TCONS_00008774-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008774-protein
Unique NameTCONS_00008774-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008774-protein ID=TCONS_00008774-protein|Name=TCONS_00008774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MASSSLFRKIGSTCRTVISRNASYDATRPALAINKNTKVICQGFTGRQGT
FHSEQAIAYGTNMVGGVNPKKAGSEHIGLPVFASVREAREATNCDATVIY
VPPPGAAAAIIEAVEAEVPLITCITEGIPQQDMVKVKHVLERQSKSRLIG
PNCPGIIKPGECKIGIMPGHIHRPGSVGIVSRSGTLTYEAVHQTTHVALG
QSLCVGIGGDPFNGTNFVDCLDVFLKDPETKAMIMIGEIGGAAEERAAEF
LKQNNVGENKKPIVGFIAGLTAPPGRRMGHAGAIISGGKGGAEDKIKALE
DAGVVVTRSPAQLGSTLRRVFDDFYLD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004918XLOC_004918Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008774TCONS_00008774Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003781CoA-bd
IPR005810CoA_lig_alpha
IPR005811CoA_ligase
IPR016102Succinyl-CoA_synth-like
IPR017440Cit_synth/succinyl-CoA_lig_AS
IPR033847Citrt_syn/SCS-alpha_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0048037cofactor binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0048037 cofactor binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01798SCOASYNTHASEcoord: 206..224
score: 64.55
coord: 237..250
score: 75.42
coord: 273..290
score: 82.43
coord: 110..127
score: 57.68
NoneNo IPR availableGENE3D3.40.50.720coord: 27..148
e-value: 9.5E-46
score: 154.9
IPR003781CoA-bindingSMARTSM00881CoA_binding_2coord: 32..128
e-value: 3.7E-31
score: 119.5
IPR003781CoA-bindingPFAMPF02629CoA_bindingcoord: 34..127
e-value: 1.1E-29
score: 102.9
IPR005810Succinyl-CoA ligase, alpha subunitPIRSFPIRSF001553SucCS_alphacoord: 26..323
e-value: 1.4E-127
score: 422.6
IPR005810Succinyl-CoA ligase, alpha subunitTIGRFAMTIGR01019TIGR01019coord: 33..320
e-value: 2.1E-135
score: 448.7
IPR005810Succinyl-CoA ligase, alpha subunitHAMAPMF_01988Succ_CoA_alphacoord: 29..321
score: 41.165
IPR005811ATP-citrate lyase/succinyl-CoA ligasePFAMPF00549Ligase_CoAcoord: 180..305
e-value: 1.6E-22
score: 79.9
IPR016102Succinyl-CoA synthetase-likeGENE3D3.40.50.261coord: 149..324
e-value: 1.1E-56
score: 190.7
IPR016102Succinyl-CoA synthetase-likeSUPERFAMILY52210Succinyl-CoA synthetase domainscoord: 152..320
IPR017440ATP-citrate lyase/succinyl-CoA ligase, active sitePROSITEPS00399SUCCINYL_COA_LIG_2coord: 269..282
IPR033847ATP-citrate lyase/succinyl-CoA ligase, conserved sitePROSITEPS01216SUCCINYL_COA_LIG_1coord: 181..210
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 24..151

Blast
[Close]
BLAST of TCONS_00008774-protein vs. Swiss-Prot (Human)
Match: SUCA (Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 403.29 bits (1035), Expect = 2.499e-141
Identity = 219/303 (72.28%), Postives = 259/303 (85.48%), Query Frame = 0 
Query:   20 RNASYDATRPALAINKNTKVICQGFTGRQGTFHSEQAIAYGTNMVGGVNPKKAGSEHIGLPVFASVREAREATNCDATVIYVPPPGAAAAIIEAVEAEVPLITCITEGIPQQDMVKVKHVLERQSKSRLIGPNCPGIIKPGECKIGIMPGHIHRPGSVGIVSRSGTLTYEAVHQTTHVALGQSLCVGIGGDPFNGTNFVDCLDVFLKDPETKAMIMIGEIGGAAEERAAEFLKQNNVGENKKPIVGFIAGLTAPPGRRMGHAGAIISGGKGGAEDKIKALEDAGVVVTRSPAQLGSTLRRVFD 322
            R+ SY A+R  L ++KNTK+ICQGFTG+QGTFHS+QA+ YGT +VGG  P K G  H+GLPVF +V+EA+E T   A+VIYVPPP AAAAI EA+EAE+PL+ CITEGIPQQDMV+VKH L RQ K+RLIGPNCPG+I PGECKIGIMPGHIH+ G +GIVSRSGTLTYEAVHQTT V LGQSLCVGIGGDPFNGT+F+DCL++FL D  T+ +I+IGEIGG AEE AAEFLKQ+N G N KP+V FIAGLTAPPGRRMGHAGAII+GGKGGA++KI AL+ AGVVV+ SPAQLG+T+ + F+
Sbjct:   39 RHCSYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFE 341
The following BLAST results are available for this feature:
BLAST of TCONS_00008774-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUCA2.499e-14172.28Succinate--CoA ligase [ADP/GDP-forming] subunit al... [more]
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