TCONS_00009302-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009302-protein
Unique NameTCONS_00009302-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009302-protein ID=TCONS_00009302-protein|Name=TCONS_00009302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=572bp
ELKRRLKAEQKAKEKAEKLAERQKTEAAKPTKPKKDAEGGAVEDEEILDP
NQYYKIRQQSVANYKKKGENPYPHKFNVDISLTEFIEKYNNVEPGTWHDD
RVSVAGRIHAKRLSGPKLIFYDLRGEGVKIQIMADQRSSEQDFGYIHGKI
RRGDIVGVKGRPGKTKKGELSIQPSEIELLSPCLHMLPHLHFGLKDKETR
FRQRYLDLILNEDVRQKFYTRSRVINYVRRFLDQMGFLEIETPMMNMIPG
GATAKPFITHHNDLNMDLYLRVAPELYHKMLVVGGIDRVYEIGRQFRNEG
IDMTHNPEFTTCEFYMAYADYNDLLRMTEEMVSGMVKSIFGTYKVKFHPD
QSETGQGEPLEVDFTPPFRRMSMLSELQKELNVTFPADLDLNTEEARKYL
DDLCVKKEVDCSAPRTTARLLDKLVGDFLEVQCVNPTFIMDHPQIMSPLA
KWHRDLPGLTERFELFVCRKEVCNAYTELNDPLVQRQMFQNQAKDKAAGD
DESMFYDEGFCTALEYGLPPTAGWGMGIDRLCMFLTDSNNIKEVLFFPAM
KPDDNAKREDGEPQSPTKKESS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005200XLOC_005200Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009302TCONS_00009302Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018149Lys-tRNA-synth_II_C
IPR034762Lys-tRNA-ligase_II_bac/euk
IPR004364aa-tRNA-synt_II
IPR004365NA-bd_OB_tRNA
IPR002313Lys-tRNA-ligase_II
IPR006195aa-tRNA-synth_II
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006430lysyl-tRNA aminoacylation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004824lysine-tRNA ligase activity
GO:0005524ATP binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006430 lysyl-tRNA aminoacylation
biological_process GO:0006418 tRNA aminoacylation for protein translation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004824 lysine-tRNA ligase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..26
NoneNo IPR availableGENE3D2.40.50.140coord: 50..189
e-value: 1.2E-39
score: 134.9
NoneNo IPR availableGENE3D3.30.930.10coord: 190..550
e-value: 4.2E-100
score: 334.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 552..572
NoneNo IPR availableCDDcd04322LysRS_Ncoord: 101..208
e-value: 2.19005E-51
score: 171.891
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 196..551
IPR018149Lysyl-tRNA synthetase, class II, C-terminalPRINTSPR00982TRNASYNTHLYScoord: 296..313
score: 77.57
coord: 233..243
score: 61.28
coord: 278..291
score: 62.96
coord: 435..451
score: 59.48
coord: 249..265
score: 67.76
IPR018149Lysyl-tRNA synthetase, class II, C-terminalCDDcd00775LysRS_corecoord: 211..552
e-value: 0.0
score: 592.637
IPR034762Bacterial/eukaryotic lysine-tRNA ligase, class IIPIRSFPIRSF039101LysRS2coord: 1..566
e-value: 8.9E-263
score: 870.8
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)PFAMPF00152tRNA-synt_2coord: 196..550
e-value: 8.1E-81
score: 271.4
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typePFAMPF01336tRNA_anti-codoncoord: 102..180
e-value: 1.5E-14
score: 53.6
IPR002313Lysine-tRNA ligase, class IITIGRFAMTIGR00499TIGR00499coord: 50..553
e-value: 7.3E-190
score: 629.7
IPR002313Lysine-tRNA ligase, class IIHAMAPMF_00252Lys_tRNA_synth_class2coord: 56..557
score: 37.488
IPR006195Aminoacyl-tRNA synthetase, class IIPROSITEPS50862AA_TRNA_LIGASE_IIcoord: 221..552
score: 26.304
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 48..188

Blast
[Close]
BLAST of TCONS_00009302-protein vs. Swiss-Prot (Human)
Match: SYK (Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 826.239 bits (2133), Expect = 0.000e+0
Identity = 396/560 (70.71%), Postives = 466/560 (83.21%), Query Frame = 0 
Query:    1 ELKRRLKAEQKAKEKAEK---LAERQKTEAAKPTKPKKDAEGGAVEDEEILDPNQYYKIRQQSVANYKKKGENPYPHKFNVDISLTEFIEKYNNVEPGT-WHDDRVSVAGRIHAKRLSGPKLIFYDLRGEGVKIQIMADQRS--SEQDFGYIHGKIRRGDIVGVKGRPGKTKKGELSIQPSEIELLSPCLHMLPHLHFGLKDKETRFRQRYLDLILNEDVRQKFYTRSRVINYVRRFLDQMGFLEIETPMMNMIPGGATAKPFITHHNDLNMDLYLRVAPELYHKMLVVGGIDRVYEIGRQFRNEGIDMTHNPEFTTCEFYMAYADYNDLLRMTEEMVSGMVKSIFGTYKVKFHPDQSETGQGEPLEVDFTPPFRRMSMLSELQKELNVTFPADLDLNTEEARKYLDDLCVKKEVDCSAPRTTARLLDKLVGDFLEVQCVNPTFIMDHPQIMSPLAKWHRDLPGLTERFELFVCRKEVCNAYTELNDPLVQRQMFQNQAKDKAAGDDESMFYDEGFCTALEYGLPPTAGWGMGIDRLCMFLTDSNNIKEVLFFPAMKPDD 554
            ELKRRLKAE+K  EK  K   L+E+Q ++A          + G   +EE +DPNQYYKIR Q++   K  GE+PYPHKF+VDISLT+FI+KY++++PG    D  + VAGRIHAKR SG KLIFYDLRGEGVK+Q+MA+ R+  SE++F +I+ K+RRGDI+GV+G PGKTKKGELSI P EI LLSPCLHMLPHLHFGLKDKETR+RQRYLDLILN+ VRQKF  RS++I Y+R FLD++GFLEIETPMMN+IPGGA AKPFIT+HN+L+M+LY+R+APELYHKMLVVGGIDRVYEIGRQFRNEGID+THNPEFTTCEFYMAYADY+DL+ +TE+MVSGMVK I G+YKV +HPD  E   G+  +VDFTPPFRR++M+ EL+K L +  P      TEE RK LDD+CV K V+C  PRTTARLLDKLVG+FLEV C+NPTFI DHPQIMSPLAKWHR   GLTERFELFV +KE+CNAYTELNDP+ QRQ+F+ QAK KAAGDDE+MF DE FCTALEYGLPPTAGWGMGIDR+ MFLTDSNNIKEVL FPAMKP+D
Sbjct:   22 ELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAAT-NHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPE---GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPED 577
The following BLAST results are available for this feature:
BLAST of TCONS_00009302-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYK0.000e+070.71Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 S... [more]
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