TCONS_00008947-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008947-protein
Unique NameTCONS_00008947-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length278

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008947-protein ID=TCONS_00008947-protein|Name=TCONS_00008947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MASTANSSTNNNGNDGLLIAAKLRGPGPAKYKLPGATGYKNHDGTKKKMP
AFSFGKRFTVNHESCSPGPAYIIPQFITRVGKVAAPAYSLYGRQPEKMAN
NTPSPGQYSPEKFAIPHKKKAPSYSFGGRFMGSKSDKSPAPNTYTLPSMF
GAKQVNGPSAPSYSICGRPKIGGCYEDLQKTPGPGTYAPCHPNINLAKGP
AYSIKGRHEIISEKTALPGPGAYSPEKVWINKKTGPSFSFGMRHTEYITT
VNDETEMATKRTVQHHNNRMPVVGSTSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005024XLOC_005024Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008947TCONS_00008947Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010736SHIPPO-rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010736Sperm-tail PG-rich repeatPFAMPF07004SHIPPO-rptcoord: 102..129
e-value: 9.3E-6
score: 26.2
coord: 217..244
e-value: 8.3E-8
score: 32.7
coord: 181..208
e-value: 0.05
score: 14.4
coord: 25..57
e-value: 0.68
score: 10.9
coord: 138..170
e-value: 0.59
score: 11.0

Blast
[Close]
BLAST of TCONS_00008947-protein vs. Swiss-Prot (Human)
Match: ODF3A (Outer dense fiber protein 3 OS=Homo sapiens GN=ODF3 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.489e-49
Identity = 99/238 (41.60%), Postives = 128/238 (53.78%), Query Frame = 0 
Query:   19 IAAKLRGPGPAKYKLPGATGYKNHDGTKKKMPAFSFGKRFTVNHESCSPGPAYIIPQFITRVGKVAAPAYSLYGRQPEKMANNTPSPGQYSPEKFAIPHKKKAPSYSFGGRFMGSKSDKSPAPNTYTLPSMFGAKQVNGPSAPSYSICGRPKIGGCYEDLQKTPGPGTYAPCHPNINLAKGPAYSIKGRHEIISEKTALPGPGAYSPEKVWINKKTGPSFSFGMRHTEYITTVNDETE 256
            I A    PGP KY +P  TG+  H  TK + PA+SF     +  E+CSPGP Y +   I R GK   PAYS+ GR   K    TP PG Y PEK        APS+S   R    + D +P P  Y LP + G   V   S PS+SI GR K+GG  +DL KTPGP  Y      +   K P Y++  R E   +KT  PGPGA+SPEKV + K   P  +FG++H++Y+T +  + E
Sbjct:   19 IMALYSSPGP-KYLIPPTTGFMKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYNVNPKILRTGKDLGPAYSILGRYQTK-TMLTPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLVDVE 254
The following BLAST results are available for this feature:
BLAST of TCONS_00008947-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ODF3A2.489e-4941.60Outer dense fiber protein 3 OS=Homo sapiens GN=ODF... [more]
back to top