TCONS_00009997-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009997-protein
Unique NameTCONS_00009997-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009997-protein ID=TCONS_00009997-protein|Name=TCONS_00009997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
RDILLFFERTKKYKNAMSLSQLSPELVEKAKVELNEDPDTRMNFIQELRE
KSKTRQDLRIEQADKDLIKFLRARKFDLDRAFDLMVTYYESKRDMSDLFT
NYSPSGEIKAFESGFSIGFKDRDQEGRKIFAFRPGMWEPSERTLLDNLRA
NLIAIEMLLEEEETQICGIVIIGDFRGFGFKQAKAMSPSIFRSYANVLLN
CFPVRIKGIHVIEQPRIFTIVFAIVSQFMKEKLRKRVYLHGSNIVGMHQH
IAKSILPNDFGGDNSPTDVQEWLRFVLNGEEEYQHLWM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005608XLOC_005608Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009997TCONS_00009997Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001071CRAL-bd_toc_tran
IPR011074CRAL/TRIO_N_dom
IPR001251CRAL-TRIO_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
NoneNo IPR availableGENE3D1.10.8.20coord: 26..94
e-value: 5.4E-10
score: 39.0
IPR001071Cellular retinaldehyde binding/alpha-tocopherol transportPRINTSPR00180CRETINALDHBPcoord: 189..210
score: 39.77
coord: 254..263
score: 60.0
coord: 113..137
score: 27.0
coord: 66..88
score: 51.09
coord: 222..241
score: 41.25
IPR011074CRAL/TRIO, N-terminal domainSMARTSM01100CRAL_TRIO_N_2coord: 63..88
e-value: 6.2E-4
score: 29.1
IPR011074CRAL/TRIO, N-terminal domainPFAMPF03765CRAL_TRIO_Ncoord: 54..85
e-value: 7.0E-5
score: 22.8
IPR011074CRAL/TRIO, N-terminal domainSUPERFAMILY46938CRAL/TRIO N-terminal domaincoord: 27..104
IPR001251CRAL-TRIO lipid binding domainSMARTSM00516sec14_4coord: 107..265
e-value: 3.9E-26
score: 102.8
IPR001251CRAL-TRIO lipid binding domainGENE3D3.40.525.10coord: 96..287
e-value: 1.4E-40
score: 138.5
IPR001251CRAL-TRIO lipid binding domainPFAMPF00650CRAL_TRIOcoord: 112..263
e-value: 5.7E-29
score: 100.8
IPR001251CRAL-TRIO lipid binding domainPROSITEPS50191CRAL_TRIOcoord: 104..268
score: 18.965
IPR001251CRAL-TRIO lipid binding domainCDDcd00170SEC14coord: 122..262
e-value: 1.69455E-31
score: 114.79
IPR001251CRAL-TRIO lipid binding domainSUPERFAMILY52087CRAL/TRIO domaincoord: 109..274

Blast
[Close]
BLAST of TCONS_00009997-protein vs. Swiss-Prot (Human)
Match: TTPAL (Alpha-tocopherol transfer protein-like OS=Homo sapiens GN=TTPAL PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.384e-64
Identity = 99/266 (37.22%), Postives = 152/266 (57.14%), Query Frame = 0 
Query:   19 LSQLSPELVEKAKVELNEDPDTRMNFIQELREK-SKTRQDLRIEQADKDLIKFLRARKFDLDRAFDLMVTYYESKRDMSDLFTNYSPSGEIKAFESGFSIGFKDRDQEGRKIFAFRPGMWEPSERTLLDNLRANLIAIEMLLEEEETQICGIVIIGDFRGFGFKQAKAMSPSIFRSYANVLLNCFPVRIKGIHVIEQPRIFTIVFAIVSQFMKEKLRKRVYLHGSNIVGMHQHIAKSILPNDFGGDNSPTDVQEWLRFVLNGEEEY 283
            +  L+ +LV KA+ EL E P+ R+  +Q LR+   K   +L     D  L++FLRARKFD DRA  L+V Y+  +R   ++F N  PS       SGF       D  G  +   RP  W PS   + +N+RA  + +E L++ EETQ+ GIVI+ D++G    +A    P I +    +L + FP+RIK +HV+ +PRIF  +FAI+  F+KEK+  R +LHGS++  +H ++ +SILP ++GG     D   W   +L  E+++
Sbjct:   32 VCSLTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLKPSALKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGGTAGELDTATWNAVLLASEDDF 297
The following BLAST results are available for this feature:
BLAST of TCONS_00009997-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTPAL4.384e-6437.22Alpha-tocopherol transfer protein-like OS=Homo sap... [more]
back to top