TCONS_00008903-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008903-protein
Unique NameTCONS_00008903-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008903-protein ID=TCONS_00008903-protein|Name=TCONS_00008903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MMQSMGQQRFGNVNNVAQPAPPTSAAGGAAPPHMANNQLSSTDRERVYQW
ILELASPDTREHALLELSKKREVVADLAPMLWHSFGTIAALLQEIVNIYP
MINPPNLTAHQSNRVCNALALLQCIASHQETRSPFLQAQIPLFLYQFLHT
TSKTRPFEYLRLTSLGVVGALVKTDDQEVITFLLSTEIIPLCLRIMESGS
ELSKTVATFILQKILLDETGLSYICQTYERFSHVALILGKMVLALSSEPS
PRLLKHVVRCYLRLSDNPRAREALRQCLPEYLKDSTFNNCLKDDTSTKRW
LAQLKKNLQEIPPPQSLADAHRMGMGN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004984XLOC_004984Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008903TCONS_00008903Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF04078Rcd1coord: 50..308
e-value: 8.8E-132
score: 438.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 106..311
e-value: 8.7E-14
score: 50.9
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 110..284
coord: 59..83

Blast
[Close]
BLAST of TCONS_00008903-protein vs. Swiss-Prot (Human)
Match: CNOT9 (CCR4-NOT transcription complex subunit 9 OS=Homo sapiens GN=CNOT9 PE=1 SV=1)

HSP 1 Score: 484.182 bits (1245), Expect = 4.042e-174
Identity = 234/272 (86.03%), Postives = 250/272 (91.91%), Query Frame = 0 
Query:   39 LSSTDRERVYQWILELASPDTREHALLELSKKREVVADLAPMLWHSFGTIAALLQEIVNIYPMINPPNLTAHQSNRVCNALALLQCIASHQETRSPFLQAQIPLFLYQFLHTTSKTRPFEYLRLTSLGVVGALVKTDDQEVITFLLSTEIIPLCLRIMESGSELSKTVATFILQKILLDETGLSYICQTYERFSHVALILGKMVLALSSEPSPRLLKHVVRCYLRLSDNPRAREALRQCLPEYLKDSTFNNCLKDDTSTKRWLAQLKKNLQE 310
            L+  DRE++YQWI EL+SP+TRE+ALLELSKKRE V DLAPMLWHSFGTIAALLQEIVNIYP INPP LTAHQSNRVCNALALLQC+ASH ETRS FL A IPLFLY FLHT SKTRPFEYLRLTSLGV+GALVKTD+QEVI FLL+TEIIPLCLRIMESGSELSKTVATFILQKILLD+TGL+YICQTYERFSHVA+ILGKMVL LS EPS RLLKHVVRCYLRLSDNPRAREALRQCLP+ LKD+TF   LKDDT+TKRWLAQL KNLQE
Sbjct:   14 LAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQE 285
The following BLAST results are available for this feature:
BLAST of TCONS_00008903-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT94.042e-17486.03CCR4-NOT transcription complex subunit 9 OS=Homo s... [more]
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