TCONS_00008774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008774
Unique NameTCONS_00008774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008774 ID=TCONS_00008774|Name=TCONS_00008774|organism=Clytia hemisphaerica|type=transcript|length=1341bp
CTTAAGTTGTAAAGCTATACTTTGAAAGTACATCTTCGGACTTTTTTTCA
AGATGGCGTCCAGTTCACTCTTCCGAAAGATCGGTTCCACCTGCAGAACA
GTGATTTCTCGCAATGCCAGCTATGATGCAACACGGCCAGCTTTAGCTAT
CAATAAGAATACAAAAGTTATTTGTCAAGGATTTACTGGAAGACAGGGTA
CATTTCACAGCGAACAAGCTATAGCTTATGGAACAAATATGGTCGGTGGT
GTCAACCCAAAGAAAGCTGGAAGTGAACATATTGGTCTCCCCGTTTTTGC
TAGTGTCAGAGAgGCAAGAGAGGCAACAAATTGCGACGCCACAGTCATTT
ATGTCCCTCCTCCTGGTGCAGCTGCAGCTATCATTGAAGCTGTCGAAGCG
GAAGTCCCTCTGATTACTTGTATCACTGAGGGTATCCCACAACAAGATAT
GGTTAAGGTTAAACATGTTCTGGAAAGACAAAGCAAATCTCGGTTAATTG
GTCCCAACTGTCCTGGAATCATTAAGCCAGGAGAATGCAAGATTGGTATA
ATGCCTGGGCACATTCATCGACCTGGATCAGTTGGTATTGTGTCCAGATC
TGGTACACTCACCTATGAAGCTGTCCACCAAACCACACACGTTGCTCTCG
GACAAAGTCTCTGCGTCGGAATTGGAGGTGATCCTTTCAACGGAACCAAC
TTTGTAGACTGTTTAGATGTCTTCTTGAAAGACCCTGAAACTAAAGCTAT
GATCATGATCGGCGAAATCGGAGGTGCTGCCGAAGAGCGAGCCGCTGAAT
TCCTTAAACAAAATAAtgttggtgaaaataagaaaccTATCGTTGGTTTC
ATCGCTGGTTTAACGGCACCACCAGGCCGACGTATGGGCCACGCAGGTGC
CATTATTTCCGGTGGTAAAGGTGGAGCCGAAGATAAAATTAAAGCTTTAG
AAGATGCAGGTGTTGTAGTTACCAGATCTCCTGCTCAACTTGGTTCTACA
CTTAGACGGGTCTTTGACGACTTCTATTTGGACTAAATTACTTTTGTTTG
TAGTCTAGTTTTGTagatattttaataaaaaaattgttttaattttgata
aaaatgactGTGAAAGAGGTATCTCACAATGACCTTCTTTATCATatatt
tttgacgttttttttccgcgaaaagtgaattttgttGTCCCAATAAAAAA
CCACTGACCTAGCAATCGTACATATCAATTAATCTTTATTAATGTAGAAa
ccaaatattcacaaatcGAATGTAAAATGATATATTCCAAAAAGTTCTTC
TGGGAATGAGTTGAGAAAACATCTACAATTTGTGATCGAAC
Run BLAST on NCBI

protein sequence of TCONS_00008774-protein

>TCONS_00008774-protein ID=TCONS_00008774-protein|Name=TCONS_00008774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MASSSLFRKIGSTCRTVISRNASYDATRPALAINKNTKVICQGFTGRQGT
FHSEQAIAYGTNMVGGVNPKKAGSEHIGLPVFASVREAREATNCDATVIY
VPPPGAAAAIIEAVEAEVPLITCITEGIPQQDMVKVKHVLERQSKSRLIG
PNCPGIIKPGECKIGIMPGHIHRPGSVGIVSRSGTLTYEAVHQTTHVALG
QSLCVGIGGDPFNGTNFVDCLDVFLKDPETKAMIMIGEIGGAAEERAAEF
LKQNNVGENKKPIVGFIAGLTAPPGRRMGHAGAIISGGKGGAEDKIKALE
DAGVVVTRSPAQLGSTLRRVFDDFYLD
Run BLAST on NCBI

transcript from alignment at sc0000087:285498..301023-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008774 ID=TCONS_00008774|Name=TCONS_00008774|organism=Clytia hemisphaerica|type=transcript|length=15526bp|location=Sequence derived from alignment at sc0000087:285498..301023- (Clytia hemisphaerica)
CTTAAGTTGTAAAGCTATACTTTGAAAGTACATCTTCGGACTTTTTTTCA
AGATGGCGTCCAGTTCACTCTTCCGAAAGATCGGTAAGAATTTTCAATTT
TCATAAACATCTCAACTGAATTTGTTAACTTTTATTTTACTAACAAGACA
TTAAAATTGATGTTTCTCATAGATGAATAGATATCAACCTGTTCATATTG
ATTTCATTTTTACAGTGACACTTTTCAAAATATAACTCCATATATAAATG
CTCCACTCTCTCATTTAGTCTCTGGGAGGTAAACAAACCCGTTTTTGGTT
TTCTTAAGTTCTGCGAATAGAATCCTTTCAAATTTTAATAAATTAATTCT
TTCTACCATAAAACTTGGTCTAAATTAGTCTGAAATTTTTTAAGGGTGCA
ATTACATGCTATATCACTATTTATTTGAATGAGTACAGTGCAGACAGAGG
TGTGCATTGAGAGTGAGACTCGCGCATTTCCAGACTGTTTCACGCATTTC
CAGACTGTTTCATGCATTTCCAGATTGTCTCACGCAATTTTTAAAAAGTT
TGATTTCTCAAGCATTTTTAAATTTTGAGAAGAATTTCCTTGTTTTTCCT
ATTTTTGGAAAAAAATTTCCCCTATATTCTAATTTTCGAAAAATATTTTC
CCCGATTTTTCGATTTTCGATTCTTGGAAAAAATAATCCCCCATTTTCCA
ACTTTTGGAACAAAATTGCCCAAATTTCCGATTTTTTGGAAAAATTTCCT
GATATCCGATATCGGAAAACCGGAAAAACTGGGTTATGAATTCGGATTTT
GCTTTGAAATTTTTATCTCACGCAAAATGAATATCTCAAGTTGGCAGGTT
TGTGATTGCTAAGTATGGCGCACCGATATGGCGCGCCAAATTACTTTTTA
TTACCAACTTTTTTTTCGACGTCAACTTTTTTTTTTCAACACCAACTCTT
TTTTTCGACACCAACTTTTTTTTTTGACACCAACTTTTTTTTTCGACACC
AACTTTTTTTTTTCAACGCCAAATTTTTTTTTTCAACACCATCTTTTTTT
TTCAATACCATTTTTTTTTTATCTAACGACTTTTATTTTCTAATCAGTGT
AGCTCTAAAGCTCTAAAACAGCATCTAATAACATGAAAACCAGAATATGA
TTCTTCAATGGGAATCAAAACTATAAAGTGCATTTACAAACATGAATTTG
TCAGATCTAACAAAATTTATAATTGCACTGTCATCATTGACAATAAAACA
AACAATATTCTGTCAAGAGCTTTGTAAACATTTCCAAAACTTCTATCGAA
ATGATCTATCACAGCTCAGTCTTCCAATTTTAGAGTCAGAGGATTAAGCC
GAGAACTCTCGCAGAGCACCCGTGCTCCCGCGCGGCGCGCACCGCGGGGA
TGAAAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGT
CATCAATGGATAGTATTCAATTATCATTATCCCTTTATTTTCATTCCTAG
AACTTTTGCAAAAAAAAGGAAAAATAGAAAGGTTGTATTTTTTACTGCTC
TATTCACATACTGAATTTGAAAGATCTTCTATGTGGCATTTTTTTGCAAA
CTTCAAAAAACTGATTTTTATCCCGCCTTTGCAGGATTTTGGCTCAAGTG
CTTGAGTGCAGCATAGGGTACAAAGTCCAAATATGCGTTTCCCGTAATTT
TTATATGAAGAGTTAGGTCTACACTGCCAATACTAACTCTTGTCTCGATT
ACCTGTTAATGTTGATTACTCAAAGTGTAAAAAGGCCTTTACGTTTATTA
TATAGCGGGCATCCGATCACAGATTTCTGTAAAGCCCAAAGGGCCAGATA
GAGTGCTTTAAGCTCTTCCAATCAAAAAAAAAGTGATCATCAGAAAAAAT
ATTTCTGCTACTGTTTCCGAAAATCCGCAAAGCTTCTGATTGGTCAAGCG
CTGAAATTCTATTATAATGTCACGTGACTTATACGACACACTTTTGAGCA
AAAGCACGCCATCTAGCAAATCTTTAACCCTTCTCAGGCAAGAGAAATTG
AATCTACTTATTTCCCAGCTACTTATTTTCCGAAACGCGCATAGAACGCA
CCGCAATCATGAGGACGGATTGTATCTAGTGATTCTTTTGTTTTGGAGGA
CTACATTTTGTGAAATCTAGCGATAGGAAAAAACAACAGAAAAAAAAACA
GAAAGTTAACAAACCAAATTTGAAGTTAAACACAAAGTACTTAACTATAA
GGAATGACTTCAACCAAAAGTTCAACCAAAACGAACTTCCAGACTTCGTC
CTAGTCAGTATTTGTGCTGGTGTTTCAGCTTTTTATTTTTTCAATTCCAT
CTGGAAAAGTTTTACATGGCGGGCAATTTGTTTAAGCCCCGGACACACAT
TATATTAATCAGGTTGGGTGAATGAGACAATAACCAAAAAGGTTGACTTC
GTAAAAAAGAAGTTTTGTATCCGGGTCTCGAAAAAAAGCTGGTAACGGAA
AAAAAGTTGGTGTCCGAAAAAAAAAGTTGGTGTCGGAGAAAAGATGGTAT
GAAAAAACATGAAGTTGGTCGCAAAAAATGAAAAGTTGGTATCAAAAAAA
AAATTGATGTCAAAAAACAAAAGTTGGTGTCGAAAAACAAAAAGTTGGTA
GTAAAAAGTAATTTGGTGCGCCATAGCTAAGCGTGCAATTGCTTCCTTAC
TAGTCAATCATTAAAAAAAACTTTATTTGCTTCCGATCACTTACTTTGTT
GAAATCAGAAAGCCTTGGACTATCTTACTCAACATTTATCGTAGAAAATG
ATTGTGTTAAAGACTTTTGCCCATTTGACTAGTATTCGCCAGATTTTGAA
AAATCTGAACCCTCAAGCAATCTCAACTGGGGCGGGATCATCATAACATA
AGCAGGCAATTGCACACAGGTTTAAATTTTAACTGTGTAATTGCGCGCTT
ACACAGTGAGACTGGAACTTCGATTTTTGAGGATTACGATTTTACCAGCT
TTTTAGCAATTTTTGCCTTGCTAACCCAAATCTCACAACCTCTTTACCTT
AAGGAAGATCGAAATTAGAGTTTTTCAGGACAGGGTCTCCAAAAAGAATG
CATAGCGGAAATTTTTCATCTTCGCAGGATCGATTCTCAACAACAAAATA
CATCTTTTGGTTATTGGGTTTGTTTCTGACATTTTTTCCTTCAAAGAATA
TCGATCACTTTCCTTTTCCCCTTGAGCGCACGAGAAAAAAATGATTAGCT
CATGTTTTCGCGCGGGTGAATAAAGATGAGACAGCAATTTTGCACTGAGG
GTGCTACTTAGTTTTCGCCTTATTTTGCGCCCTCGAATGAATGGTCCAAA
TGCGGGGTATTCTAAATGATAAACTATGTCGTTCTGTAAGTGTTTTTTTT
TTCTGAGAGGTACAAATAGTATATTGAATATTATTAACCTATTAATTTAA
TTATTTTTGAGCGCAAATTTAAATATATGTTTAATTAAAAAACAAATAAT
ATATACCGTGAGTGGTCCTAAACCCGACAGCCCTGCTAAAATCCAATGGG
AGCTTTCAAAGATACAAACTAAAATAAAAACAAACCTTTCGCTGTGACGC
AACAAAGATACCAAAGTGTCAACTAAACTACATTGAACCCATTGAACCAA
ATAATAATTGCTTCTTATAAAACATAATTTTTTATTGCAATATGTACAAC
ATCATAAATGACAACAATAGTAACAGCATCATAAAAAGTAATTATTTTAT
TATTTTCCTAAAAATATATTGGTATCAAGAATTGGAACCCCTCGCTGGTA
TTCTTGTACCTCCCAAACAATTTTATACACAACACATTCAATTTCTTCAA
CACGCCTATTTGGCTTAGGAATGCGAACTACCAATGTCTAAAGTTTTCAA
TATATCTAACAGACTATTTGAAAGACTGTAAAAAAGTTCAAATTCCTAAA
TAGTTCTACTATGTTCTGTGGAAAAATCATAACCATTAGTGAAATATTCT
TTAATTTAAGACTGAAGACAAAATTTGAATACTAAACCTTGAGCACAAAA
AATGCATTTTTAAACACTTTTTCCAACAAAAGATAAGTAACTTTTATAGA
CTGACCTTCCCCAATAATCACAAAGAACAGGAGTTGTAGGCTTGGAGCAA
AGGAGATAATGATTAGGCCTTAACAAACTAAATATTCAGTAAAGATTCTC
AACAATGCCAGTAACACATCAAAACAACAAACTACGAAGAAAATGTTAAT
ACGTAATGTTATAATGATAAGTGTGTACCACAAAATTTTAGTACCAAAAA
AACGAATAAATCACAAAAAAGCTAAATTTGTGGACCTTAAAAACAGACCT
TTTAACCCTCATCCACTTTTGAGAAGTTCAAAACTTTGAAACAAATTATC
TGAACTCTCAAAAAACTTGAATAATCATAGGTAGGGTCTATCTTAAAGTA
GAAAGTAATTAACTTAAAGATTTTCTATTAACAAGCAATATTAATGATTT
TATTACAAGCAGTGTAGTGAATCTGAACCAAATAAAGAAAGGGTTTAGAT
AATGTTTTAAATTCTTCATCGATACAAGTTTGATTAAACATAGTTGATTA
TATTTTTAGGTTCCACCTGCAGAACAGTGATTTCTCGCAATGCCAGCTAT
GATGCAACACGGCCAGCTTTAGCTATCAATAAGAATACAAAAGTTATTTG
TCAAGGATTTACTGGAAGACAGGTATTTATCTGAATGTGAATCTGTTTTA
TATAATTGTTTGTTTATCAGTGCAACATGCCTGACTCTGTCTTGTTGTTT
TAGTCAATGCACAAAACTTATGGGTAGCTAAGAAAATTCAAAAATTGAAA
ACTAGAACTAAACTCCTTTGACTATTTACAATCATTCAATTGAATGCATT
AAGGAAAGAAAAACTAAAATTCGTGATTAGGTTTTGTAAAAAAAAATATT
TAAATTATCGTTTTAGGGTACATTTCACAGCGAACAAGCTATAGCTTATG
GAACAAATATGGTCGGTGGTGTCAACCCAAAGAAAGCTGGAAGTGAACAT
ATTGGTCTCCCCGTTTTTGCTAGTGTCAGAGAGGTATTTTTGCAATTTCT
CTCCTCATTTCCTTAAAATATTGTAATTAGTTTTATTATGAAAATAAATT
TCTAGATTAATAAGGACAACATTTAATGCATCTGTCACTATTTGTTTAGA
CAGCATTTAAAAAAACCTTCATTGGATTGTGAAATTACCTTCTCTATAAC
TGTAACTTGTGATAATCTTTTTTCATAGGCAAGAGAGGCAACAAATTGCG
ACGCCACAGTCATTTATGTCCCTCCTCCTGGTGCAGCTGCAGCTATCATT
GAAGCTGTCGAAGCGGAAGTCCCTCTGATTACTTGTATCACTGAGGGTAT
CCCACAACAAGATATGGTTAAGGTAAATTGAATACATGGCGATAAATTCG
TTACATGTTATATTTGTGACTTTAACGTGGGGCGGGTTGCTGTATTTCTT
TTGTACTATAAGCAGGGGGGGGTCGGTAGTAAAATCTCAGACATATATGA
GTAGTAAAAGGATTTTTAAGAATTTTTACATACCACCACCCAGACTCTTG
GAAGAGGTATTTTACTACCCTGGTAGTAAAAGCTTTTGGGACAATTTGTC
ATGGAGACCACCTATTTTTTGGTTGCTTTTCGGACTGATTTTGCAAAAAA
AGCTAAAAAATGATTATTTCTGTGACACATTTTTTACGTAGTGCAAAAAT
TAATGTTTTTCCCTTAGAATTAAAGTCTTTTTATATTGACAAAAAATTTC
GAGAATTTTTTGTTTGCATCAAACAACTTTCCAACAGAAAATTTTTTCAA
ATTATAAAAATTTTCAGATTTTTTCAGAAAAGTCATCCAGAAAATTAAAA
GAATTACAAAAAATAGCTTAAATTTGCTAATTTTACCAGTTTTAACTACC
CAGGTAGTAAAATTTTTTCAACATTTAACACATAGATACCACCCATTTTA
GTATTTAACTACCCCGGGTAGTAAATTTTTTTTTCGATTTTTCCTCACAC
CACCACCGTAGTAAACGTCATTATGTCTGAAATTTTACTACCCCCTGCTA
TAAGGGAACTAAAGAAAACCTGGAAAAATAAAGGCTACTAGAAAAACTTC
CGGTCGAATGTCTACGTAAGGAATAAAAGAAATGGTGATAAATTTCTTTA
TTGGCAATTGTATATGTGTTTCTGTATGGAAATTCGCTTTTCAGGTTAAA
CATGTTCTGGAAAGACAAAGCAAATCTCGGTTAATTGGTCCCAACTGTCC
TGGAATCATTAAGGTAAAATAAAGTATCTTCAAAATTGAAAAGAATGTCC
AAGTGATGCAACAATTCTATTTCACCCAGTTGATTTTTTCGCAATGGAGT
TTTAAATGATACTCTAAATGGTTAAGTGACTTTTCGGGATTTCCCTATCT
TTGGTCAAAGATAGGGCTGCGCTTAAAAAATTGTTGGTTTGCCGTCACCC
GACCCTACATTTTGGAGGTGGGTCGGTCGGTCGGAATTTATTTTTATTTT
GGCGATTTATGAAATTTTCGTCCATGGAAGGGTTAACAGTTTGTTTACAT
TTAGGTAATTTTGAATAAAAAACAGAAGTGCTAGCAGGGAATTTACGATT
CTTATGCTTGAGACAAACAAGATACGAGTTTTGGCTTTTTATTGTTTCAA
GTTTTTGAAGGAAAAAAAATCTTCTTTAAAATGGCAATAAAATTTTTTGG
GTCAGGTTTCGAGGTAGGGTTTGGGTCGGGTGACGGCAAACCAACAATTT
TTTAAGTCCAGCCCAGAATGAATTATTTTAGACCAATCTACACCATCCTA
CCTCTTGGTCTATACAAAGAATTAGAAGAATATTTTTTGCAAAGGCTTCT
GTATAAAGGTTGAATTCTCAAACTTATTTTTTGGAAAAAAAGTTAAGAAT
TAAACATATTACCTAACTAAAAGCAGTTTTACTATCCATAATATCCCCTG
TATTTCATGAAGATTTAAAGAATTAAAGCTGTAAACAAGAGTAGCGAAAT
GATACAGTCCACCGCTAATATTACTCTCTTCTTTCCAATAGCCAGGAGAA
TGCAAGATTGGTATAATGCCTGGGCACATTCATCGACCTGGATCAGTTGG
TAAGTGTTGGGTAGCATTGTAAAGTACTGTAGGATGGCCAAACTTTCTCA
ATCCCGGTCAACAAAATTTTCCTATTNAAGTACTGTAGGATGGCCAAACT
TTCTCGATCCCGGGCAACAAAATTTTCCTATTATCATTTATAACGGAAAA
AAGACCAATGCTCTGATTTGATATAATAAAAAATAACTTTCAACTTTTTG
CTGGTATGCCAGTAGCGAGCACCTAACCGAACACGGGGATTTTTCTTTCC
GTTTCTTGGTGAGTTCCACTTTGATTGTTTTCGAAAAGTAGAAGCCTTTC
AAGTGTTTTGACGCAAACTGGATGATTATTACGTACGAAAAAACCCGTGA
CGTCCAGTATAGGCTAGTATTCCCAAAGAAAGAACAGCTGAAAGATTCAG
GAATGTTTCCCGGGGAATGAAAAGTTTAGCCATACTACGGTAAGAACCAG
GCTCTAGGATGACGACTTTGATATATCCAGACTGTAATATGTACATCATT
TTTAAAGGTAGCAACTATATCCATTCTAACATTTGAGATGTTAAATCTCC
AATGAGAAACATCTCTGACTTACTCTTTAACGGGAATTGTTACTAAGATG
TCCATCGCAGGCTTTGTTGAAAAGTTAAATAAGAACAAGATTTTTTTTCA
AATAGGCCTGATTGGAGCTAGGTTAATACAGAATACCTTATATCGTTAGA
AAATTCGTCAGTGAAAAAATTCGTCGGTGGAAAATATTCGCTGGTAAAAA
ATTTCGCCTCTTCCTGCCGACGAATTATCTTCAGATAAGGTACATGCAAT
CTCAATATAAGGGCAAATATATTGAGGGTATTGAAATTGAATGCAATGGC
AATTGAAATATTGAGNGTGCGCGCAATAAATTAACAAGTCCAGTAGTCCA
GGCTAAACCAGCGGCCGATTTAGAATTTTTGCCTCGCCTACCCGCACGGT
GTTTGACCTACTCTTATATTGGATTATATTGGAGAAAACGGTTGGAAAGA
AAGATGGCGGATGCAAAATGTAAACAAACGAAAATGAAAGTGAAACTGGT
TCTCGTTGGCTGTCAGCGTTAAACGTAAATTAGTACAGACAAAAAGAACT
ACTTTGCTGTAAACATTTCTTTGCTTGCTTGCTGTGGATTTTGGGGAAAC
AACAGGAGCTTGAGGTATCCAATCCTCTTGGGACTGCCCCATTATCTGAA
GTGATCCTGATTTTCAACATGTTGCAAGTATCACAGTCTTCTCTAATGCT
TGGAGGAGACAGTGAAGCTACAGCCACATGCAGCCGATGCTACAAAAAAT
GCAAGAGCATCGCTGGGTTGAAGAACCACCAAAGGGCGTGCAAAGTGATG
GTTCAACAAGCACCTCCTATTACTGAGTGGAGCCCTCCAGACCCAGACCC
ACCGGATGGATTACACAAACACCCCCCAGAAAACATCCATCTCAATTGCC
TCAATGAAGATGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGACCACAACACGAACACAAAAGCAGCTGGATATGCCGAT
GACGTTTTCGGAGGCGGTACGATTCGTGGACTCAAACGATTGTGGGATAC
CATCGTCAAGTGGGGACCGAAATACGGCTACTTTCAACAAGCTAGCAAAA
CGTGGGTAATCGTCAAACCACAATATCTTGAAGAAGCCACTGAAACCTTC
AAAGATACGAACATCAAAATCACTACCGAAGGAAAGAAACACCTCGGAGC
TGCCATCGGTTCAGAAAACTTCCGTGAAGAATTCATCACCGATAAAGTCA
ACACGTGGATCAGCGAAATCGAAACGCTCACAGAAATCGCCAAGATTGCC
CCACACGAAGCCTACACCTGCTTCACATCAGGGTACAAGCACAAGCTCAA
CTTTACCCTAAGGACAATCCCCAACATTAAACAACACCTTCAAAGGCTAG
ACGAAATCATCATAGCGCGGTTTATCCCAGCCATAACCGGTGGAATTCAG
TCAAACGAAACCGAACGTGAGCTGTTCACCTTGCCACCAAGCCTTGGTGG
TTTAGGTATACCAAAGTTCAGTGACATTTCAGATCAAGAGTTTTCCAATT
CGGAAGCGCTGACCAAACAACTCCAAAATAAGATCAAAAGCCAAGACTAT
GTCAACGACATCGACAAAGACGAGATCACGAAACTGAAATCATCATTCAA
GCGTAATCGAATGCAGAGTTACCGCCAAAAGCTCGAGCTCATCAAACAAC
AGTCGCCAAGTGAAATAACGAAGTTGATTGAAATCAACAGCGAACCAGGA
GCATCCCTTTGGTTATCAACGCTTCCAATCAAAGAAGAAGGATTTCAGTT
CGACAAAACATCCTTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAACTTA
TTTTATTTAACATATCTAATATTTGGCGTGCCGGGACTGCCTCCGTGCAA
AAATTGTGTAGTATATATTTAATATTTGGCGTGCCGGGACAGCCTCCGTG
CGATAACAAAAAAATTCTTCTTAGGCTTTAAAAAAAAAAAATTCGGCCAC
TCTTTGTTGTTTGTAGGTCTGACAGGAGAAAACATTTATATTTTCATACT
ATATATATATAAAGGCAAATTGCGGGTGTATTAGATTACTCATTTCACGT
CAAGTATTCATTTCAAAATTGACTTAAAAAAAAAACTGAACATGGTATTA
TTTTGATATTATTGTTAGCTTCCCTTTTAATTTATCCAACTTGTTTCTCT
TGAAAGGTATTGTGTCCAGATCTGGTACACTCACCTATGAAGCTGTCCAC
CAAACCACACACGTTGCTCTCGGACAAAGTCTCTGCGTCGGTAAGTTATC
ACTTTTTCTCTTAGGGGAATATTCGTTGTTTATTTGTTGTCTCTTTTTGT
TGAGCATGATATTATGAGAACAGAGTAAGAGTAACGTCAGAATTTTACCT
GGGTCTGTCACAATACTTCAACAGTGAAAGCTAAGGTTTCTAGTGGTCTT
CTTTTAGCAAAGATGGTTCATAAGTTTTGTTCGCCCGCCGTGGCTTGGGA
AAGTTAGAGAAGCGCTATATAGTCTAATTTATGATGTCTGTGAGATTATC
TTTCCTTAAGAATGGTTGATTTGGTTTTCACCTCTAAAAGAATGCATTTG
TCAAGGATTGTTCTAGAAAAAAATTTTCTTTGTAAGTTTAAACTTCGAGC
GTCTTCTTATAGATACCTATATTTAAAAGTAATATATTTTATACCTATTT
TTTTCTCATCAAGGAATTGGAGGTGATCCTTTCAACGGAACCAACTTTGT
AGACTGTTTAGATGTCTTCTTGAAAGACCCTGAAACTAAAGGTATACTTT
CTTGTGTTGACCAACCATGAGATTTCTCACGAGAGTTTTTTCGCTTAATT
CATTCAAATATTTCATAAAGATGAGTAGATTTTCGGACTGTCTCTCTTAT
CAGGTCTCCTTTTTCTTAGAAAAACTGTCCCTAAATCATTTCTCTTTGTC
AACAATATTCATTCAATGATTCACTGATCATAAATGACCAAATAAAGTCT
TGTTTTAGTCCTACACTTCAAATGATGACAATTTTTGAAAAGGTCACTTT
AGTTTAGGATAGAGATGTAGAAATCTGATTGGTATGGAGTTAGAATTGTC
TGATTGTTAGTTTTTATACTCAAGAGTACCATGTCTCCTCAATACAATAT
TGAGCGAATTGGCGGTCTATTTAAAACGAGTGCAGCAGGACCGATGTTTC
GTTTGCTAACTTTTTTTGAATTTGGAAATATTTATATCCGTCTTCTGCAC
TTTAAGCTATGATCATGATCGGCGAAATCGGAGGTGCTGCCGAAGAGCGA
GCCGCTGAATTCCTTAAACAAAATAATGTTGGTGAAAATAAGAAACCTAT
CGTTGGTTTCATCGCTGGTTTAACGGCACCACCAGGCCGACGTATGGGCC
ACGCAGGTGCCATTATTTCCGGTGGTAAAGGTGGAGCCGAAGATAAAGTA
AGGGATTCTTTCTTCCAACTTTGCTAAGCACCCTTGTTTAAACCTTGTTT
ACCAAGGTAGTACAACTTCCCTCTTACACAGCAATTCCCCGTCAATCTTT
TACCCCGAACCTATCGTTTACAAAGAGCCTATCTAATATTATAAGATAAT
GCTTGTTAGAAGGAAAACTTAGGTGTGCAAGTTTTATTCTGCAATGAATA
GAAATATTACGTTCAATTCATGCAACGTAAATACTTCAACCAACAACGTT
TCTTGTGCCAATTCGCTATCGAATACCAGCTTGTTTTGTCACCTCTTCGG
TGTCATAGATACAGAAGAATAGAAAACAATATAATTGAATCTTAGAAAGA
CGATTTTAACCTTTTTTTGTTCTTTATTTCAGATTAAAGCTTTAGAAGAT
GCAGGTGTTGTAGTTACCAGATCTCCTGCTCAACTTGGTTCTACACTTAG
ACGGGTATGTGGTATTCATTCTTTCTTATAAACTAACATAAAGACTTTTT
ACAAGGGTGTTTCNCCTATCTAATATTATAAGATAATGCTTGTTAGAAGG
AAAACTTAGGTGTGCAAGTTTTATTCTGCAATGAGTAGAAATATTACGTT
CAATTTACCGCAACGTAAATACTTCAATCAACAACGTTTCTTGTGCCAAT
TCGCTATCGAATACCAGCTTGTTTTGTCACCTCTTCGGTGTCATAGATAC
AGAAGAATAGAAAACAATATAATTGAATCTTAGAAAGACGATTTTAACCT
TTTTTGTTCTTTCTTTCAGATTAAAGCTTTAGAAGATGCAGGTGTTGTAG
TTACCAGATCTCCTGCTCAACTTGGTTCTACACTTAGACGGGTATGTGGT
ATTCATTCTTTCTTATAAACTAACATAAAGACTTTTTACAAGGTTGTCTC
CCTTCATCTATAAAGAATTTAATACCTTTTCCTTTCTTTTTCAGGTCTTT
GACGACTTCTATTTGGACTAAATTACTTTTGTTTGTAGTCTAGTTTTGTA
GATATTTTAATAAAAAAATTGTTTTAATTTTGATAAAAATGACTGTGAAA
GAGGTATCTCACAATGACCTTCTTTATCATATATTTTTGACGTTTTTTTT
CCGCGAAAAGTGAATTTTGTTGTCCCAATAAAAAACCACTGACCTAGCAA
TCGTACATATCAATTAATCTTTATTAATGTAGAAACCAAATATTCACAAA
TCGAATGTAAAATGATATATTCCAAAAAGTTCTTCTGGGAATGAGTTGAG
AAAACATCTACAATTTGTGATCGAAC

Coding sequence (CDS) from alignment at sc0000087:285498..301023-

>TCONS_00008774 ID=TCONS_00008774|Name=TCONS_00008774|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0000087:285498..301023- (Clytia hemisphaerica)
ATGGCGTCCAGTTCACTCTTCCGAAAGATCGGTTCCACCTGCAGAACAGT
GATTTCTCGCAATGCCAGCTATGATGCAACACGGCCAGCTTTAGCTATCA
ATAAGAATACAAAAGTTATTTGTCAAGGATTTACTGGAAGACAGGGTACA
TTTCACAGCGAACAAGCTATAGCTTATGGAACAAATATGGTCGGTGGTGT
CAACCCAAAGAAAGCTGGAAGTGAACATATTGGTCTCCCCGTTTTTGCTA
GTGTCAGAGAGGCAAGAGAGGCAACAAATTGCGACGCCACAGTCATTTAT
GTCCCTCCTCCTGGTGCAGCTGCAGCTATCATTGAAGCTGTCGAAGCGGA
AGTCCCTCTGATTACTTGTATCACTGAGGGTATCCCACAACAAGATATGG
TTAAGGTTAAACATGTTCTGGAAAGACAAAGCAAATCTCGGTTAATTGGT
CCCAACTGTCCTGGAATCATTAAGCCAGGAGAATGCAAGATTGGTATAAT
GCCTGGGCACATTCATCGACCTGGATCAGTTGGTATTGTGTCCAGATCTG
GTACACTCACCTATGAAGCTGTCCACCAAACCACACACGTTGCTCTCGGA
CAAAGTCTCTGCGTCGGAATTGGAGGTGATCCTTTCAACGGAACCAACTT
TGTAGACTGTTTAGATGTCTTCTTGAAAGACCCTGAAACTAAAGCTATGA
TCATGATCGGCGAAATCGGAGGTGCTGCCGAAGAGCGAGCCGCTGAATTC
CTTAAACAAAATAATGTTGGTGAAAATAAGAAACCTATCGTTGGTTTCAT
CGCTGGTTTAACGGCACCACCAGGCCGACGTATGGGCCACGCAGGTGCCA
TTATTTCCGGTGGTAAAGGTGGAGCCGAAGATAAAATTAAAGCTTTAGAA
GATGCAGGTGTTGTAGTTACCAGATCTCCTGCTCAACTTGGTTCTACACT
TAGACGGGTCTTTGACGACTTCTATTTGGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004918XLOC_004918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008774-exon-sc0000087-1575043694:300941..301023TCONS_00008774-exon-sc0000087-1575043694:300941..301023Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:296152..296264TCONS_00008774-exon-sc0000087-1575043694:296152..296264Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:295791..295907TCONS_00008774-exon-sc0000087-1575043694:295791..295907Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:295452..295595TCONS_00008774-exon-sc0000087-1575043694:295452..295595Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:294561..294629TCONS_00008774-exon-sc0000087-1575043694:294561..294629Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:293725..293782TCONS_00008774-exon-sc0000087-1575043694:293725..293782Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:287934..288017TCONS_00008774-exon-sc0000087-1575043694:287934..288017Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:287433..287510TCONS_00008774-exon-sc0000087-1575043694:287433..287510Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:286777..286967TCONS_00008774-exon-sc0000087-1575043694:286777..286967Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:286370..286391TCONS_00008774-exon-sc0000087-1575043694:286370..286391Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:285933..285982TCONS_00008774-exon-sc0000087-1575043694:285933..285982Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1575043694:285498..285829TCONS_00008774-exon-sc0000087-1575043694:285498..285829Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:300941..301023TCONS_00008774-exon-sc0000087-1510915933:300941..301023Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:296152..296264TCONS_00008774-exon-sc0000087-1510915933:296152..296264Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:295791..295907TCONS_00008774-exon-sc0000087-1510915933:295791..295907Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:295452..295595TCONS_00008774-exon-sc0000087-1510915933:295452..295595Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:294561..294629TCONS_00008774-exon-sc0000087-1510915933:294561..294629Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:293725..293782TCONS_00008774-exon-sc0000087-1510915933:293725..293782Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:287934..288017TCONS_00008774-exon-sc0000087-1510915933:287934..288017Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:287433..287510TCONS_00008774-exon-sc0000087-1510915933:287433..287510Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:286777..286967TCONS_00008774-exon-sc0000087-1510915933:286777..286967Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:286370..286391TCONS_00008774-exon-sc0000087-1510915933:286370..286391Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:285933..285982TCONS_00008774-exon-sc0000087-1510915933:285933..285982Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1510915933:285498..285829TCONS_00008774-exon-sc0000087-1510915933:285498..285829Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:300941..301023TCONS_00008774-exon-sc0000087-1491911889:300941..301023Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:296152..296264TCONS_00008774-exon-sc0000087-1491911889:296152..296264Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:295791..295907TCONS_00008774-exon-sc0000087-1491911889:295791..295907Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:295452..295595TCONS_00008774-exon-sc0000087-1491911889:295452..295595Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:294561..294629TCONS_00008774-exon-sc0000087-1491911889:294561..294629Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:293725..293782TCONS_00008774-exon-sc0000087-1491911889:293725..293782Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:287934..288017TCONS_00008774-exon-sc0000087-1491911889:287934..288017Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:287433..287510TCONS_00008774-exon-sc0000087-1491911889:287433..287510Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:286777..286967TCONS_00008774-exon-sc0000087-1491911889:286777..286967Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:286370..286391TCONS_00008774-exon-sc0000087-1491911889:286370..286391Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:285933..285982TCONS_00008774-exon-sc0000087-1491911889:285933..285982Clytia hemisphaericaexon
TCONS_00008774-exon-sc0000087-1491911889:285498..285829TCONS_00008774-exon-sc0000087-1491911889:285498..285829Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008774-proteinTCONS_00008774-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087supercontigsc0000087:285498..301023 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
142.163	148.549	182.831	159.12	20.595	8.03506	36.6679	41.2472	184.499	170.992	209.703	209.638	195.292	174.366	160.491	164.926	232.172	244.809	93.6414	115.945	231.829	248.339	122.33	127.64	34.1664	57.5344	118.746	144.868	83.7943	73.5586
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003781CoA-bd
IPR005810CoA_lig_alpha
IPR005811CoA_ligase
IPR016102Succinyl-CoA_synth-like
IPR017440Cit_synth/succinyl-CoA_lig_AS
IPR033847Citrt_syn/SCS-alpha_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0048037cofactor binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0048037 cofactor binding
Blast
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BLAST of TCONS_00008774 vs. Swiss-Prot (Human)
Match: SUCA (Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 362.073 bits (928), Expect = 1.257e-121
Identity = 219/303 (72.28%), Postives = 259/303 (85.48%), Query Frame = 2 
Query:  110 RNASYDATRPALAINKNTKVICQGFTGRQGTFHSEQAIAYGTNMVGGVNPKKAGSEHIGLPVFASVREAREATNCDATXXXXXXXXXXXXXXXXXXXXXXXXTCITEGIPQQDMVKVKHVLERQSKSRLIGPNCPGIIKPGECKIGIMPGHIHRPGSVGIVSRSGTLTYEAVHQTTHVALGQSLCVGIGGDPFNGTNFVDCLDVFLKDPETKXXXXXXXXXXXXXXRAAEFLKQNNVGENKKPIVGFIAGLTAPPGRRMXXXXXXXXXXXXXXEDKIKALEDAGVVVTRSPAQLGSTLRRVFD 1018
            R+ SY A+R  L ++KNTK+ICQGFTG+QGTFHS+QA+ YGT +VGG  P K G  H+GLPVF +V+EA+E T   A+VIYVPPP AAAAI EA+EAE+PL+ CITEGIPQQDMV+VKH L RQ K+RLIGPNCPG+I PGECKIGIMPGHIH+ G +GIVSRSGTLTYEAVHQTT V LGQSLCVGIGGDPFNGT+F+DCL++FL D  T+ +I+IGEIGG AEE AAEFLKQ+N G N KP+V FIAGLTAPPGRRMGHAGAII+GGKGGA++KI AL+ AGVVV+ SPAQLG+T+ + F+
Sbjct:   39 RHCSYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFE 341
The following BLAST results are available for this feature:
BLAST of TCONS_00008774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUCA1.257e-12172.28Succinate--CoA ligase [ADP/GDP-forming] subunit al... [more]
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