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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009994 ID=TCONS_00009994|Name=TCONS_00009994|organism=Clytia hemisphaerica|type=transcript|length=1094bp
ataaaataaaatgaagataAGATAAAAGACGATAAAAATATGCTACCATT
ATGGAATTCAGATATGTATACTTTTGGTGCCATGACAATgacgaatctga
ttggttattGGTTGATCAACAAAGCAATGAAAAGAGCTCGAATATGGAGA
TATGTTGTTGATGGTGAGGTTTTGACTAATCGAGATCAATGGATGGTGTG
TAATATCATTTGCTCGCTTATCCATTCAATTGTGTCTGCAGTTTGGACGA
CCACTTGttttttagcTACTCCATCGTTGGTTGAAGATTTGATTAACAAG
ACATCGTGGTGGAGTTCTGCTCTTATTGCAGCTTCAGGAGGTTATTTCAT
GTACGACACATACGATATCCTATTGAATGACGGTTTCCGACAAAAGCCAG
TGCTGATTCATCATGTTTTAATCTTGCATGCATTTCCATTtgctttgatg
acgtcatcgtacCATGGTTTTGCATTGTCAGCTCTTTTGATGGAATACAG
TTCAATTTTCCTTCACTTGCGACGTCTTATGAAATACGCTAACAAAAAAC
CGACTATTTTCGGATTGCCGAGAATTTTCGTTGAAATGTTCGTGAAAGTC
TTTCTCGTTTTAACAATGCTCGTATTCCGACATTTGCTATCGTTGTTTTT
AATACGTCATATGTGGCAAAATCGCAACACCATTACTGGGATACCATTTT
GGATTGGCATTACGTCATCAGTTGTTTTTATCCCAGTGAATATCGGATTA
TCTTATCGGGTTTATAAAACCAAAGACTTAGAGAAAGGAAGACGTCGCAC
CATTGTTTCACCTTAGTTATACGGCACAGATATAGATTTTTTTTACTGGA
TTGTCCCGTGTTGAAAAATGCTGAGTCAGCAGAAAAAACtagattaaaat
atttttttagcgaTGAAAGATTTTTCAGAGAAAAGTACAAGCAAATTTCT
TGGAAATACAAGcatttgataacttttgactgcTGTTTGCTTCAAGGATG
GCGGAACCTGGGTATTTTAATGATGACCTTGATGAAGTACTGATAAGTTT
CATTCCTGATGAACTAGTCAAGTCAATAAAGAATGGCACTGATC Run BLAST on NCBI protein sequence of TCONS_00009994-protein >TCONS_00009994-protein ID=TCONS_00009994-protein|Name=TCONS_00009994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MLPLWNSDMYTFGAMTMTNLIGYWLINKAMKRARIWRYVVDGEVLTNRDQ
WMVCNIICSLIHSIVSAVWTTTCFLATPSLVEDLINKTSWWSSALIAASG
GYFMYDTYDILLNDGFRQKPVLIHHVLILHAFPFALMTSSYHGFALSALL
MEYSSIFLHLRRLMKYANKKPTIFGLPRIFVEMFVKVFLVLTMLVFRHLL
SLFLIRHMWQNRNTITGIPFWIGITSSVVFIPVNIGLSYRVYKTKDLEKG
RRRTIVSP Run BLAST on NCBI transcript from alignment at sc0000101:474656..478785+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009994 ID=TCONS_00009994|Name=TCONS_00009994|organism=Clytia hemisphaerica|type=transcript|length=4130bp|location=Sequence derived from alignment at sc0000101:474656..478785+ (Clytia hemisphaerica)
ataaaataaaatgaagataAGATAAAAGACGATAAAAATATGCTACCATT
ATGGAATTCAGATATGTATACTTTTGGTGCCATGACAATgacgaatctga
ttggttattGGTTGATCAACAAAGCAATGAAAAGAGCTCGAATATGGAGA
TATGTTGTTGATGGTGAGGTTTTGACTAATCGAGATCAATGGATGGTGTG
TAATATCATTTGCTCGCTTATCCATTCAATTGTGTCTGCAGTTTGGACGA
CCACTTGGTGagctattttttttcttctaaaaattCCTGATGTGTTAAGA
ATATTTCCTTCAGGTCAAAACTTTTAGGATGCCATTGAAATTGCTAGTAA
AATGCTAATAACAttgttaaaagttcttccgtcttaGACGGTTTCCGTCA
CAGCGTCGATTATATAATTGAATAGACGTTCTCAAGTCTATAAAGAGcct
tttccgtctcaaaattcgGCACAATTCACCAAAATCTCAAGACTACGTGC
TAATTTGATGTGTAAAATTCATTTTCAGACGAAAgaccttgctttgacca
ctgtttAAATTGCTAGAATAAATGCTAATAAGGATTATTAAAGTATCCCG
ACGATTTAACTACCATTATGACCGAAATACAAAAGTACTTCTATCCCCCA
AATCGTGAAGTTTCTTGTAgaatagactggagtcgttcataatgcgtgta
atacagtagtataggcgttctATGATAATACGAATATTGTTATATGTGAT
TCAGCTTGTATAAATATTTCATTAACAATAGCAAACCAATATAAATATGC
AACTTTTGGCTTGCTCataggtttctagacgactaaaatttgttccctct
TTTACtctttgctttatttctaccgggtgtcccagaaaaaagttctgctc
tttgaagtgaattttctcgagttttatgaatttttaaaagatcaatcctt
ttgcattggaaagaggaaagataaacttcaattttgagggtcatttatca
aatttggtcaactagatcaaaaattatgctgaaatgaataaaattttcac
attttggaaaggctcaaaaacgttgaaaatcgacctatcaaattttataa
cctaattattacttttttgcaggaataaaaagtttaaagtggacatgaaa
acaaaaaatgcttgaaataaTTCTCTAAAGGactaaaaaatttcatttga
gtcatttcaaattattttctatgGAATTCAGCTTCAAGTTTTGGCTTAAG
GACCCCTAAAGTCAAAAGTAGGGCTGATTTTATCAGTGTAGCTATTGAAG
TCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTTAAA
ATCTTACTtcgtttttcataaaaagataCTTCCATTAGGTTTTTATTGCT
TCAACAATGAAAATCATGATCCATGCAATTATGCTTCTATAAGAATTTGA
TAGGTCgcttttcaacgtttttgagcaattacaaacaaaagaatttttta
ttcattttggcTTAATTTTTGATCCAGTTGACTAAATttgacaaatgacc
cctcaaaatttaattttatccttcctctttccatagtataagaaagccgc
ggctggaatatgtaccgcattgtcttttcagttaattgctgttccatctc
tgtctccgagctttataagaacatcaagattgtTAGTTTATTATTGGtgg
atagtttttgaaatttttctcttattttccttcacaagaagattttttgt
ttctagatatctttgaatctgtacccaatgaAACACTTTAACTGATtgtg
gacatattttagggggattttgtggaaacgatagtttttcgccaaaatta
aaattataagaactatatttaagataacaactttcctgtcagtttgaatg
ataaattttgaaggtgctggcttgaaattttcacagaattatcTTAATGT
ACTATCTCATTGATTTCTAGAAAggtttcactgaaatattgtgaaggcat
ttcgaggcaccttattaatttttgagttctttcagcctagccatttgtgc
ttgtttaaatttcttattgttaatctttcctgcacaatgatattataatg
caagtgtattatcaagggcatatcattgatgtctaaaacgcactgcgaag
taagtattaacgacaaactaataaagtttaccattaaagatgctacacta
cttatttcttgatcaacaaatagtcatcaaatacgacagagatagaacag
tagaaattcagatgttatcattccagccgcggctttcttatactatgctc
tttccaatgcaaaaggattgattgtttagaaattcataaaactggagaaa
attcacttcaaagagcggaacttttttctgggacacccggtactATGTTT
GAATTAGTCGTCAAGTTTCTTCTTGTAGAGAAAAGATTTAACCATGATTT
AACTCttatacagacattctcagcaATTTGatttgtgtgttttttattca
gttttttagcTACTCCATCGTTGGTTGAAGATTTGATTAACAAGACATCG
TGGTGGAGTTCTGCTCTTATTGCAGCTTCAGGAGGTCTGTAGTGTGTATC
ACTATTGACACTCTAATTCGACCTTCTTCTATTTGATACACTCCAttgtt
cgatgaaatttaagtccccgtcaacaagaaaaattcataaacgacgctct
actatcgatacgctcccttattcgatgaaaatccaattctccttggaaat
cgaattagaaagcgtcCCATTCTTCATGGTGATAAAATGTAGCTGTTGTT
TTGTAAGCCAAGGGTTTGAACTTTAGTTCTAGTAAAGGACTTTAGGACTA
GTCACTTGGTTTGCGAAAGCTGTGGAACATTTTTCGTATTGGCTTTGCAg
caattaatttttcgaatttttgtgtGTCACACTTTGTTTGCAgcgaaaag
aaaagaagaaagcaAGAGTCTTGAGAATCCTAGAGAATCTGGGAATCTTA
AACATACTTATTCCCATTTCTCATAGGTTATTTCATGTACGACACATACG
ATATCCTATTGAATGACGGTTTCCGACAAAAGCCAGTGCTGATTCATCAT
GTTTTAGTGAGTTGTTCTACCTTCCCGAAACGCTCTCTTTTTCAGCGAAT
TTGTGGTGTTTTGACCAGAGAGTGTTAGATTTGccgagaaatttttttga
aaatgttcgtCAAGATCAAGGAAACTTCCTTTGTCCTTGAAAATTGTTAT
TCTATTAAACTTTCTCTGATTTtctattgatttttgaaaatttctctttt
atttAGATCTTGCATGCATTTCCATTtgctttgatgacgtcatcgtacCA
TGGTTTTGCATTGTCAGCTCTTTTGATGGAATACAGTTCAATTTTCCTTC
ACTTGCGACGTCTTATGAAATACGCTAACAAAAAACCGACTATTTTCGGA
TTGCCGAGAATTTTCGTTGAAATGTTCGTGAAAGTCTTTCTCGTTTTAAC
AATGCTCGTATTCCGACATTTGCTATCGTTGTTTTTAATACGTCATATGT
GGCAAAATCGCAACACCATTACTGGGATACCATTTTGGATTGGCATTACG
TCATCAGTTGTTTTTATCCCAGTGAATATCGGATTATCTTATCGGGTTTA
TAAAACCAAAGACTTAGAGAAAGGAAGACGTCGCACCATTGTTTCACCTT
AGTTATACGGCACAGATATAGATTTTTTTTACTGGATTGTCCCGTGTTGA
AAAATGCTGAGTCAGCAGAAAAAACtagattaaaatatttttttagcgaT
GAAAGATTTTTCAGAGAAAAGTACAAGCAAATTTCTTGGAAATACAAGca
tttgataacttttgactgcTGTTTGCTTCAAGGATGGCGGAACCTGGGTA
TTTTAATGATGACCTTGATGAAGTACTGATAAGTTTCATTCCTGATGAAC
TAGTCAAGTCAATAAAGAATGGCACTGATC Coding sequence (CDS) from alignment at sc0000101:474656..478785+ >TCONS_00009994 ID=TCONS_00009994|Name=TCONS_00009994|organism=Clytia hemisphaerica|type=CDS|length=3108bp|location=Sequence derived from alignment at sc0000101:474656..478785+ (Clytia hemisphaerica)
ATGCTACCATTATGGAATTCAGATATGTATACTTTTGGTGCCATGACAAT
gacgaatctgattggttattGGTTGATCAACAAAGCAATGAAAAGAGCTC
GAATATGGAGATATGTTGTTGATGGTGAGGTTTTGACTAATCGAGATCAA
TGGATGGTGTGTAATATCATTTGCTCGCTTATCCATTCAATTGTGTCTGC
AGTTTGGACGACCACTTGttttttagcTACTCCATCGTTGGTTGAAGATT
TGATTAACAAGACATCGTGGTGGAGTTCTGCTCTTATTGCAGCTTCAGGA
GGTTATTTCATGTACGACACATACGATATCCTATTGAATGACGGTTTCCG
ACAAAAGCCAGTGCTGATTCATCATGTTTTAATCTTGCATGCATTTCCAT
TtgctttgatgacgtcatcgtacCATGGTTTTGCATTGTCAGCTCTTTTG
ATGGAATACAGTTCAATTTTCCTTCACTTGCGACGTCTTATGAAATACGC
TAACAAAAAACCGACTATTTTCGGATTGCCGAGAATTTTCGTTGAAATGT
TCGTGAAAGTCTTTCTCGTTTTAACAATGCTCGTATTCCGACATTTGCTA
TCGTTGTTTTTAATACGTCATATGTGGCAAAATCGCAACACCATTACTGG
GATACCATTTTGGATTGGCATTACGTCATCAGTTGTTTTTATCCCAGTGA
ATATCGGATTATCTTATCGGGTTTATAAAACCAAAGACTTAGAGAAAGGA
AGACGTCGCACCATTGTTTCACCTTAGATGCTACCATTATGGAATTCAGA
TATGTATACTTTTGGTGCCATGACAATgacgaatctgattggttattGGT
TGATCAACAAAGCAATGAAAAGAGCTCGAATATGGAGATATGTTGTTGAT
GGTGAGGTTTTGACTAATCGAGATCAATGGATGGTGTGTAATATCATTTG
CTCGCTTATCCATTCAATTGTGTCTGCAGTTTGGACGACCACTTGttttt
tagcTACTCCATCGTTGGTTGAAGATTTGATTAACAAGACATCGTGGTGG
AGTTCTGCTCTTATTGCAGCTTCAGGAGGTTATTTCATGTACGACACATA
CGATATCCTATTGAATGACGGTTTCCGACAAAAGCCAGTGCTGATTCATC
ATGTTTTAATCTTGCATGCATTTCCATTtgctttgatgacgtcatcgtac
CATGGTTTTGCATTGTCAGCTCTTTTGATGGAATACAGTTCAATTTTCCT
TCACTTGCGACGTCTTATGAAATACGCTAACAAAAAACCGACTATTTTCG
GATTGCCGAGAATTTTCGTTGAAATGTTCGTGAAAGTCTTTCTCGTTTTA
ACAATGCTCGTATTCCGACATTTGCTATCGTTGTTTTTAATACGTCATAT
GTGGCAAAATCGCAACACCATTACTGGGATACCATTTTGGATTGGCATTA
CGTCATCAGTTGTTTTTATCCCAGTGAATATCGGATTATCTTATCGGGTT
TATAAAACCAAAGACTTAGAGAAAGGAAGACGTCGCACCATTGTTTCACC
TTAGATGCTACCATTATGGAATTCAGATATGTATACTTTTGGTGCCATGA
CAATgacgaatctgattggttattGGTTGATCAACAAAGCAATGAAAAGA
GCTCGAATATGGAGATATGTTGTTGATGGTGAGGTTTTGACTAATCGAGA
TCAATGGATGGTGTGTAATATCATTTGCTCGCTTATCCATTCAATTGTGT
CTGCAGTTTGGACGACCACTTGttttttagcTACTCCATCGTTGGTTGAA
GATTTGATTAACAAGACATCGTGGTGGAGTTCTGCTCTTATTGCAGCTTC
AGGAGGTTATTTCATGTACGACACATACGATATCCTATTGAATGACGGTT
TCCGACAAAAGCCAGTGCTGATTCATCATGTTTTAATCTTGCATGCATTT
CCATTtgctttgatgacgtcatcgtacCATGGTTTTGCATTGTCAGCTCT
TTTGATGGAATACAGTTCAATTTTCCTTCACTTGCGACGTCTTATGAAAT
ACGCTAACAAAAAACCGACTATTTTCGGATTGCCGAGAATTTTCGTTGAA
ATGTTCGTGAAAGTCTTTCTCGTTTTAACAATGCTCGTATTCCGACATTT
GCTATCGTTGTTTTTAATACGTCATATGTGGCAAAATCGCAACACCATTA
CTGGGATACCATTTTGGATTGGCATTACGTCATCAGTTGTTTTTATCCCA
GTGAATATCGGATTATCTTATCGGGTTTATAAAACCAAAGACTTAGAGAA
AGGAAGACGTCGCACCATTGTTTCACCTTAGATGCTACCATTATGGAATT
CAGATATGTATACTTTTGGTGCCATGACAATgacgaatctgattggttat
tGGTTGATCAACAAAGCAATGAAAAGAGCTCGAATATGGAGATATGTTGT
TGATGGTGAGGTTTTGACTAATCGAGATCAATGGATGGTGTGTAATATCA
TTTGCTCGCTTATCCATTCAATTGTGTCTGCAGTTTGGACGACCACTTGt
tttttagcTACTCCATCGTTGGTTGAAGATTTGATTAACAAGACATCGTG
GTGGAGTTCTGCTCTTATTGCAGCTTCAGGAGGTTATTTCATGTACGACA
CATACGATATCCTATTGAATGACGGTTTCCGACAAAAGCCAGTGCTGATT
CATCATGTTTTAATCTTGCATGCATTTCCATTtgctttgatgacgtcatc
gtacCATGGTTTTGCATTGTCAGCTCTTTTGATGGAATACAGTTCAATTT
TCCTTCACTTGCGACGTCTTATGAAATACGCTAACAAAAAACCGACTATT
TTCGGATTGCCGAGAATTTTCGTTGAAATGTTCGTGAAAGTCTTTCTCGT
TTTAACAATGCTCGTATTCCGACATTTGCTATCGTTGTTTTTAATACGTC
ATATGTGGCAAAATCGCAACACCATTACTGGGATACCATTTTGGATTGGC
ATTACGTCATCAGTTGTTTTTATCCCAGTGAATATCGGATTATCTTATCG
GGTTTATAAAACCAAAGACTTAGAGAAAGGAAGACGTCGCACCATTGTTT
CACCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009994-exon-sc0000101-1491911889:474656..474912 | TCONS_00009994-exon-sc0000101-1491911889:474656..474912 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1510915933:474656..474912 | TCONS_00009994-exon-sc0000101-1510915933:474656..474912 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1575043694:474656..474912 | TCONS_00009994-exon-sc0000101-1575043694:474656..474912 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1491911889:477307..477389 | TCONS_00009994-exon-sc0000101-1491911889:477307..477389 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1510915933:477307..477389 | TCONS_00009994-exon-sc0000101-1510915933:477307..477389 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1575043694:477307..477389 | TCONS_00009994-exon-sc0000101-1575043694:477307..477389 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1491911889:477832..477911 | TCONS_00009994-exon-sc0000101-1491911889:477832..477911 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1510915933:477832..477911 | TCONS_00009994-exon-sc0000101-1510915933:477832..477911 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1575043694:477832..477911 | TCONS_00009994-exon-sc0000101-1575043694:477832..477911 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1491911889:478112..478785 | TCONS_00009994-exon-sc0000101-1491911889:478112..478785 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1510915933:478112..478785 | TCONS_00009994-exon-sc0000101-1510915933:478112..478785 | Clytia hemisphaerica | exon |
| TCONS_00009994-exon-sc0000101-1575043694:478112..478785 | TCONS_00009994-exon-sc0000101-1575043694:478112..478785 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:474656..478785 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006634 | TLC-dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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