGLAAVVCAFLATEEHYGTSLYQLYPARVPSSNTTKYQDLIKIHPEIPASQGRSAYIQGAYQFGGLIVTVILA 1278
            F VFV Y          + N  N +  +F  + P+FQD+H MVF+GFG +M FL+RY    +   FL+    +QW+TL+QGF  S     + + ++ MINAD+    VL+S GA++GK    QLL++AL+E + F INE +   LL + D G SMT+H FGA FG+ +SR+++  ++  S+    S   S++++MIGT+FLWI++PS N+A     +   R   NTYY+LAAS + +F+L+ L   D R +++H+QNA + GG+ +G+ + +M+ P+GA+  G LA  +S L YK+  P L  +F + D  GV+  HGMPG++  L  V+ A LAT E YG  L  ++P                    + A   RSA  Q  +Q  GL VT++ A
Sbjct:   30 FAVFVRYNHKTDAALWHRSNHSNAD-NEFYFRYPSFQDVHAMVFVGFGFLMVFLQRYGFSSVGFTFLLAAFALQWSTLVQGFLHSFHGGHIHVGVESMINADFCAGAVLISFGAVLGKTGPTQLLLMALLEVVLFGINEFVLLHLLGVRDAGGSMTIHTFGAYFGLVLSRVLYRPQLEKSKHRQGSVYHSDLFAMIGTIFLWIFWPSFNAALTALGAGQHRTALNTYYSLAASTLGTFALSALVGEDGRLDMVHIQNAALAGGVVVGTSSEMMLTPFGALAAGFLAGTVSTLGYKFFTPILESKFKVQDTCGVHNLHGMPGVLGALLGVLVAGLATHEAYGDGLESVFP--------------------LIAEGQRSATSQAMHQLFGLFVTLMFA 404

The following BLAST results are available for this feature:

BLAST of TCONS_00008700 vs. Swiss-Prot (Human)

BLAST of TCONS_00008700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RHBG	6.954e-80	38.13	Ammonium transporter Rh type B OS=Homo sapiens GN=...	[more]

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TCONS_00008700 (transcript) - C. hemisphaerica