|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009302 ID=TCONS_00009302|Name=TCONS_00009302|organism=Clytia hemisphaerica|type=transcript|length=2344bpRun BLAST on NCBI protein sequence of TCONS_00009302-protein >TCONS_00009302-protein ID=TCONS_00009302-protein|Name=TCONS_00009302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=572bp ELKRRLKAEQKAKEKAEKLAERQKTEAAKPTKPKKDAEGGAVEDEEILDPRun BLAST on NCBI transcript from alignment at sc0000091:648242..661025- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009302 ID=TCONS_00009302|Name=TCONS_00009302|organism=Clytia hemisphaerica|type=transcript|length=12784bp|location=Sequence derived from alignment at sc0000091:648242..661025- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:648242..661025- >TCONS_00009302 ID=TCONS_00009302|Name=TCONS_00009302|organism=Clytia hemisphaerica|type=CDS|length=25785bp|location=Sequence derived from alignment at sc0000091:648242..661025- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009302 vs. Swiss-Prot (Human)
Match: SYK (Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3) HSP 1 Score: 805.823 bits (2080), Expect = 0.000e+0 Identity = 379/518 (73.17%), Postives = 443/518 (85.52%), Query Frame = 2
Query: 119 GAVEDEEILDPNQYYKIRQQSVANYKKKGENPYPHKFNVDISLTEFIEKYNNVEPGT-WHDDRVSVAGRIHAKRLSGPKLIFYDLRGEGVKIQIMADQRS--SEQDFGYIHGKIRRGDIVGVKGRPGKTKKGELSIQPSEIELLSPCLHMLPHLHFGLKDKETRFRQRYLDLILNEDVRQKFYTRSRVINYVRRFLDQMGFLEIETPMMNMIPGGATAKPFITHHNDLNMDLYLRVAPELYHKMLVVGGIDRVYEIGRQFRNEGIDMTHNPEFTTCEFYMAYADYNDLLRMTEEMVSGMVKSIFGTYKVKFHPDQSETGQGEPLEVDFTPPFRRMSMLSELQKELNVTFPADLDLNTEEARKYLDDLCVKKEVDCSAPRTTARLLDKLVGDFLEVQCVNPTFIMDHPQIMSPLAKWHRDLPGLTERFELFVCRKEVCNAYTELNDPLVQRQMFQNQAKDKAAGDDESMFYDEGFCTALEYGLPPTAGWGMGIDRLCMFLTDSNNIKEVLFFPAMKPDD 1663
G +EE +DPNQYYKIR Q++ K GE+PYPHKF+VDISLT+FI+KY++++PG D + VAGRIHAKR SG KLIFYDLRGEGVK+Q+MA+ R+ SE++F +I+ K+RRGDI+GV+G PGKTKKGELSI P EI LLSPCLHMLPHLHFGLKDKETR+RQRYLDLILN+ VRQKF RS++I Y+R FLD++GFLEIETPMMN+IPGGA AKPFIT+HN+L+M+LY+R+APELYHKMLVVGGIDRVYEIGRQFRNEGID+THNPEFTTCEFYMAYADY+DL+ +TE+MVSGMVK I G+YKV +HPD E G+ +VDFTPPFRR++M+ EL+K L + P TEE RK LDD+CV K V+C PRTTARLLDKLVG+FLEV C+NPTFI DHPQIMSPLAKWHR GLTERFELFV +KE+CNAYTELNDP+ QRQ+F+ QAK KAAGDDE+MF DE FCTALEYGLPPTAGWGMGIDR+ MFLTDSNNIKEVL FPAMKP+D
Sbjct: 63 GVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPE---GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPED 577 The following BLAST results are available for this feature:
BLAST of TCONS_00009302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.