TCONS_00010200-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010200-protein
Unique NameTCONS_00010200-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010200-protein ID=TCONS_00010200-protein|Name=TCONS_00010200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
IVVTGATNGIGKAIAKQLAKRGINLVLLSRSEEKLKATAQEIGNGVNIRT
IVYDFTTSDGYDVIRQQLKDVDVGILVNNVGVSYKHAEFYGDWDPQACDD
MIKVNIHSVLKMTRLVLDGMVSRKRGLLVHISSGSGYAPFPLYSVYSGTK
SFVNNFAESLYHEYAHKGIQSQFITPSFVSTNMTRNMKPNGFSVADVDHM
AQQTVNAFGLSSCLYGHWGHELIVTTLFKLLPRSYCCKKTLEFTTQVREA
YMRRMANK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005722XLOC_005722Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010200TCONS_00010200Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 4..21
score: 18.81
coord: 71..82
score: 39.51
coord: 146..165
score: 28.17
coord: 120..136
score: 28.52
coord: 167..184
score: 26.11
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00080SDRFAMILYcoord: 126..134
score: 37.75
coord: 71..82
score: 39.68
coord: 146..165
score: 30.79
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 1..188
e-value: 5.2E-45
score: 153.2
NoneNo IPR availablePIRSFPIRSF00012611-beta-HSD1coord: 1..254
e-value: 1.7E-77
score: 258.3
NoneNo IPR availableGENE3D3.40.50.720coord: 1..235
e-value: 2.8E-45
score: 154.2
NoneNo IPR availableCDDcd0535617beta-HSD1_like_SDR_ccoord: 2..234
e-value: 4.59509E-87
score: 260.614
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 1..228

Blast
[Close]
BLAST of TCONS_00010200-protein vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 4.540e-56
Identity = 102/257 (39.69%), Postives = 152/257 (59.14%), Query Frame = 0 
Query:    2 VVTGATNGIGKAIAKQLAKRGINLVLLSRSEEKLKATAQEIGNG--VNIRTIVYDFTTSDGYDVIRQQLKDVDVGILVNNVGVSYKHAEFYGDWDP--QACDDMIKVNIHSVLKMTRLVLDGMVSRKRGLLVHISSGSGYAPFPLYSVYSGTKSFVNNFAESLYHEYAHKGIQSQFITPSFVSTNMTRNMKPNGFSVADVDHMAQQTVNAFGLSSCLYGHWGHELIVTTLFKLLPRSYCCKKTLEFTTQVREAYMRR 254
            VVTG+T+GIGK+ A++LAK G+ +VL+SRS++KL   + EI     V  RTI  DF + D YD I+  L  +++GILVNNVG+SY++ E++ D          MI +NI SV KMT+LVL GMV R +G +++ISSGSG  P PL ++YS TK+FV+ F++ L+ EY  KG+  Q + P FV+T + +  KP        +   +  +   GL S   G+  H L+  ++   LP     K  +      R  Y+++
Sbjct:   54 VVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFASEDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAKIRKPT-LDKPSPETFVKSAIKTVGLQSRTNGYLIHALM-GSIISNLPSWIYLKIVMNMNKSTRAHYLKK 308
The following BLAST results are available for this feature:
BLAST of TCONS_00010200-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHB124.540e-5639.69Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sa... [more]
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