TCONS_00008900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008900
Unique NameTCONS_00008900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008900 ID=TCONS_00008900|Name=TCONS_00008900|organism=Clytia hemisphaerica|type=transcript|length=2271bp
AGTACGGTGTCCCGCAGAAAAGATTATCAAAACTATAGACGAGATTTATC
ACTTCAAATCGATTCAAGTGGGTGAGGTGCAAAATTTTTCATGTATCTAT
GGTCAAACAGACGAAGCTAAAAAACTTGAAAGAGCAACAATATTGTCTCG
AGCATGTGCGTTCGTCAACGGATCAAAAAGTGTAGCACAATGGGAACCAC
TCGACATATCCTCATGCAGAAGGAACGATCAGGAAAAGCAACTTCTAAAT
GTTGATTTGAGTAAAATTGACAGTGAGACTGTTGGCGAATTTGCAAAACA
GATTAGCAAGTTGACGTCCAATACATCACTTATCAACAACAAGCAAACTG
TTCAAAATTTAAtcaaagttcttgaaaaaattattaacattcaaaacaca
aaaattgagGTCAAAGAAAACGTTTTGAAGATTCTGGACAACATCATACC
AATCAACGATTCAATTATTCcaaacgaaaacaaaaatcaacttcttagtT
TTGTTGACAAAATCACAGAAAACATTCAACAACCTTCGTTCAATTATTCC
GGACAAAATCTCGCTGTTTCGATCCAAACGCAGAACAGGTCGCAAGCAAC
AAATATAAAAAGTTTTGACAATGatgagaaaattgaaattgagtTCAATA
ATTATGACAACCTTACCGTTGTTGGCAATATTAGTCAAGTGTCTTCCATA
TATATCCCAGAAACGACTTTCACTGATATACTAAGCGACATCAAAATCAT
ATCTACTGCATAtaaaaaagacacttttttcaGTACAACGCCATCAAACA
AAACACAAACTGGCAGTTACATTATGTCAGCATCAATCAAGAGTCAGCAT
ATTGAGAATTTGACAGAtccaataaaattgaaatttaaaatcgaTGAAAG
AAAGTCAAACGGGACATGTGTTTTCTGGGAAACagACGGAAACTATTGGT
CAACTCGTGGTTGCACAACCTTAGTGAATTCGAAAAATGAGGTCACATGT
GAATGCAATCATTTGACAAATTTCGCCATTCTTTTCAATGTGTATCATGT
AGATGAAGATGTGTTGAAATCGCAAGAAGTTTTGAATTATGTTAGTCTTG
TTGGTTGTGTTCTATCCATCGTTGGATTATTGGCCACTGTTATTGCTCTT
GGTTGTTCGACTGGGCAAAGAAAAACCCGTCGTAAAACCGGTCAATTTAT
GATCATAAATTTCTGCATAGCTTTGGTTCTTCTTCTTTGTGTGTTTATAC
TCATCACCAATATGGAACACTTTCATCATTCTTCAACTATTTTATGCCAC
AACTTGTCTGCCATCTTACATTTCACGATTATGGCAACTTTCTGTTGGAC
GGCCGCCCAAGCGAtctttttgtataagaaaacTGTTCTGGCGACCAAGA
ATTTTCAAGGAGATAACATGAAAAGCTACTATGCAAGTCTCTGTCTTGCT
TGGGGCTTACCGATGGTCGCTGCTGCAGTAACGTCAAGATTTACCAAAAG
CCAATTTGACAGACCTGACAATGAACTaTGCATCTTGAAAGGtgatattt
tcatttattcGACGATCATTCCAATCACatgtatcatttttttcaacCTC
ATTGTTTTCATAATGGTCATGCGCAAAGTTCATGGTCATTTCAAAACACG
TGCTTCATTTCAACAAAAAGAAGACAAGCAGATCTGGAAAAGAGCGAAGG
CTACAATGATCTGTATGGTTCTATTAGGATTGACCTGGATTTTCGGATTC
ATGGCTGTTGGTGATTTACATGCTCCTTTACAATGGCTGTTTTGTATCAC
GAACACTTTACAaggtgtttttgtttttgttttctacGTTCTCCTCAATG
ATGAAGTGCGAAAAGCTTGGAATTCAAGATAGTCTTCTGCGTTAACGCTT
ACTTCACACAAAACCAAGAAAAAAACATCggaaaatgaattcaaaatcgG
AACATTGAGAAATCATGCAAGAACTAAACAAATGAAAGATAAATGTGAAA
CTTTTTAGGACTTtgatatacagggtgtccctaattaaagtatcgagttt
gaacatgcgattgagtagaaaagtttgtgtgtgttatcgctaaaatataa
ggaCGCTCTCCGTCACACAGgctattacaaaaggtagtgacaacgtataa
attaatcgtaatgacaaagaaaaaagagggagagcttaaaatacaatttt
gtgaacacgcacataaaactttctactcatagttgtgtttcgactcgata
ctttaattagggacaccctgt
Run BLAST on NCBI

protein sequence of TCONS_00008900-protein

>TCONS_00008900-protein ID=TCONS_00008900-protein|Name=TCONS_00008900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=626bp
VRCPAEKIIKTIDEIYHFKSIQVGEVQNFSCIYGQTDEAKKLERATILSR
ACAFVNGSKSVAQWEPLDISSCRRNDQEKQLLNVDLSKIDSETVGEFAKQ
ISKLTSNTSLINNKQTVQNLIKVLEKIINIQNTKIEVKENVLKILDNIIP
INDSIIPNENKNQLLSFVDKITENIQQPSFNYSGQNLAVSIQTQNRSQAT
NIKSFDNDEKIEIEFNNYDNLTVVGNISQVSSIYIPETTFTDILSDIKII
STAYKKDTFFSTTPSNKTQTGSYIMSASIKSQHIENLTDPIKLKFKIDER
KSNGTCVFWETDGNYWSTRGCTTLVNSKNEVTCECNHLTNFAILFNVYHV
DEDVLKSQEVLNYVSLVGCVLSIVGLLATVIALGCSTGQRKTRRKTGQFM
IINFCIALVLLLCVFILITNMEHFHHSSTILCHNLSAILHFTIMATFCWT
AAQAIFLYKKTVLATKNFQGDNMKSYYASLCLAWGLPMVAAAVTSRFTKS
QFDRPDNELCILKGDIFIYSTIIPITCIIFFNLIVFIMVMRKVHGHFKTR
ASFQQKEDKQIWKRAKATMICMVLLGLTWIFGFMAVGDLHAPLQWLFCIT
NTLQGVFVFVFYVLLNDEVRKAWNSR
Run BLAST on NCBI

transcript from alignment at sc0000088:369740..374614-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008900 ID=TCONS_00008900|Name=TCONS_00008900|organism=Clytia hemisphaerica|type=transcript|length=4875bp|location=Sequence derived from alignment at sc0000088:369740..374614- (Clytia hemisphaerica)
AGTACGGTGTCCCGCAGAAAAGATTATCAAAACTATAGACGAGATTTATC
ACTTCAAATCGATTCAAGTGGGTGAGGTGCAAAATTTTTCATGTATCTAT
GGTCAAACAGACGAAGCTAAAAAACTTGAAAGAGCAACAATATTGTCTCG
AGCATGTGCGTTCGTCAACGGATCAAAAAGTGTAGCACAATGGGAACCAC
TCGACATATCCTCATGCAGAAGGAACGATCAGGAAAAGCAACTTCTAAAT
GTTGATTTGGTGAGTTAGTTGTCCACACATATCTTTTATAAGAACATCCA
AAAAGCCTTCAGATGTGCTTAACTTTTTGAGATTCAAGCCTAAANTGTTT
GTCAACGGATCAAAAAGTGTAGCACAATGGGAACCACTCGACATATCGTC
ATGCAGAAGGAACGATCAGGAAAAGCAACTCCTAAATGTTAATTTGGTAA
GTTAGTTGTCCTCACATATTTTTTATAAGAACATCCAAAAAGCCTTCAGA
TGTGCTTAACTTTTTGAGATTCAAGCCTAAAGTCCTTTAAAATGTTCATA
TTCATATTTGTGAGTATTTTTGTTCAAATTCCTAAGAATAGACCTTTTCA
GAATTCACGGTTTACCTTTTAGAGTAAAATTGACAGTGAGACTGTTGGCG
AATTTGCAAAACAGATTAGCAAGTTGACGTCCAATACATCACTTATCAAC
AACAAGCAAACTGTTCAAAATTTAATCAAAGTTCTTGAAAAAATTATTAA
CATTCAAAACACAAAAATTGAGGTAAGGCTTTATAACAGCTCCTGCACCA
AGGTAAACATCAATTCTTGAGTTTAACCGAAAGTCTGACTTTCAGAGGCT
CCTGAAATCTAGATATTGTACACCAATCGATGCAGAATTACATATAGATT
CCAAAGAATCTTAATGAAAAGACAAACAAAGATTTCGATATAAAATGTAC
ACGTTTTTTTATATCCAAAATTTTTGAAGCCTTCTGATGTTCATGTCTTT
TGAATTTTAAGCCTAAAAATGTTCTTAACATGTTCTCATTTCCCAATTTT
TTGAGTACTTTTGTCTATTTTCCTAAGAAATCGGGTACTTCAAAGTACCC
AAAGCCTAAAAATGTTCTTAACATGTTCTCATTTTCACAATTTTTTGAGT
ACTTTTGTCTATTTTCCTAAGAAATCGGGTATTTTAGAGTATCCAAAGCC
TTAAAATGTTCTTAACTTGCTCTTAACATTTTGGCCATTGAAACCTCATG
TTCCTATGTAGTTTGTTCATAAAAAAAACGTGAAGTGCAATTTTAATTTA
GTATCTAAGGTTGTTACCATTCACTTAATATTACAGGTCAAAGAAAACGT
TTTGAAGATTCTGGACAACATCATACCAATCAACGATTCAATTATTCCAA
ACGAAAACAAAAATCAACTTCTTAGTTTTGTTGACAAAATCACAGAAAAC
ATTCAACAACCTTCGTTCAATTATTCCGGACAAAATCTCGCTGTTTCGAT
CCAAACGCAGAACAGGTCGCAAGCAACAAATATAAAAAGTTTTGACAATG
ATGAGAAAATTGAAATTGAGTTCAATAATTATGACAACCTTACCGTTGTT
GGCAATATTAGTCAAGTGTCTTCCATATATATCCCAGAAACGACTTTCAC
TGATATACTAAGCGACATCAAAATCATATCTACTGCATATAAAAAAGACA
CTTTTTTCAGTACAACGCCATCAAACAAAACACAAACTGGCAGTTACATT
ATGTCAGCATCAATCAAGAGTCAGCATATTGAGAATTTGACAGATCCAAT
AAAATTGAAATTTAAAATCGATGAAAGAAAGTCAAACGGGACATGTGTTT
TCTGGGAAACAGGTTTAAATTCTTTTTTCTTTCATTTCTTTGGCGGTTAT
TTCTTACCTGGAGCAATCCCAGCTGGCACACAACGTTGTTTCGACGTTCA
CAACGTCCATATAACGTTAGAAAAACGTTGAAACAACGTTGTGTGACAGC
TGGGATCCGGTTAATATTTCATCATGTGATATATAAACATCAAAATGAAA
TGATGAATGAATCTTTTTCTCTTTACTTCAATAGACGGAAACTATTGGTC
AACTCGTGGTTGCACAACCTTAGTGAATTCGAAAAATGAGGTCACATGTG
AATGCAATCATTTGACAAATTTCGCCATTCTTTTCAATGTGTATCATGTA
GATGAAGATGTGTTGAAATCGCAAGAAGTTTTGAATTATGTTAGTCTTGT
TGGTTGTGTTCTATCCATCGTTGGATTATTGGCCACTGTTATTGCTCTTG
GTTGTTCGACTGGGTAAGAATCTGACTGGAACAAAATAAATTAATTCTCA
CATAGAATGCCTTCTTGTAACAAAAGAAAACATTTTTAACTTAAATTCTG
GTTCGGTCAAAATTGATAGTACTAGTTTTCCCGACCCGATAAGGTTGATA
GTGAATTTATGCATTTGCACTGTTGAGAACGGTAGGGTGACTGAAGCAAT
TTGTCGTCCTCAGCTGGTCAGGATCTAGACAATTCAGCAACTAATCGTCT
CCGTCGTAGAAAAACACAGATACATAAACCAACTAATGGATGATCTTTGG
GATAACGTGTAAAAGCATGTGTGATGTAATCCCTAAAGATACGGCATAGA
CCGCTGTTAAAACTTGTGACTTAGGATAATTGCAAGGCAATTTATCTTCG
CTGCATTTAGGGGTCCCCCAGTGGTTTGCGTGAATGCGTGAATGGGCTTT
TTCACTTGCGTGAATGCCTAAAAATAAAATAAAAATTGCGTGAATACGTG
AATTGGAAAGCTTTGCGTGAACAAAAATTGCGTGAATTGCGAAAAAAACA
TTGTGTGAATTTGGGAAAAGAAATTTACGTAATTGCATGAATTGATGGTC
CGTTGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGTTCATTTATT
TTCAATATAGCGTTTGCAATCAAAACCACGCGGGTCACGCGTTTTAGTAT
GGAAAATAAATGGTTTCATCTCCCATCCAAGAGTTTTATCTAATCTAGAA
CAACCTTTAGGGTTTTCAAATCAATGGTTCAAATACCAATCTTTAATCGT
TATAGAATAGAAAGGGCTGACGTCTCTTTATTATTTTCTTATAGGCAAAG
AAAAACCCGTCGTAAAACCGGTCAATTTATGATCATAAATTTCTGCATAG
CTTTGGTTCTTCTTCTTTGTGTGTTTATACTCATCACCAATATGGAACAC
TTTCATCATTCTTCAACTATTTTATGCCACAACTTGTCTGCCATCTTACA
TTTCACGATTATGGCAACTTTCTGTTGGACGGCCGCCCAAGCGATCTTTT
TGTATAAGAAAACTGTTCTGGCGACCAAGAATTTTCAAGGAGATAACATG
AAAAGCTACTATGCAAGTCTCTGTCTTGCTTGGGGTGAGTTTCTCAACTT
TTGTTTTTGTTTTAAGCTCTATGAAAAGACAAAGCAACGCTGTCAACTTT
TGAGTAATTTTTGACACTGTCAAGATGAAATATATATCATTTATTGGGTG
GTCATCAAAGATAGTTATAACAGTTGGGACTTGTGTATTCTCTAGGCTTA
CCGATGGTCGCTGCTGCAGTAACGTCAAGATTTACCAAAAGCCAATTTGA
CAGACCTGACAATGAACTGTAAGTGGCAGGACTTTCAACAATCAATAAGG
ACTCGTAGCTAGGGGACACTCAAATAAGAGTTTCATTATCTGCAAAACTT
TCTGATTTTTTCCTTTCCCGATGGCTTGGTAATACATCTTGTTTGCCTCG
CAGTTTTGATGATGGAGCTCTATTTAGACAGTGATTCAAATTCACTGATT
CAGATTCCTCAAATTTTACAAAAAATGAACAGACTCGATCTTTTTAGTTA
TTTTTTTACCATACAACAATGGACTTGATACAGTCGTGAGTGTTGACATA
TTGTCATAAAAAGCCGAACTAAGAGACAGGGTTCTATTTTAGAAAGGACG
ACAATCAAAAAGATTTTTCAATTTTTCTTAGATGCATCTTGAAAGGTGAT
ATTTTCATTTATTCGACGATCATTCCAATCACATGTATCATTTTTTTCAA
CCTCATTGTTTTCATAATGGTCATGCGCAAAGTTCATGGTCATTTCAAAA
CACGTGCTTCATTTCAACAAAAAGAAGACAAGCAGATCTGGAAAAGAGCG
AAGGCTACAATGATCTGTATGGTTCTATTAGGATTGACCTGGATTTTCGG
ATTCATGGCTGTTGGTGATTTACATGCTCCTTTACAATGGCTGTTTTGTA
TCACGAACACTTTACAAGGTGTTTTTGTTTTTGTTTTCTACGTTCTCCTC
AATGATGAAGTGCGAAAAGCTTGGAATTCAAGATAGTCTTCTGCGTTAAC
GCTTACTTCACACAAAACCAAGAAAAAAACATCGGAAAATGAATTCAAAA
TCGGAACATTGAGAAATCATGCAAGAACTAAACAAATGAAAGATAAATGT
GAAACTTTTTAGGACTTTGATATACAGGGTGTCCCTAATTAAAGTATCGA
GTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAAAT
ATAAGGACGCTCTCCGTCACACAGGCTATTACAAAAGGTAGTGACAACGT
ATAAATTAATCGTAATGACAAAGAAAAAAGAGGGAGAGCTTAAAATACAA
TTTTGTGAACACGCACATAAAACTTTCTACTCATAGTTGTGTTTCGACTC
GATACTTTAATTAGGGACACCCTGT

Coding sequence (CDS) from alignment at sc0000088:369740..374614-

>TCONS_00008900 ID=TCONS_00008900|Name=TCONS_00008900|organism=Clytia hemisphaerica|type=CDS|length=1881bp|location=Sequence derived from alignment at sc0000088:369740..374614- (Clytia hemisphaerica)
GTACGGTGTCCCGCAGAAAAGATTATCAAAACTATAGACGAGATTTATCA
CTTCAAATCGATTCAAGTGGGTGAGGTGCAAAATTTTTCATGTATCTATG
GTCAAACAGACGAAGCTAAAAAACTTGAAAGAGCAACAATATTGTCTCGA
GCATGTGCGTTCGTCAACGGATCAAAAAGTGTAGCACAATGGGAACCACT
CGACATATCCTCATGCAGAAGGAACGATCAGGAAAAGCAACTTCTAAATG
TTGATTTGAGTAAAATTGACAGTGAGACTGTTGGCGAATTTGCAAAACAG
ATTAGCAAGTTGACGTCCAATACATCACTTATCAACAACAAGCAAACTGT
TCAAAATTTAATCAAAGTTCTTGAAAAAATTATTAACATTCAAAACACAA
AAATTGAGGTCAAAGAAAACGTTTTGAAGATTCTGGACAACATCATACCA
ATCAACGATTCAATTATTCCAAACGAAAACAAAAATCAACTTCTTAGTTT
TGTTGACAAAATCACAGAAAACATTCAACAACCTTCGTTCAATTATTCCG
GACAAAATCTCGCTGTTTCGATCCAAACGCAGAACAGGTCGCAAGCAACA
AATATAAAAAGTTTTGACAATGATGAGAAAATTGAAATTGAGTTCAATAA
TTATGACAACCTTACCGTTGTTGGCAATATTAGTCAAGTGTCTTCCATAT
ATATCCCAGAAACGACTTTCACTGATATACTAAGCGACATCAAAATCATA
TCTACTGCATATAAAAAAGACACTTTTTTCAGTACAACGCCATCAAACAA
AACACAAACTGGCAGTTACATTATGTCAGCATCAATCAAGAGTCAGCATA
TTGAGAATTTGACAGATCCAATAAAATTGAAATTTAAAATCGATGAAAGA
AAGTCAAACGGGACATGTGTTTTCTGGGAAACAGACGGAAACTATTGGTC
AACTCGTGGTTGCACAACCTTAGTGAATTCGAAAAATGAGGTCACATGTG
AATGCAATCATTTGACAAATTTCGCCATTCTTTTCAATGTGTATCATGTA
GATGAAGATGTGTTGAAATCGCAAGAAGTTTTGAATTATGTTAGTCTTGT
TGGTTGTGTTCTATCCATCGTTGGATTATTGGCCACTGTTATTGCTCTTG
GTTGTTCGACTGGGCAAAGAAAAACCCGTCGTAAAACCGGTCAATTTATG
ATCATAAATTTCTGCATAGCTTTGGTTCTTCTTCTTTGTGTGTTTATACT
CATCACCAATATGGAACACTTTCATCATTCTTCAACTATTTTATGCCACA
ACTTGTCTGCCATCTTACATTTCACGATTATGGCAACTTTCTGTTGGACG
GCCGCCCAAGCGATCTTTTTGTATAAGAAAACTGTTCTGGCGACCAAGAA
TTTTCAAGGAGATAACATGAAAAGCTACTATGCAAGTCTCTGTCTTGCTT
GGGGCTTACCGATGGTCGCTGCTGCAGTAACGTCAAGATTTACCAAAAGC
CAATTTGACAGACCTGACAATGAACTATGCATCTTGAAAGGTGATATTTT
CATTTATTCGACGATCATTCCAATCACATGTATCATTTTTTTCAACCTCA
TTGTTTTCATAATGGTCATGCGCAAAGTTCATGGTCATTTCAAAACACGT
GCTTCATTTCAACAAAAAGAAGACAAGCAGATCTGGAAAAGAGCGAAGGC
TACAATGATCTGTATGGTTCTATTAGGATTGACCTGGATTTTCGGATTCA
TGGCTGTTGGTGATTTACATGCTCCTTTACAATGGCTGTTTTGTATCACG
AACACTTTACAAGGTGTTTTTGTTTTTGTTTTCTACGTTCTCCTCAATGA
TGAAGTGCGAAAAGCTTGGAATTCAAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004982XLOC_004982Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008900-proteinTCONS_00008900-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008900-exon-sc0000088-1575043694:374356..374614TCONS_00008900-exon-sc0000088-1575043694:374356..374614Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1575043694:373843..373992TCONS_00008900-exon-sc0000088-1575043694:373843..373992Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1575043694:372753..373278TCONS_00008900-exon-sc0000088-1575043694:372753..373278Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1575043694:372302..372530TCONS_00008900-exon-sc0000088-1575043694:372302..372530Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1575043694:371081..371370TCONS_00008900-exon-sc0000088-1575043694:371081..371370Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1575043694:370847..370919TCONS_00008900-exon-sc0000088-1575043694:370847..370919Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1575043694:369740..370483TCONS_00008900-exon-sc0000088-1575043694:369740..370483Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1510915933:374356..374614TCONS_00008900-exon-sc0000088-1510915933:374356..374614Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1510915933:373843..373992TCONS_00008900-exon-sc0000088-1510915933:373843..373992Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1510915933:372753..373278TCONS_00008900-exon-sc0000088-1510915933:372753..373278Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1510915933:372302..372530TCONS_00008900-exon-sc0000088-1510915933:372302..372530Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1510915933:371081..371370TCONS_00008900-exon-sc0000088-1510915933:371081..371370Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1510915933:370847..370919TCONS_00008900-exon-sc0000088-1510915933:370847..370919Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1510915933:369740..370483TCONS_00008900-exon-sc0000088-1510915933:369740..370483Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1491911889:374356..374614TCONS_00008900-exon-sc0000088-1491911889:374356..374614Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1491911889:373843..373992TCONS_00008900-exon-sc0000088-1491911889:373843..373992Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1491911889:372753..373278TCONS_00008900-exon-sc0000088-1491911889:372753..373278Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1491911889:372302..372530TCONS_00008900-exon-sc0000088-1491911889:372302..372530Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1491911889:371081..371370TCONS_00008900-exon-sc0000088-1491911889:371081..371370Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1491911889:370847..370919TCONS_00008900-exon-sc0000088-1491911889:370847..370919Clytia hemisphaericaexon
TCONS_00008900-exon-sc0000088-1491911889:369740..370483TCONS_00008900-exon-sc0000088-1491911889:369740..370483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:369740..374614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.854232	0	0	0	0	0.157558	0.189421	0.77639	3.33081	0.335838	0.267888	0.740423	0.670064	0.870482	0.427115	0.702848	0.289445	5.53604	4.03524	0	0	0.251099	0	1.5042	1.26682	0	0	0.486287	0.495302
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR000203GPS
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
[Close]
BLAST of TCONS_00008900 vs. Swiss-Prot (Human)
Match: AGRG6 (Adhesion G-protein coupled receptor G6 OS=Homo sapiens GN=ADGRG6 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 7.471e-38
Identity = 152/612 (24.84%), Postives = 289/612 (47.22%), Query Frame = 2 
Query:  146 SRACAFVNGSKSVAQWEPLDISSCRR--NDQEKQLLNV--DLSKIDSETVGEFAKQISKLTSNTSLINNKQTVQNLIKVLEKIINIQNTKIEVKENVLKXXXXXXXXXXXXXXXXXKNQLLSFVDKITENIQQPS---FNYSGQNLAVSIQTQNRSQATN-IKSF------DNDEKIEIEFNNYDNLTVVGNISQVSSIYIPETTFTDILSDIKIIS-----TAYKKDTFFSTTPSNKTQTGSYIMSASIKSQHIENLTDPIKLKFKIDERKS--NGTCVFWETDGNY----WSTRGCTTLVNS-KNEVTCECNHLTNFAILFNVYHVDEDV-LKSQEVLNYVSLVGCVLSIVGLLATVIALGCSTGQRKTRRKTGQFMIINFCIALVLLLCVFILITNMEHFHHSSTILCHNLSAILHFTIMATFCWTAAQAIFLYKKTVLATKNFQGDNMKSYYASLCL-AWGLP--MVAAAVTSR-----FTKSQFDRP-DNELCILKGDXXXXXX-XXXXXXXXXXXXXVFIMVMRKVHGHFKTRASFQQKEDKQIWKRAKATMICMVLLGLTWIFGFMAVGDLHAPLQWLFCITNTLQGVFVFVFYVLLNDEVRKAW 1870
            SR C +   +  V  W P+DIS+C +  N+   Q+LN+  D   + S  +    +Q+ ++      +N ++ +          I + +T + +  N+L   D+ +  + S          L  +D++   I   S    N + +NLA+S+ +      TN I +F      +N+   +++F +       G +  ++S+ +P     ++  +  ++      T + K   F      +    SY+M+ SI +  I+NL DP+++K K    +   +  C FW+ + N     W+T GC    +S  +E  C CNH T+F +L ++      +  ++ +VL ++S +GC +S +   AT++         K RR     +++N   AL+ L  +F+L   +  F+     LC  ++ +LHF ++ATF W   +AI +Y   V     +    ++ Y    C+  WGLP  +V+  + SR     + K  + +   +E C ++  +  Y T       + F N+ +FI+VM ++ G    R++   +E  ++ +  ++ +    LLG+TW F F A G L+ P  +LF I N+LQG+F+F+F+  + + V+K W
Sbjct:  557 SRICFYNATNPLVTYWGPVDISNCLKEANEVANQILNLTADGQNLTSANITNIVEQVKRI------VNKEENID---------ITLGSTLMNIFSNILSSSDSDLLESSSEA--------LKTIDELAFKIDLNSTSHVNITTRNLALSVSS--LLPGTNAISNFSIGLPSNNESYFQMDFES-------GQVDPLASVILPPNLLENLSPEDSVLVRRAQFTFFNKTGLFQDVGPQRKTLVSYVMACSIGNITIQNLKDPVQIKIKHTRTQEVHHPICAFWDLNKNKSFGGWNTSGCVAHRDSDASETVCLCNHFTHFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLLTY---VAFEKLRRDYPSKILMNLSTALLFLNLLFLLDGWITSFNVDG--LCIAVAVLLHFFLLATFTWMGLEAIHMYIALVKVFNTY----IRRYILKFCIIGWGLPALVVSVVLASRNNNEVYGKESYGKEKGDEFCWIQDPVIFYVTCAGYFGVMFFLNIAMFIVVMVQICGRNGKRSNRTLRE--EVLRNLRSVVSLTFLLGMTWGFAFFAWGPLNIPFMYLFSIFNSLQGLFIFIFHCAMKENVQKQW 1125
The following BLAST results are available for this feature:
BLAST of TCONS_00008900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRG67.471e-3824.84Adhesion G-protein coupled receptor G6 OS=Homo sap... [more]
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