TCONS_00008772-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008772-protein
Unique NameTCONS_00008772-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008772-protein ID=TCONS_00008772-protein|Name=TCONS_00008772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MAVVQERNQDATVYCGNVDEKVGEALLWELFLQAGPVVNVHMPKDRITQN
HQSYGFIEFMSEEDADYAIKIMNMIKVYGKPIRVNKASAHNKNLDVGANI
FIGNLDPDIDEKLLYDTFSAFGVILQTPKIMRDPETGTSKGFAFVNFASF
DASDAAIDAMNGQYLSNRPITVSYSFKKDAKGERHGSAAERLLAANNPLT
QTDRPHQLFADAPPTQPEPAPEPQQPPMGGPPMPPPMPPMGMQPPMGGPP
MGGPPMPPGGGWGGPPPNMPGMGPPMGPPMGFPPNMPPPGFPPPPPGGQD
QGMRGPPPMMGGPPPPMDGSRGPPRPPPQFGGMQNRPPWGQRGMGGPPPM
GPPPGMRGPPPNNMGFNMPPRPPMPPPRGPPPRPPPQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004916XLOC_004916Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008772TCONS_00008772Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034159SF3B4_RRM2
IPR034158SF3B4_RRM1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 99..173
e-value: 6.5E-25
score: 98.8
coord: 12..85
e-value: 6.8E-21
score: 85.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 13..83
e-value: 6.2E-15
score: 54.7
coord: 100..170
e-value: 8.8E-21
score: 73.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 98..177
score: 17.626
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 11..89
score: 15.596
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 10..181
NoneNo IPR availableGENE3D3.30.70.330coord: 3..91
e-value: 7.7E-22
score: 77.1
NoneNo IPR availableGENE3D3.30.70.330coord: 92..193
e-value: 4.0E-23
score: 81.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..387
IPR034159SF3B4, RNA recognition motif 2CDDcd12335RRM2_SF3B4coord: 97..179
e-value: 7.50056E-56
score: 179.028
IPR034158SF3B4, RNA recognition motif 1CDDcd12334RRM1_SF3B4coord: 13..86
e-value: 2.32737E-51
score: 167.0

Blast
[Close]
BLAST of TCONS_00008772-protein vs. Swiss-Prot (Human)
Match: SF3B4 (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.401e-133
Identity = 179/206 (86.89%), Postives = 193/206 (93.69%), Query Frame = 0 
Query:    4 VQERNQDATVYCGNVDEKVGEALLWELFLQAGPVVNVHMPKDRITQNHQSYGFIEFMSEEDADYAIKIMNMIKVYGKPIRVNKASAHNKNLDVGANIFIGNLDPDIDEKLLYDTFSAFGVILQTPKIMRDPETGTSKGFAFVNFASFDASDAAIDAMNGQYLSNRPITVSYSFKKDAKGERHGSAAERLLAANNPLTQTDRPHQLF 209
            + ERNQDATVY G +DEKV E LLWELFLQAGPVVN HMPKDR+T  HQ YGF+EF+SEEDADYAIKIMNMIK+YGKPIRVNKASAHNKNLDVGANIFIGNLDP+IDEKLLYDTFSAFGVILQTPKIMRDP+TG SKG+AF+NFASFDASDAAI+AMNGQYL NRPITVSY+FKKD+KGERHGSAAERLLAA NPL+Q DRPHQLF
Sbjct:    6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
The following BLAST results are available for this feature:
BLAST of TCONS_00008772-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3B41.401e-13386.89Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
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