TCONS_00009994-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009994-protein
Unique NameTCONS_00009994-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009994-protein ID=TCONS_00009994-protein|Name=TCONS_00009994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MLPLWNSDMYTFGAMTMTNLIGYWLINKAMKRARIWRYVVDGEVLTNRDQ
WMVCNIICSLIHSIVSAVWTTTCFLATPSLVEDLINKTSWWSSALIAASG
GYFMYDTYDILLNDGFRQKPVLIHHVLILHAFPFALMTSSYHGFALSALL
MEYSSIFLHLRRLMKYANKKPTIFGLPRIFVEMFVKVFLVLTMLVFRHLL
SLFLIRHMWQNRNTITGIPFWIGITSSVVFIPVNIGLSYRVYKTKDLEKG
RRRTIVSP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005607XLOC_005607Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009994TCONS_00009994Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006634TRAM/LAG1/CLN8 homology domainSMARTSM00724lag1_27coord: 48..249
e-value: 1.3E-16
score: 71.2
IPR006634TRAM/LAG1/CLN8 homology domainPFAMPF03798TRAM_LAG1_CLN8coord: 55..221
e-value: 1.7E-18
score: 67.0
IPR006634TRAM/LAG1/CLN8 homology domainPROSITEPS50922TLCcoord: 48..242
score: 22.349

Blast
[Close]
BLAST of TCONS_00009994-protein vs. Swiss-Prot (Human)
Match: TLCD1 (Calfacilitin OS=Homo sapiens GN=TLCD1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.634e-16
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 0 
Query:   51 WMVCNIICSLIHSIVSAVWTTTCFLATPSLVEDLINKTSWWSSA--LIAASGGYFMYDTYDILLNDGFRQK-PVLIHHVLILHAFPFALMTSSYHGFALSALLMEYSSIFLHLRRLMKYANKK 170
            W   N++ S  HSIVS +W   C   TP ++ ++  +T+W  S   L+  S GYF++DT DI+ +   R     L+HHV+ + AF   +  SS+ G  +  LL+E S+IFL +R +MK +N +
Sbjct:   43 WRWHNLLVSFAHSIVSGIWALLCVWQTPDMLVEI--ETAWSLSGYLLVCFSAGYFIHDTVDIVASGQTRASWEYLVHHVMAMGAFFSGIFWSSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQ 163
The following BLAST results are available for this feature:
BLAST of TCONS_00009994-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLCD17.634e-1636.59Calfacilitin OS=Homo sapiens GN=TLCD1 PE=2 SV=1[more]
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