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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008947 ID=TCONS_00008947|Name=TCONS_00008947|organism=Clytia hemisphaerica|type=transcript|length=2562bpRun BLAST on NCBI protein sequence of TCONS_00008947-protein >TCONS_00008947-protein ID=TCONS_00008947-protein|Name=TCONS_00008947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp MASTANSSTNNNGNDGLLIAAKLRGPGPAKYKLPGATGYKNHDGTKKKMPRun BLAST on NCBI transcript from alignment at sc0000089:38569..57869+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008947 ID=TCONS_00008947|Name=TCONS_00008947|organism=Clytia hemisphaerica|type=transcript|length=19301bp|location=Sequence derived from alignment at sc0000089:38569..57869+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000089:38569..57869+ >TCONS_00008947 ID=TCONS_00008947|Name=TCONS_00008947|organism=Clytia hemisphaerica|type=CDS|length=3348bp|location=Sequence derived from alignment at sc0000089:38569..57869+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00008947 vs. Swiss-Prot (Human)
Match: ODF3A (Outer dense fiber protein 3 OS=Homo sapiens GN=ODF3 PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.311e-44 Identity = 99/238 (41.60%), Postives = 128/238 (53.78%), Query Frame = 1
Query: 1618 IAAKLRGPGPAKYKLPGATGYKNHDGTKKKMPAFSFGKRFTVNHESCSPGPAYIIPQFITRVGKVAAPAYSLYGRQPEKMANNTPSPGQYSPEKFAIPHKKKAPSYSFGGRFMGSKSDKSPAPNTYTLPSMFGAKQVNGPSAPSYSICGRPKIGGCYEDLQKTPGPGTYAPCHPNINLAKGPAYSIKGRHEIISEKTALPGPGAYSPEKVWINKKTGPSFSFGMRHTEYITTVNDETE 2331
I A PGP KY +P TG+ H TK + PA+SF + E+CSPGP Y + I R GK PAYS+ GR K TP PG Y PEK APS+S R + D +P P Y LP + G V S PS+SI GR K+GG +DL KTPGP Y + K P Y++ R E +KT PGPGA+SPEKV + K P +FG++H++Y+T + + E
Sbjct: 19 IMALYSSPGP-KYLIPPTTGFMKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYNVNPKILRTGKDLGPAYSILGRYQTK-TMLTPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLVDVE 254 The following BLAST results are available for this feature:
BLAST of TCONS_00008947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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