TCONS_00009209-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009209-protein
Unique NameTCONS_00009209-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length208

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009209-protein ID=TCONS_00009209-protein|Name=TCONS_00009209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MPVDKSSATPTNYQLVLLGDHGAGKSSIFTRFKEDPFKTTFEDYSFDQTI
KEFTRNNRQMQLQLYDTAGMERAGDMTSSYFRTVDGVLLVYSCTDNETLV
NIKSRWVENCKRYCKDNTLFFVVGTKIDNCDSITVKEDYPKEMLQSLPIK
IENFYRISSKEGTNFDSFIDNVIDIILANRDVNGNDIPDGGRVDITKHCE
KKSSCGCS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005171XLOC_005171Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009209TCONS_00009209Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 154..176
score: 21.39
coord: 116..129
score: 33.91
coord: 53..75
score: 32.7
coord: 13..34
score: 38.15
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 15..179
e-value: 1.3E-6
score: -33.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 10..178
e-value: 1.4E-7
score: -3.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 13..179
e-value: 1.3E-14
score: 64.5
NoneNo IPR availableGENE3D3.40.50.300coord: 76..177
e-value: 1.1E-18
score: 66.6
NoneNo IPR availableGENE3D3.30.70.1390coord: 11..75
e-value: 3.4E-15
score: 55.3
NoneNo IPR availablePROSITEPS51419RABcoord: 4..207
score: 17.209
NoneNo IPR availableCDDcd00154Rabcoord: 15..174
e-value: 2.36248E-33
score: 117.557
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 13..172
e-value: 3.1E-20
score: 70.5
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 15..176
e-value: 1.2E-32
score: 112.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 12..182

Blast
[Close]
BLAST of TCONS_00009209-protein vs. Swiss-Prot (Human)
Match: RAB8B (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.717e-25
Identity = 64/196 (32.65%), Postives = 107/196 (54.59%), Query Frame = 0 
Query:   13 YQLVLLGDHGAGKSSIFTRFKEDPFKTTF-EDYSFDQTIKEFTRNNRQMQLQLYDTAGMERAGDMTSSYFRTVDGVLLVYSCTDNETLVNIKSRWVENCKRYCKDNTLFFVVGTKIDNCDSITVKEDYPKEMLQSLPIKIENFYRISSKEGTNF-DSFIDNVIDIILA-NRDVN-GNDIPDGGRVDITKHCEKKSS 204
            ++L+L+GD G GK+ +  RF ED F TTF      D  I+    + ++++LQ++DTAG ER   +T++Y+R   G++LVY  T+ ++  NIK+ W+ N + +   +    ++G K D  D   V ++  +++     IK   F   S+K   N  ++F     DI+   NR +N  N    GG V IT++  KK+S
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKN-WIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIK---FLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKKTS 200
The following BLAST results are available for this feature:
BLAST of TCONS_00009209-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB8B1.717e-2532.65Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
back to top