TCONS_00008900-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008900-protein
Unique Name	TCONS_00008900-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	626

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008900-protein ID=TCONS_00008900-protein|Name=TCONS_00008900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=626bp
VRCPAEKIIKTIDEIYHFKSIQVGEVQNFSCIYGQTDEAKKLERATILSR
ACAFVNGSKSVAQWEPLDISSCRRNDQEKQLLNVDLSKIDSETVGEFAKQ
ISKLTSNTSLINNKQTVQNLIKVLEKIINIQNTKIEVKENVLKILDNIIP
INDSIIPNENKNQLLSFVDKITENIQQPSFNYSGQNLAVSIQTQNRSQAT
NIKSFDNDEKIEIEFNNYDNLTVVGNISQVSSIYIPETTFTDILSDIKII
STAYKKDTFFSTTPSNKTQTGSYIMSASIKSQHIENLTDPIKLKFKIDER
KSNGTCVFWETDGNYWSTRGCTTLVNSKNEVTCECNHLTNFAILFNVYHV
DEDVLKSQEVLNYVSLVGCVLSIVGLLATVIALGCSTGQRKTRRKTGQFM
IINFCIALVLLLCVFILITNMEHFHHSSTILCHNLSAILHFTIMATFCWT
AAQAIFLYKKTVLATKNFQGDNMKSYYASLCLAWGLPMVAAAVTSRFTKS
QFDRPDNELCILKGDIFIYSTIIPITCIIFFNLIVFIMVMRKVHGHFKTR
ASFQQKEDKQIWKRAKATMICMVLLGLTWIFGFMAVGDLHAPLQWLFCIT
NTLQGVFVFVFYVLLNDEVRKAWNSR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004982	XLOC_004982	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008900	TCONS_00008900	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000832	GPCR_2_secretin-like
IPR000203	GPS
IPR017981	GPCR_2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000832	GPCR, family 2, secretin-like	PRINTS	PR00249	GPCRSECRETIN	coord: 594..615 score: 27.66 coord: 519..544 score: 21.9 coord: 434..457 score: 17.66 coord: 363..387 score: 24.2 coord: 564..584 score: 28.57
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 360..608 e-value: 6.4E-27 score: 94.3
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 302..350 e-value: 1.6E-16 score: 70.9
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 305..344 e-value: 2.4E-14 score: 53.6
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 303..350 score: 15.173
None	No IPR available	GENE3D	1.20.1070.10		coord: 345..626 e-value: 1.5E-31 score: 109.0
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 356..622
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 361..616 score: 22.498

Blast

[Close]

BLAST of TCONS_00008900-protein vs. Swiss-Prot (Human)
Match: AGRG6 (Adhesion G-protein coupled receptor G6 OS=Homo sapiens GN=ADGRG6 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 6.599e-46
Identity = 155/609 (25.45%), Postives = 293/609 (48.11%), Query Frame = 0

Query:   49 SRACAFVNGSKSVAQWEPLDISSCRRNDQEKQLLNVDLSKIDSETVGEFAKQISKLTSNTSLINNKQTVQNLIKVLEKIINIQ-NTKIEVKENVLKILDNIIPINDSIIPNENKNQLLSFVDKITENIQQPS---FNYSGQNLAVSIQTQNRSQATN-IKSF------DNDEKIEIEFNNYDNLTVVGNISQVSSIYIPETTFTDILSDIKIIS-----TAYKKDTFFSTTPSNKTQTGSYIMSASIKSQHIENLTDPIKLKFKIDERKS--NGTCVFWETDGNY----WSTRGCTTLVNS-KNEVTCECNHLTNFAILFNVYHVDEDV-LKSQEVLNYVSLVGCVLSIVGLLATVIALGCSTGQRKTRRKTGQFMIINFCIALVLLLCVFILITNMEHFHHSSTILCHNLSAILHFTIMATFCWTAAQAIFLYKKTVLATKNFQGDNMKSYYASLCL-AWGLP--MVAAAVTSR-----FTKSQFDRP-DNELCILKGDIFIYSTIIPITCIIFF-NLIVFIMVMRKVHGHFKTRASFQQKEDKQIWKRAKATMICMVLLGLTWIFGFMAVGDLHAPLQWLFCITNTLQGVFVFVFYVLLNDEVRKAW 623
            SR C +   +  V  W P+DIS+C +                     E A QI  LT++   + +   + N+++ +++I+N + N  I +   ++ I  NI+  +DS +   +   L + +D++   I   S    N + +NLA+S+ +      TN I +F      +N+   +++F +       G +  ++S+ +P     ++  +  ++      T + K   F      +    SY+M+ SI +  I+NL DP+++K K    +   +  C FW+ + N     W+T GC    +S  +E  C CNH T+F +L ++      +  ++ +VL ++S +GC +S +   AT++         K RR     +++N   AL+ L  +F+L   +  F+     LC  ++ +LHF ++ATF W   +AI +Y   V     +    ++ Y    C+  WGLP  +V+  + SR     + K  + +   +E C ++  +  Y T      ++FF N+ +FI+VM ++ G    R++   +E  ++ +  ++ +    LLG+TW F F A G L+ P  +LF I N+LQG+F+F+F+  + + V+K W
Sbjct:  557 SRICFYNATNPLVTYWGPVDISNCLKE------------------ANEVANQILNLTADGQNLTSAN-ITNIVEQVKRIVNKEENIDITLGSTLMNIFSNILSSSDSDLLESSSEALKT-IDELAFKIDLNSTSHVNITTRNLALSVSS--LLPGTNAISNFSIGLPSNNESYFQMDFES-------GQVDPLASVILPPNLLENLSPEDSVLVRRAQFTFFNKTGLFQDVGPQRKTLVSYVMACSIGNITIQNLKDPVQIKIKHTRTQEVHHPICAFWDLNKNKSFGGWNTSGCVAHRDSDASETVCLCNHFTHFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLLTY---VAFEKLRRDYPSKILMNLSTALLFLNLLFLLDGWITSFNVDG--LCIAVAVLLHFFLLATFTWMGLEAIHMYIALVKVFNTY----IRRYILKFCIIGWGLPALVVSVVLASRNNNEVYGKESYGKEKGDEFCWIQDPVIFYVTCAGYFGVMFFLNIAMFIVVMVQICGRNGKRSNRTLRE--EVLRNLRSVVSLTFLLGMTWGFAFFAWGPLNIPFMYLFSIFNSLQGLFIFIFHCAMKENVQKQW 1125

The following BLAST results are available for this feature:

BLAST of TCONS_00008900-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008900-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRG6	6.599e-46	25.45	Adhesion G-protein coupled receptor G6 OS=Homo sap...	[more]

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TCONS_00008900-protein (polypeptide) - C. hemisphaerica