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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00010704-protein ID=TCONS_00010704-protein|Name=TCONS_00010704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1901bp
MQKVEIIKIENAGKFQCRSDLDCEAYADNMADMYTYFMGNPTNEKLFVPK
LGEVYACYTSLGEGDKMWYRCLVTKLYNSKSGLIMGVFLVDEGEQVCVTK
ARMRDIPDRFKSLPHRVMKCTLDDLVPVTLNSYNADLEMSLQKAKHWDPS
ATTFLENLLEDSHPAITIHSQDEEGTMNVTLYTVKGNATLNVNELLEEKK
FAVKSKANLKPSISKLMPDIPDSVNKDLKSPTPLPSTPLGYQTPSKETTK
SSVSVSTADQFTPDVLMKRNKERQRQMELKKQETNQFINKECQDLLDLLH
GDTYSSRPAVQNPTKSKHSDHNTSETSDFSDIESTPLPKDASYKQAQRYS
SIAKEQVGENVLAKLLGIKPVAEKPKMNKIEEFLNTETQQSQPFDIITDD
LKLKTSTGPSHLTVPSQLIRAIGSSSKRKSKDATQLDVLVYGKEKREPIM
SLEALNLPDPIVSYLRTLSFDRPSQFQMHMWPAILASKNVVGIADTYSSG
ISRILSYLLPLIRNLIMDNITYPELGRGNGPYVIICVNEWQEAQLVYDLC
EKLLVYYKKRLRVDVRYGGMDNRGQRNIRMLNGCEILVTTIISLNEAIEA
GYTNLNRLCHIVFDNAHKLFENFTEDVQKLMLSYETVMQNNSNLTVNQII
VIGMKWSFGIDSFMRQCINPSPLVVISNKIEAALFAKVPITVEVCKANDR
LEYLTGFLETDVREESSIIFTNSARTADELQQSLRSYSIAATVITEFMQP
TEIKDARSAWNSAIKSKGMNVLVLSDQASGAVRIRNASVVVHYDFPNKKD
FGNRLLCLLNNIQENENNPDPKKLLSHLFVTEQNNGMKYSTGLVKLLKRS
GQHIPEHLKSMAASARELKEEQKQYQELCPRLKLFGECSYIDDCSERHSV
FPDKDFLGLCPNTGFVKVKILDVVSASCFFCRIIEHRLPFEGQPYDTSVY
LSLNMDMNLHYSAEENRKQCSKVEKYDICVAKCGDFNYERVRIEKVVEKD
LERPKILEVFSIDNGLTKVVKLSDLLICDDKFKSVPHQAIEVIACCVKPV
ERGTSWTHESSATVEKKIKGKVLEGRVKLSLQNTMWVDPLAEKELLEGMH
TMTYTLDIGRELINLNFAEKNTTHLENLRKLLYDVQGHTLETKSSNSGLP
LFMLKSEEEFLSEDTYEEVYVSSVTNPALFFVQRAEHIEMLDKLDAKIDA
TMTVTKPNPEFLTTNFPIGYICVAKFSVDDKWYRGKILGLNELVGEYDVF
FVDHGDREWIGKSKVVPAWPDIMTLPFQAIQCSFKDVTPKEGNEWTLEDG
DVLWDKACEKLLQCQALSVGPSDYIPNRIAYVVSIFDTTGNINVNISHEL
VYAGIASGSLECLQTIFPKADTTKDRKEKVYKNGSDEIPDLCVDIYLAQH
GDLKISLSKEITHILAKVQNDFEYLTDNDSIQSLCKLLALNHHEPSNEEL
LAALEIPLRKDDRCAECMYHNNGIQVVLNLLKDCETVALKKASIRLLKVL
ARDEWYQGTMLDYEAMKQLVEMMKTSQDSQMTCLLIDLIGLLCRENSTGC
AQFRQQDGLELLCKLVTTENTDFNVLDSCGKTFLEVLDDHRNCERIRNCG
GLQDIVFVIGRRLTDAVLLTYLEILHLVTQGLDNVPNREHLYHIQAHKEL
RRISQMPVRYSPKVKELFQYLIEYIEPEPLVSMEQLKRDAQEIDPRFYSK
KEQSAPKTENYQRGAPMTFWSQVATTITLSINLRGVEAEETVVQPFHIVF
KTFMNSVEYILDLKLYAEVDDKNYNVDVKGGEVLIKLQKVRPDFWPRLVE
SKQKLPYLRYDFDRWQEGMGGNTNSNVNDLDDDDNSDDSPVSFSTFLPGL
PPPPKSKPDPTGRPAPIFDVTSSDSSGDESNDDDFDDGFHRDGVGNDFFK
L Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
| GO:0005488 | binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0005488 |
binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 858..878 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 685..819
e-value: 2.3E-10
score: 39.7 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 1212..1255
e-value: 3.6E-13
score: 48.5
coord: 969..1015
e-value: 3.1E-4
score: 19.9 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 241..651
e-value: 1.6E-17
score: 63.0 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 24..98
e-value: 2.9E-10
score: 39.5 |
| None | No IPR available | GENE3D | 2.40.50.90 | | coord: 1016..1122
e-value: 6.8E-16
score: 58.0
coord: 99..206
e-value: 5.3E-17
score: 61.6
coord: 1256..1360
e-value: 2.9E-21
score: 75.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1821..1889 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 213..265 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 303..337 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 1219..1267
e-value: 1.45207E-11
score: 61.0747 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 977..1025
e-value: 0.00141712
score: 37.5776 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 1199..1287 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 24..125 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 948..1043 |
| IPR002999 | Tudor domain | SMART | SM00333 | TUDOR_7 | coord: 1214..1273
e-value: 1.1E-7
score: 41.6
coord: 971..1033
e-value: 21.0
score: 5.3
coord: 47..111
e-value: 3.3
score: 12.1 |
| IPR002999 | Tudor domain | PFAM | PF00567 | TUDOR | coord: 922..1042
e-value: 8.9E-7
score: 28.9
coord: 3..123
e-value: 2.7E-12
score: 46.7
coord: 1163..1285
e-value: 2.2E-21
score: 76.0 |
| IPR002999 | Tudor domain | PROSITE | PS50304 | TUDOR | coord: 1215..1275
score: 14.109 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 700..797
e-value: 8.3E-5
score: 22.8 |
| IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 700..862
score: 9.697 |
| IPR011545 | DEAD/DEAH box helicase domain | PFAM | PF00270 | DEAD | coord: 475..639
e-value: 1.4E-9
score: 37.9 |
| IPR011989 | Armadillo-like helical | GENE3D | 1.25.10.10 | | coord: 1423..1626
e-value: 8.9E-15
score: 54.1 |
| IPR008978 | HSP20-like chaperone | GENE3D | 2.60.40.790 | | coord: 1713..1813
e-value: 5.4E-16
score: 58.4 |
| IPR008978 | HSP20-like chaperone | SUPERFAMILY | 49764 | HSP20-like chaperones | coord: 1716..1832 |
| IPR014014 | RNA helicase, DEAD-box type, Q motif | PROSITE | PS51195 | Q_MOTIF | coord: 450..478
score: 7.163 |
| IPR007052 | CS domain | PROSITE | PS51203 | CS | coord: 1713..1799
score: 11.652 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 481..633
score: 9.937 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 437..634 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 604..797 |
| IPR016024 | Armadillo-type fold | SUPERFAMILY | 48371 | ARM repeat | coord: 1426..1629 |
Blast
BLAST of TCONS_00010704-protein vs. Swiss-Prot (Human)
Match: TDR12 (Putative ATP-dependent RNA helicase TDRD12 OS=Homo sapiens GN=TDRD12 PE=2 SV=2) HSP 1 Score: 256.529 bits (654), Expect = 2.448e-69 Identity = 186/711 (26.16%), Postives = 346/711 (48.66%), Query Frame = 0
Query: 439 LVYGKEKREPIMSLEALNLPDPIVSYLRTLSFDRPSQFQMHMWPAILASKNVVGIADTYSSGISRILSYLLPLIRNLIMDNITYPELGRGNGPYVIICVNEWQEAQLVYDLCEKLLVYYKKRLRVDVRYGGMDNRGQRNIRMLNGCEILVTTIISLNEAIEAGYTNLNRLCHIVFDNAHKLFENFTEDVQKLMLSYETVMQNNSNLTV-NQIIVIGMKWSFGIDSFMRQCINPSPLVVISNKIEAALFAKVPITVEVCKANDRLEYLTGFLE-TDVREESSIIFTNSARTADELQQSLRSYSIAATVITEFMQPTEIKDARSAWNSAIKSKGMNVLVLSDQASGAVRIRNASVVVHYDFP-NKKDFGNRLLCLLNNIQENENNP---DPKKLLSHLFVTEQNNGMKYSTGLVKLLKRSGQHIPEHLKSMAASARELKEEQKQYQELCPRLKLFGECSYIDDCSERHSVFPDKDF-----LGLCPNTGFVKVKILDVVSASCFFCRIIEHRLPFEGQPYDTSVYLSLNMDMNLHYSAEENRKQCSKVEKYDICVAKCGDFNYERVRIEKVVEKD--LERPKILEVFSIDNGLTKVVKLSDLLICDDKFKSVPHQAIEVIACCVKPVERGTSWTHESSATVEKKIKGKVLEGRVKLSLQNTMWVDPLAEKELLEGMHTMTYTLDIGRELINLNFAEKNTTHLENLRKLLYDVQ 1136
+V + K +P +++++ L + L+ F PS + + WP I +VV I+ S+ L YLLP++ ++ Y L NGP +I W++AQ +++L + + + L + G+ +N ++ GC+++VTT SL + RLCH++ D LF E + ++ +++ ++ + +QI+ +G+ W+ I+ +++ +N P +VI+ EAAL+ V V +C ++ L L+ + + ++IFT S + + + + S SI + + M +++ W + S +L L+D + I +A+ V+H+ FP + K FG RL C+ ++ + +P KK S L +TE++ ++ G+++ L+R+ +P L A E KE++K + LCP LK FG C C +RH + P+ D P+ G++K+ +++A+ +F RI++ + +Y +LN +MN Y + N+ KVEK+ + + RV++ +V +K+ IL F ID G T +V LL + F ++P QA+E I C VKP + W + + + KI GK+ + +V L+L NT+W+DP+ L + T ++ E++++ N H+E L+KL D +
Sbjct: 405 VVVLRNKIKPCLTIDSSPLSADLKKALQRNKFPGPSHTESYSWPPIARGCDVVVISHCESNP----LLYLLPVL-TVLQTGACYKSLPSRNGPLAVIVCPGWKKAQFIFELLGEYSMS-SRPLHPVLLTIGLHKEEAKNTKLPRGCDVIVTTPYSLLRLLACQSLLFLRLCHLILDEVEVLFLEANEQMFAILDNFKKNIEVEERESAPHQIVAVGVHWNKHIEHLIKEFMN-DPYIVITAMEEAALYGNVQQVVHLCLECEKTSSLLQALDFIPSQAQKTLIFTCSVAETEIVCKVVESSSIFCLKMHKEMI-FNLQNVLEQWKKKLSSGSQIILALTDDCVPLLAITDATCVIHFSFPASPKVFGGRLYCMSDHFHAEQGSPAEQGDKKAKSVLLLTEKDAS--HAVGVLRYLERADAKVPAELYEFTAGVLEAKEDKKAGRPLCPYLKAFGFCKDKRICPDRHRINPETDLPRKLSSQALPSFGYIKIIPFYILNATNYFGRIVDKHM---------DLYATLNAEMN-EYFKDSNKTTVEKVEKFGL-YGLAEKTLFHRVQVLEVNQKEDAWALDDILVEF-IDEGRTGLVTRDQLLHLPEHFHTLPPQAVEFIVCRVKPADNEIEWNPKVTRYIHHKIVGKLHDAKVILALGNTVWIDPMVHITNLSSLKTSVIDYNVRAEILSMGMGIDNPEHIEQLKKLREDAK 1093
The following BLAST results are available for this feature:
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