TCONS_00008772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008772
Unique NameTCONS_00008772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2034

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008772 ID=TCONS_00008772|Name=TCONS_00008772|organism=Clytia hemisphaerica|type=transcript|length=2034bp
ATTAAGTGCTGTACTGTTAACGTTTGTCCCTTTCCTGAGCTCAATGTTGG
TCAATTtcgaattttgtttaaaaaagcataaCTCAAAGGTACAAAGCCTG
CGAATGCTTTTCTTGATAATTGGTGAATATCGGCTAGTTCGTTCTTTTGG
GGGGACTTAAATTGTCAAACTCACATCGGCGCGGAAAGCAACATGGCCGT
TGTTCAAGAAAGAAatcaagaTGCAACAGTCTATTGTGGCAATGTTGACG
AAAAGGTTGGAGAGGCACTTTTATGGGAACTCTTTCTTCAGGCTGGTCCA
GTTGTGAATGTTCACATGCCGAAAGATAGGATCACACAAAATCATCAGAG
TTATGGGTTCATTGAGTTCATGTCTGAGGAAGATGCTGATTATGCTATAA
AAATCATGAATATGATCAAAGTCTATGGTAAACCCATTCGTGTAAACAAG
gcTTCAGCACATAATAAGAATCTCGATGTTGGTGCCAATATTTTCATTGG
TAATCTTGATCCTGATATTGATGAGAAGTTACTTTACGATACTTTCAGCG
CATTTGGTGTCATCCTGCAAACACCAAAGATTATGAGAGATCCAGAGACT
GGTACCTCCAAAGGTTTTGCGTTCGTCAATTTTGCCAGTTTTGATGCGTC
TGATGCAGCCATCGATGCTATGAACGGTCAATACCTTTCCAATAGGCCAA
TCACTGTCTCTTACTCTTTCAAGAAAGATGCCAAAGGAGAACGTCACGGT
TCTGCGGCGGAGCGATTGCTTGCAGCAAACAATCCTTTGACACAAACTGA
CAGGCCCCATCAACTGTTTGCTGACGCACCACCAACACAACCTGAGCCAG
CTCCAGAACCACAACAACCTCCGATGGGAGGGCCTCCTATGCCACCACCC
ATGCCTCCCATGGGAATGCAGCCTCCAATGGGTGGACCTCCAATGGGTGG
ACCTCCAATGCCTCCAGGGGGTGGATGGGGAGGCCCACCACCCAATATGC
CAGGCATGGGACCGCCAATGGGCCCACCTATGGGTTTCCCACCAAATATG
CCTCCACCTGGATtcccaccaccaccaccaggAGGCCAGGATCAGGGTAT
GCGAGGTCCGCCTCCTATGATGGGTGGTCCGCCACCACCAATGGATGGTT
CAAGAGGTCCACCACGCCCTCCACCTCAATTCGgaGGAATGCAGAATCGT
CCACCATGGGGTCAACGTGGAATGGGAGGCCCGCCTCCTATGGGTCCTCC
CCCTGGTATGCGTGGGCCACCACCTAATAATATGGGTTTCAATATGCCTC
CAAGACCTCCTATGCCACCACCACGTGGTCCACCCCCACGCCCTCCACCA
CAATAAGATGTAAAAGGAGGAAGATGGGAACAAATTCGGAATATTCACAA
GAAAAAACGATATGACCTGATAACTCAGCAAGCAGACGTTGACGGCCAAA
ATTGATGACAAAGGCTTGCTTGTGATTCGACCATAGGTTGACACGTGAAA
AGCTATTCTTCAATCTGAGAGAATAATGAACTCTGATTAACAGCTTTCCG
TACAAACATAATTATTTGACCACCTATTATGATGTACATAGACGTACAGA
TAGAAGACCTTCTTCCAGAACGTTACTGGATTAATGTCATCAATGCGATA
GAAACAGTAGTCCTCTCTGTTTCGCTAAATCTAAATTTAGTAATAGTTCT
TTTTCATAGAAATAGAAGGGTAGTTTGCGATCACTGTAAAAAGATTTTCG
AGCCTCAAACAGGTAGAACCTTAGACGAGTTTGtactaaaaaaattgata
taccTGAACAGAACTAACCTTGTATTTGGTATAGATAGGAactttttcac
gattttttaattttctatttttatggtTAAGGCGAAAGAGAAACAAGGCC
GAGAAAGTTGTAtatatgtaatagtttatttcatgttgacgaaaaggcaa
caacaaaggctaataaaagtcaacgctactttacaattaaaaaaactaAT
GTTTTGTTGGCAGCTCATCGTCACTGCTACTGAG
Run BLAST on NCBI

protein sequence of TCONS_00008772-protein

>TCONS_00008772-protein ID=TCONS_00008772-protein|Name=TCONS_00008772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MAVVQERNQDATVYCGNVDEKVGEALLWELFLQAGPVVNVHMPKDRITQN
HQSYGFIEFMSEEDADYAIKIMNMIKVYGKPIRVNKASAHNKNLDVGANI
FIGNLDPDIDEKLLYDTFSAFGVILQTPKIMRDPETGTSKGFAFVNFASF
DASDAAIDAMNGQYLSNRPITVSYSFKKDAKGERHGSAAERLLAANNPLT
QTDRPHQLFADAPPTQPEPAPEPQQPPMGGPPMPPPMPPMGMQPPMGGPP
MGGPPMPPGGGWGGPPPNMPGMGPPMGPPMGFPPNMPPPGFPPPPPGGQD
QGMRGPPPMMGGPPPPMDGSRGPPRPPPQFGGMQNRPPWGQRGMGGPPPM
GPPPGMRGPPPNNMGFNMPPRPPMPPPRGPPPRPPPQ
Run BLAST on NCBI

transcript from alignment at sc0000087:197747..207584-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008772 ID=TCONS_00008772|Name=TCONS_00008772|organism=Clytia hemisphaerica|type=transcript|length=9838bp|location=Sequence derived from alignment at sc0000087:197747..207584- (Clytia hemisphaerica)
ATTAAGTGCTGTACTGTTAACGTTTGTCCCTTTCCTGAGCTCAATGTTGG
TCAATTTCGAATTTTGTTTAAAAAAGCATAACTCAAAGGTACAAAGCCTG
CGAATGCTTTTCTTGATAATTGGTGAATATCGGCTAGTTCGTTCTTTTGG
GGGGACTTAAATTGTCAAACTCACATCGGCGCGGAAAGCAACATGGCCGT
TGTTCAAGAAAGAAATCAAGGTAATTTTTTTTGATTCAATTAATCAATTA
AAAACATTCATTTAAGAATGAAAGGAGACCCAAATATCAGTAGTAAGCTT
CCTTGATGTACACTTTAAACTTGAAAAGTTTATCCTTATGATGAGCCAGA
CTCTCCAACTTGATATTGATAGCTGTAACTTTTTTGTCAATCGTTTTAAA
TGGGCTCTTCCAGAAAAAAATTGATATAGGGGGTGGATGATGGAAATTTT
CAGATAAAAAAAGCACTCGGAAATCCAGTCAATTTTTCAAAGTGCTTCGG
AAATTCTGCTCAATTTTTTATTTGAACCCTTGGAAATTCCACATAATGTG
TCAAAGTTTTGAAAAAGGTATCGGAAATTCCAGATTTTTCCACCAAAAAA
TTGATTTTGTATCGGAAATCCAGGAGTTTCAATTGCTTTAGTATTGGAAA
TCCAGAAATTTCAAAAAAACATTTTGCCTCGCTGTCGTCCACCCCCCTAT
AATGGAACTTTAACTGGAAGAGCCCAATATACTTTTCATTCCTATAATTT
GCTAAACAACAGTTGCGCAGGTTGAGTATAACACCCTACGGTGGCCGAGA
AGGGCCACACAAATTTAAAAATTCCAATACAAAATAACAAATTCAAATAC
AAAATAAAAAAAGTTCAATACAAAATAAAAAGAGTTTACCACAAAATAAA
AAAAGTTCAATACAGTACAAAATAAAAAACGTTCAATACAAAATAAAAAA
TGTTCAATACAAAATGAAAAAAGTTCATGAATATATACATGCGTCAATAT
TACTACCGCGCGTTTTAAAAGTTTGCTCGCGCAGCGCAGGTGGCGTGGGC
AGTCGTGCGGACTAAATATTCGGGTCGGTAAACTCAATATCCAGGAGAGC
AAAATATCCAGGACCACAGATATCTGTAAAGCCCAAAGGGCTAGATAGGC
AACTTTAAGCTTACTTCAGCAAAAAAAAGTGAATATCGGAAAAAAATATT
GTTGCTATTGTTTTCCAAAACCCGCGAAGCTTCTTATTGGTCCATCGCTG
AAATTCTATTGTAATGTCACGTGACTCTGGTAGGAAATCCTTCCAAAGAT
GAGCTTCACTTTTTGACCAAGGCCGCTTATCTAGCCCTTCAGGCTATACT
ATATCATTGTCCAGGACTCGGCAAGATGGCAGCTTTACAAAGGTCTAAGA
AGTGGCGATAAGTTATGCAAAATGAGGTAAGGATTGGAATAACGAACTAA
TCGAACTAATCCGTAGCTTAACCTACCGAACTAATCGAACTCCAATTTCC
GGTAAAATTGTGAGTGGTTCGATTAAGTTTGATTAATTTTTTTAATCGAA
CTTTAATTGTTCGATGAAGTTCAATTAGTTTGATGGTTTGTTTGGTTTGA
CAAGTTCGATTGATCGAGTCTGGTAAATCCGACAGCCCTGCCTAAATCCG
ACCCCCCCCCCCCAAAACCCCCCCCCCCCCCCCAAATAACTGCTATGAAA
AAAAATTCTATGTTTACAAACATTCCCTCTCCAAGTTGAACAATAAACTA
TTGAACAAGAACTCTCAAAACAAAACATCTAACAAGATGTCAATTTTTAA
ATGTGATAAAAAAAGTGCGACTTGTAAAAATAATTACCTCTATTATTCTG
AATCCGTTGTTTGTATTTAAAACGTTAACAATTTTGTAATAAAAAATTAT
GTTTTGTATAAGAAGCAATTATTCTTATTTGGTTCAATTGGTTCAGTGTA
TCAAATCTCTCAGTTTAGTTGAGACTTTGGTAACTTCATTGCGTCACAGC
GAAAGGTTTGTTTTTATTTTAGTTTGTATCTTTGAAAGACCCCATCGGAT
TTAGGCAAGGTTCTCGGATTTAGGACCACTCATGGTATGTTGTGAGCCTG
GATTATTATCATTGACCGTGATGTTTAAGGTTTTAGTTAGTTAGGTTGAT
CTTTTTGGCTCCCATTACTTCAGGCTTCCCTGGAGTCCTCAATTGCAAGA
TTTTGGGTCCCACTTTTATGAGGCGCCATTGTGGACAATATTCAAAGCTC
GGATTATTATATATGCTAAACTTCATTTCTGTGGTCATTTTTTACATATA
TATTCTAAACTTTCAAATATTTATTCTAAGTTTGAAATACATATATATGC
TGAGTCTAAAAACAAATCCTCTCTATTCGATATAACATAATAAACTCTCA
AATGAGATAATGCTATTTTGTATCAGAATTTTTTATTTTGTATACTGTAT
ATTGGGACTTTCTATTTTGTATTGGAATTTTTTATTTTGTTATGGGATTC
TTTATTTTGTTTTGGAATTCTTTATTTTGTATTGGAATTGTAGATTATGT
ATTGAGGTTTTGTATTTGTATTTTGTGTGGCCCTTCTCAACCACCGTACA
CCCGGATTGTAAAACTTTTGTTTGGAAATTTTAAAGCATTAATATATTCC
AGATGTGTTCCAGACGTATATACCGTGAATGTCATAGCTCAAATAAATAT
TGACCTGCAAAGACAAGTTTTTTTTTAAACATGATCTTGTATTATTAAAC
GCTAGCAAAGTAGATATAATTCAGTGTTTGGCTTGGATGAGGTTGCGGAT
CGTGTCTGATACCCTCGGCCTCCTGGGCCCGGTGCTCCGGAAACTTCCGA
AGTTTTCTGAAGCAGCTAAAAAAAACGTTCTAAAAAAATTATAAAAAAAT
ATTTGTCCCCAGGTGATGGACTTTGGTCAAATGAAATACTTACAGTCTTT
TAGGATGACGGTTCAGCCATTAATAAAATTGAATTTGTCACATTATATTC
GAAAGCATCACTGGTAGAAAAATTGAAACTACCATGATTTGGGTGATTTT
TTTAAAATACCTGCGTGAGCAGTTAGTTTTCACATGATTAGCACAGCAAG
AGCTATCGTAATTATATCGCAGATATCTTTTTCTGGTAACACCGGAAGTG
CATTGGAACAATCCTAAGTCTAAAAGGCTTATTTTATCCTAAATATTTGA
TAAATTACGGTTTTTAAACGATATATTTGACATGAAAAATTAATTTGTAT
TGGAAATGTGTCAATTTTTGTGACATCTTACTGTCATGTAAGAAATGTCA
TCATGCTCAATGTGTGAAAATTTTTAGGTGTCAATTTTATTTTTATTTTG
AAGCTATATTTATAAATTAAAATTGGGAATTTACAGAAATTTTCATGCCA
AAAACTCTATTACTTCAGGAGCTATTAATAACAATATTTTTACCCCCAAA
CAGAAACAGCTCCCCCCTAGTAGGAATAGGGTTAAGTAAGTGACCTACAG
TCTAAGCTTAAACTCCTATATGAGGATTAGAAACTAGGCTAGTCTTACCT
CTTTTATCTTTCCTTTTACAACAATACAATGCTGACAAGTTCACACAACA
CATTGACAAGTAATGCCTGTGAGAAAGGTTTATATCACAATCTGCATCAA
AAACGAAAGTGGTCTCTTCTACTGATTGCTTCCCAGCGCTCCTTTGCAGG
TTTATCAAATTTCCACCAATGAGATTGCCACATTTCACTGGGCCCTTCTT
TTTGGCACTCGTGGCGTTTCAGTGCCTTGCACGACGGGCAGCTGTAAAAT
CCCCACCCTTCATATATTTGTTTCAATCGGTGATCCTAAGGCTTAGGTTT
TTTCTCATCTTCAATTTACTGAAGAAAGCGGGAATTTGATTTGAGAGTTA
CTTTAGGCGTACAAACTTTCGCGAGTAGAAACTTTGACTTTGAAACTGCG
ATTTTCGGGAATTTTAACCCTTTTCGCGAAAGTAAATGTTTGATCCCACT
AAAAAATAAACCCCTGTTTTGTGACATTTTTACTATCAGCCACTAAATTG
ACCATAACTTGGGAAAATTATGTGGCTTACACTTAGGATCGCTTTGATGG
TTAAGCTGAGGAAATTAGCTATCCATTGCTTGAAGGGCAAATTTTTGTGG
CTTACTTAAAGGGGAGTTACAAGCAAATAAAGTTTGGGCAAAAAATNTTA
AAGGGCGAATTTTTGTGGCTTGCTTAAAGGGGAGTTACAAGCAAGTAAAG
TTTGGTTAAAAAATGTGGCTTACTGGTCATGTGGCTTACCATACCAAGAA
ATTTTGAAGGCTGAGTTCTCAATAATGGAAATAGTCAAAAATGTGGCTTA
CACAAGGGAAATAGGTGAATAGGTGAAATAAAGGTGAAATCTTATGTCTC
ACAAGTTTTTGGCACTCAATCATTAAAGTATAACACTAGTAGGTGTAAAA
AATTACAAAAATTTAATTGTAAGTACAATTTTGTGGCTTACAAAGTCACA
TTAAAAATTATCGAAAAGCAAGCCAAAAAAAAGTACATTTAACAGCTAGA
AAGTATGTACATTTAACTTTTTCAATCGAAATAGGGGATTTGGAAAACTT
TCTATGTTTGGTTTCAGCCCTGTGAATCCAGGTCGGCATTCGGCAATGCC
GACCTGAAAGCCGACGTAACCTGAGCTGAAGTCGGCTTTTGTTTGCCGAC
GTAATTTACACTCTAGGTCGGCGTGCCGACAAAAGAAATGTTTTGGGTCG
GCAAAGCCGACCTAAAGAGGAAAAATATTATTTGTTAGGTTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
CTTTGCCGACCTAAACAAGCTACTTAGGACGGCTTTGCCGACCTAAAATG
ACCTCTAGGTCGGCAAAATTTTGCCGGCCTATGGCCGGTTTTGGTCGGGT
GCCGATATGATTTCTTCTGAATTCACAGGGCTGTGGTTTTTTGCACAAAC
CCCTGTAACTATGGGGAGCACCCCGTTGCTAAGATGTTGGCTTGAAATCG
AAAATGAAACCACTGAAAATGAAAAAAAAATCAGCCCGTACTCCAAATCC
CGTAATCTCGTTATAGGAGTTTAAGCATAGACTGACCTACCCATCTAAAA
AATTTTGTAGCTGCTGTAAAATGTGATAAAACTAAAGTGCTCTAATCTGG
AGATATAAACTTTTCAGAGCCAAGTTTGTATCTCAAAAATGATCAGTAAG
ACATTTCCGAACGATTGATATTATTCACTTCTCCTCAAATGAGAAATCCA
GGTGGCTCAGAAACTTAAATATTCCAAGAAAGGAACCAGAAAAACCACAA
AAAAGTTACCTTAGGGTATAAATTTTCGCGGGGACAGGTGGGGATTATAT
TTCGCGAATTTTTCCGAAATTCGCCTTTTTCACGCTATATAATCCCTCGC
GAAAATTTTCAAACTCTCATCTCTCGCAAAATTCGCAAAAATTTAGCTAA
GAAACTCTCTTAAATAAGTCTCCATTACTCGAATGTCTCTATAATTTGAA
TAACTTTTCATTCCTTGTAGCCGTTCGAGTTATCAAAGACTCACACACTG
GGGGTGTACACTGTACACACAAAATCTTGTTATCAAACTAACGAAAAATC
TGAAAATCAAAGCGCGAATCAAAGGCCTTCAAAATTTTCGTGTGGACAAA
ATTTTGCAAAAATGGCCAAAATTTGTCCAAAATTAATCCATGCAAAAATT
CATCCACCTAAGGTATTTTGCAAGGGAAGCTGCCTCGCAAAAATTAGTTG
TCGCAAAAATTAATTCCCTTAAGGTAGGCTTAAAAATTTGTTATTTCAGA
CGCTAGCAATTACTTATAAAATATGTACATCAAAGCGTTCTTAATTTTGC
AAAAAGTGGAAAGGGTCTGGAATCTTTTTAGTAGGGTTACACTGAAAAAT
GAAATGTAAAGAAAATTGTTTGCTTTTTTTGTTTTCTAGATGCAACAGTC
TATTGTGGCAATGTTGACGAAAAGGTTGGAGAGGCACTTTTATGGGAACT
CTTTCTTCAGGCTGGTCCAGTTGGTATGTTCTTTATTTATTATTCACCCA
AAAATTTCGCCCATATGAACAATTCAAGAAAAATATTGTCCATGGAAGGG
GGTGAGGGTAGATCTTTCTTAAAAAATAATGATCGTCCATTGTATATTAC
ATGTAGAAAAAGTCTTGTCTTATTCCTATTTTCTTAAAGTTCTATTTTTT
GTTCACATTGTTACTTTCCCCTCAGTGAATGTTCACATGCCGAAAGATAG
GATCACACAAAATCATCAGAGTTATGGGTTCATTGAGTTCATGTCTGAGG
AAGATGCTGATTATGCTATAAAAATCATGAATATGATCAAAGTCTATGGT
AAACCCATTCGTGTAAACAAGGTAAGGGCTTTTTGCTGTTTCAAAATCTA
GAGATGTATTAAGGTGGTCGTTAAAAAATTCTGAAAAAAGAAGTATTACA
TGATTGTGTCTAGAACATGGAGGTAGAATAAAGTAAAAATAAGATTTAGA
TAATAGGGACAAAAGATGTTTGTCTAATCAGTACTGTTGGCTTAAATGTG
AGTTCTTTTTTAAATTTTGTCAATGACGAGTAATTTATACTAATTGTAGT
TGTACACTTGTTTTTTTTGTAAGGCTTCAGCACATAATAAGAATCTCGAT
GTTGGTGCCAATATTTTCATTGGTAATCTTGATCCTGATATTGATGAGAA
GTTACTTTACGATACTTTCAGCGCATTTGGTGTCATCCTGCAAACACCAA
AGGTATGTTTGATAACTGTCTTATTGTCATTTTTCCCACTAAGAATTAGT
TTTTGCAAACAGTGAAATGTAACCTCACAAATGAAATTTTGTTATGATAT
TATGTAAAGTATCTACCAAGCCAGCCAATGGCATTAAAATCATCACAGCT
AATAATTTATGACTGCTGATGACCATGTAATATTGCCAATGTTGTGATAG
GAACACCTATACTACATATTTGTTTCTTCATGAAATCGTACGTAGTATGA
ATGGTTAATCAATCTGTCGACTAGACCTGACTCGATTCATTTTCTTTCTC
TACATTTTCAGATTATGAGAGATCCAGAGACTGGTACCTCCAAAGGTTTT
GCGTTCGTCAATTTTGCCAGTTTTGATGCGTCTGATGCAGCCATCGATGC
TATGAACGGTCAATACCTTTCCAATAGGCCAATCACTGTCTCTTACTCTT
TCAAGAAAGATGCCAAAGGAGAACGTCACGGTTCTGCGGCGGGTAATGTT
CCTTTAATACTCTATAAATCTTTGAACTATCAATCTCTTTTTTATCAAGA
CGGTTGGCTCTAATTAATTCAAGATTAAAAAGGAAAGCGAATTCTGACCA
ATATAATCAACTATAGAGAGATTGAATTATGGAAAGCACTCTACCAGTGT
TTCTCCATGATGGCAATTGAGAATTGGTTCAAATGATAGAAAGATTCAAA
TGATGGATGTTTTGATTAGCTATATTTTTAAAAATTTGTTTTCTTTCCTT
TTCCAGAGCGATTGCTTGCAGCAAACAATCCTTTGACACAAACTGACAGG
CCCCATCAACTGTTTGCTGACGCACCACCAACACAACCTGAGCCAGCTCC
AGAACCACAACAACCTCCGATGGGAGGGCCTCCTATGCCACCACCCATGC
CTCCCATGGGAATGCAGCCTCCAATGGGTGGACCTCCAATGGGTGGACCT
CCAATGCCTCCAGGGGGTGGATGGGGAGGCCCACCACCCAATATGCCAGG
CATGGGACCGCCAATGGGCCCACCTATGGGTTTCCCACCAAATATGCCTC
CACCTGGATTCCCACCACCACCACCAGGAGGCCAGGATCAGGTTAGAATC
TATTAAGTATCTTCCCGCTCAAATCTAAACATGTTCCTTTTTGCAGATTG
CCATGTGTTTTCATTATTATTAAAGAAAACATGTTTTTTATTTGGCTCCA
AATTTTGAGATTATTTAATTCTTTATTCTTTCTATCTCAGGGTATGCGAG
GTCCGCCTCCTATGATGGGTGGTCCGCCACCACCAATGGATGGTTCAAGA
GGTCCACCACGCCCTCCACCTCAATTCGGTAGGCTAGTTTAGATAAGCTT
TCTTCCTTGCATTTCTTTCTTTTTAACAGCATTCTGCGGAAGGTCAACTG
TCGACTGTCTAAAGCCAATGCAGTCTGTCTAAAGTCAATGTTATGTCTTA
ATTTGAAGCTAATGCTTACTTCTGTGTGATCTTTTTTTCAATTTGAAGAT
TTAAATTTTCTGTCGATCGCATCAAAACGTTAGATGAACGTCAAAAACAA
TGTTTTGTTTTATCATGAGAAGATGAAAATATAGAAATAAGACAGTCGGT
ACCACTACATGAAAAAGGCAACTATTGCCTTAACGGGAAGTAATTTAGTG
TTCCCGACTGTAAGAATTAATCATGAATGCAAATTGTTATGCTTGTGAAA
AATCATCCCGGGGAATTTACTTTTCTTGTTTTTTTCTTCAGGAGGAATGC
AGAATCGTCCACCATGGGGTCAACGTGGAATGGGAGGCCCGCCTCCTATG
GGTCCTCCCCCTGGTATGCGTGGGCCACCACCTAATAATATGGGTAAAGT
CGTTTTTTGGATTTTTTATCATCGAAAATCTCACTTGTTTAATTCTACTT
TCGTTTTAGTTTGATTGGGAACCCTTTTCTTCTTATTATTATTGTTGTTA
TTGTTTGAAATTAGAATTATTTTCGATTCTTATTAACTTCTTATCAAGAA
TAGAAGGTTTTTTTAAATAGAATCAACACATGAAGAAGTTTTCAATCATG
CATAGAAATCTCAGTAGATCAATTCGTAATTTTCATTAGGTTTCAATATG
CCTCCAAGACCTCCTATGCCACCACCACGTGGTCCACCCCCACGCCCTCC
ACCACAATAAGATGTAAAAGGAGGAAGATGGGAACAAATTCGGAATATTC
ACAAGAAAAAACGATATGACCTGATAACTCAGCAAGCAGACGTTGACGGC
CAAAATTGATGACAAAGGCTTGCTTGTGATTCGACCATAGGTTGACACGT
GAAAAGCTATTCTTCAATCTGAGAGAATAATGAACTCTGATTAACAGCTT
TCCGTACAAACATAATTATTTGACCACCTATTATGATGTACATAGACGTA
CAGATAGAAGACCTTCTTCCAGAACGTTACTGGATTAATGTCATCAATGC
GATAGAAACAGTAGTCCTCTCTGTTTCGCTAAATCTAAATTTAGTAATAG
TTCTTTTTCATAGAAATAGAAGGGTAGTTTGCGATCACTGTAAAAAGATT
TTCGAGCCTCAAACAGGTAGAACCTTAGACGAGTTTGTACTAAAAAAATT
GATATACCTGAACAGAACTAACCTTGTATTTGGTATAGATAGGAACTTTT
TCACGATTTTTTAATTTTCTATTTTTATGGTTAAGGCGAAAGAGAAACAA
GGCCGAGAAAGTTGTATATATGTAATAGTTTATTTCATGTTGACGAAAAG
GCAACAACAAAGGCTAATAAAAGTCAACGCTACTTTACAATTAAAAAAAC
TAATGTTTTGTTGGCAGCTCATCGTCACTGCTACTGAG

Coding sequence (CDS) from alignment at sc0000087:197747..207584-

>TCONS_00008772 ID=TCONS_00008772|Name=TCONS_00008772|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at sc0000087:197747..207584- (Clytia hemisphaerica)
ATGGCCGTTGTTCAAGAAAGAAATCAAGATGCAACAGTCTATTGTGGCAA
TGTTGACGAAAAGGTTGGAGAGGCACTTTTATGGGAACTCTTTCTTCAGG
CTGGTCCAGTTGTGAATGTTCACATGCCGAAAGATAGGATCACACAAAAT
CATCAGAGTTATGGGTTCATTGAGTTCATGTCTGAGGAAGATGCTGATTA
TGCTATAAAAATCATGAATATGATCAAAGTCTATGGTAAACCCATTCGTG
TAAACAAGGCTTCAGCACATAATAAGAATCTCGATGTTGGTGCCAATATT
TTCATTGGTAATCTTGATCCTGATATTGATGAGAAGTTACTTTACGATAC
TTTCAGCGCATTTGGTGTCATCCTGCAAACACCAAAGATTATGAGAGATC
CAGAGACTGGTACCTCCAAAGGTTTTGCGTTCGTCAATTTTGCCAGTTTT
GATGCGTCTGATGCAGCCATCGATGCTATGAACGGTCAATACCTTTCCAA
TAGGCCAATCACTGTCTCTTACTCTTTCAAGAAAGATGCCAAAGGAGAAC
GTCACGGTTCTGCGGCGGAGCGATTGCTTGCAGCAAACAATCCTTTGACA
CAAACTGACAGGCCCCATCAACTGTTTGCTGACGCACCACCAACACAACC
TGAGCCAGCTCCAGAACCACAACAACCTCCGATGGGAGGGCCTCCTATGC
CACCACCCATGCCTCCCATGGGAATGCAGCCTCCAATGGGTGGACCTCCA
ATGGGTGGACCTCCAATGCCTCCAGGGGGTGGATGGGGAGGCCCACCACC
CAATATGCCAGGCATGGGACCGCCAATGGGCCCACCTATGGGTTTCCCAC
CAAATATGCCTCCACCTGGATTCCCACCACCACCACCAGGAGGCCAGGAT
CAGGGTATGCGAGGTCCGCCTCCTATGATGGGTGGTCCGCCACCACCAAT
GGATGGTTCAAGAGGTCCACCACGCCCTCCACCTCAATTCGGAGGAATGC
AGAATCGTCCACCATGGGGTCAACGTGGAATGGGAGGCCCGCCTCCTATG
GGTCCTCCCCCTGGTATGCGTGGGCCACCACCTAATAATATGGGTTTCAA
TATGCCTCCAAGACCTCCTATGCCACCACCACGTGGTCCACCCCCACGCC
CTCCACCACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004916XLOC_004916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008772-exon-sc0000087-1575043694:207365..207584TCONS_00008772-exon-sc0000087-1575043694:207365..207584Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1575043694:201312..201395TCONS_00008772-exon-sc0000087-1575043694:201312..201395Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1575043694:200964..201109TCONS_00008772-exon-sc0000087-1575043694:200964..201109Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1575043694:200583..200711TCONS_00008772-exon-sc0000087-1575043694:200583..200711Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1575043694:200093..200273TCONS_00008772-exon-sc0000087-1575043694:200093..200273Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1575043694:199494..199828TCONS_00008772-exon-sc0000087-1575043694:199494..199828Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1575043694:199257..199344TCONS_00008772-exon-sc0000087-1575043694:199257..199344Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1575043694:198742..198843TCONS_00008772-exon-sc0000087-1575043694:198742..198843Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1575043694:197747..198495TCONS_00008772-exon-sc0000087-1575043694:197747..198495Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:207365..207584TCONS_00008772-exon-sc0000087-1510915933:207365..207584Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:201312..201395TCONS_00008772-exon-sc0000087-1510915933:201312..201395Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:200964..201109TCONS_00008772-exon-sc0000087-1510915933:200964..201109Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:200583..200711TCONS_00008772-exon-sc0000087-1510915933:200583..200711Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:200093..200273TCONS_00008772-exon-sc0000087-1510915933:200093..200273Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:199494..199828TCONS_00008772-exon-sc0000087-1510915933:199494..199828Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:199257..199344TCONS_00008772-exon-sc0000087-1510915933:199257..199344Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:198742..198843TCONS_00008772-exon-sc0000087-1510915933:198742..198843Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1510915933:197747..198495TCONS_00008772-exon-sc0000087-1510915933:197747..198495Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:207365..207584TCONS_00008772-exon-sc0000087-1491911889:207365..207584Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:201312..201395TCONS_00008772-exon-sc0000087-1491911889:201312..201395Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:200964..201109TCONS_00008772-exon-sc0000087-1491911889:200964..201109Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:200583..200711TCONS_00008772-exon-sc0000087-1491911889:200583..200711Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:200093..200273TCONS_00008772-exon-sc0000087-1491911889:200093..200273Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:199494..199828TCONS_00008772-exon-sc0000087-1491911889:199494..199828Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:199257..199344TCONS_00008772-exon-sc0000087-1491911889:199257..199344Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:198742..198843TCONS_00008772-exon-sc0000087-1491911889:198742..198843Clytia hemisphaericaexon
TCONS_00008772-exon-sc0000087-1491911889:197747..198495TCONS_00008772-exon-sc0000087-1491911889:197747..198495Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008772-proteinTCONS_00008772-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:197747..207584 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
68.8945	67.2583	66.8688	68.4746	132.127	105.506	101.172	103.653	83.9876	89.9714	84.965	79.2085	86.1962	100.083	74.9072	82.2942	85.9115	86.1418	42.3219	43.0534	68.8661	70.2713	69.4536	72.8703	101.228	110.274	49.7116	59.1147	44.3608	45.9011
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034159SF3B4_RRM2
IPR034158SF3B4_RRM1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00008772 vs. Swiss-Prot (Human)
Match: SF3B4 (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 5.909e-112
Identity = 179/206 (86.89%), Postives = 193/206 (93.69%), Query Frame = 1 
Query:  202 VQERNQDATVYCGNVDEKVGEALLWELFLQAGPVVNVHMPKDRITQNHQSYGFIEFMSEEDADYAIKIMNMIKVYGKPIRVNKASAHNKNLDVGANIFIGNLDPDIDEKLLYDTFSAFGVILQTPKIMRDPETGTSKGXXXXXXXXXXXXXXXXXXMNGQYLSNRPITVSYSFKKDAKGERHGSAAERLLAANNPLTQTDRPHQLF 819
            + ERNQDATVY G +DEKV E LLWELFLQAGPVVN HMPKDR+T  HQ YGF+EF+SEEDADYAIKIMNMIK+YGKPIRVNKASAHNKNLDVGANIFIGNLDP+IDEKLLYDTFSAFGVILQTPKIMRDP+TG SKG+AF+NFASFDASDAAI+AMNGQYL NRPITVSY+FKKD+KGERHGSAAERLLAA NPL+Q DRPHQLF
Sbjct:    6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLF 211
The following BLAST results are available for this feature:
BLAST of TCONS_00008772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3B45.909e-11286.89Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
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