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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010200 ID=TCONS_00010200|Name=TCONS_00010200|organism=Clytia hemisphaerica|type=transcript|length=2382bpRun BLAST on NCBI protein sequence of TCONS_00010200-protein >TCONS_00010200-protein ID=TCONS_00010200-protein|Name=TCONS_00010200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp IVVTGATNGIGKAIAKQLAKRGINLVLLSRSEEKLKATAQEIGNGVNIRTRun BLAST on NCBI transcript from alignment at sc0000103:199725..217787- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010200 ID=TCONS_00010200|Name=TCONS_00010200|organism=Clytia hemisphaerica|type=transcript|length=18063bp|location=Sequence derived from alignment at sc0000103:199725..217787- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000103:199725..217787- >TCONS_00010200 ID=TCONS_00010200|Name=TCONS_00010200|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at sc0000103:199725..217787- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010200 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 6.967e-51 Identity = 102/257 (39.69%), Postives = 152/257 (59.14%), Query Frame = 1
Query: 4 VVTGATNGIGKAIAKQLAKRGINLVLLSRSEEKLKATAQEIGNG--VNIRTIVYDFTTSDGYDVIRQQLKDVDVGILVNNVGVSYKHAEFYGDWDP--QACDDMIKVNIHSVLKMTRLVLDGMVSRKRGLLVHISSGSGYAPFPLYSVYSGTKSFVNNFAESLYHEYAHKGIQSQFITPSFVSTNMTRNMKPNGFSVADVDHMAQQTVNAFGLSSCLYGHWGHELIVTTLFKLLPRSYCCKKTLEFTTQVREAYMRR 762
VVTG+T+GIGK+ A++LAK G+ +VL+SRS++KL + EI V RTI DF + D YD I+ L +++GILVNNVG+SY++ E++ D MI +NI SV KMT+LVL GMV R +G +++ISSGSG P PL ++YS TK+FV+ F++ L+ EY KG+ Q + P FV+T + + KP + + + GL S G+ H L+ ++ LP K + R Y+++
Sbjct: 54 VVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFASEDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAKIRKPT-LDKPSPETFVKSAIKTVGLQSRTNGYLIHALM-GSIISNLPSWIYLKIVMNMNKSTRAHYLKK 308 The following BLAST results are available for this feature:
BLAST of TCONS_00010200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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