TCONS_00010785-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010785-protein
Unique Name	TCONS_00010785-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	356

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010785-protein ID=TCONS_00010785-protein|Name=TCONS_00010785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MVTDISEMEQQYFDDPKEEANYWKQIAEEYIQKLQDVKDEFDDFQEGSRE
LEAELEAQLEQYEKRVKELVNTRSTLEEENEMLKEKLETTQRESYIQITT
LQDENTQIRTVKDEMTKYIREIEQTNDDLERAKRATICSLEEFDSRLNSA
IERNAFLENELEEKEELIITVQRLKDEARDLKADLALSSRTRHPSLSEQS
SKSSSFNESPTKPPLDATTTTTPKSSETTHEIVNNTSSHQITNTPKKNHE
TMEAEKNKANALHNSTTPPSRIQQSNPMTPSARISALNIVSDLLRKVGAL
ESKLASCRNFVQDHPRNGKTIHGVAPLTDSPKSRSKSTTGGNKGSNNISG
LVKVNV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006058	XLOC_006058	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010785	TCONS_00010785	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006964	NUDE_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..135
None	No IPR available	COILS	Coil	Coil	coord: 27..93
None	No IPR available	COILS	Coil	Coil	coord: 140..191
None	No IPR available	GENE3D	1.20.1170.10		coord: 4..199 e-value: 6.9E-6 score: 24.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 315..356
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..253
IPR006964	NUDE domain	PFAM	PF04880	NUDE_C	coord: 139..321 e-value: 1.3E-27 score: 97.3

Blast

[Close]

BLAST of TCONS_00010785-protein vs. Swiss-Prot (Human)
Match: NDEL1 (Nuclear distribution protein nudE-like 1 OS=Homo sapiens GN=NDEL1 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 3.062e-88
Identity = 160/340 (47.06%), Postives = 208/340 (61.18%), Query Frame = 0

Query:   13 FDDPKEEANYWKQIAEEYIQKLQDVKDEFDDFQEGSRELEAELEAQLEQYEKRVKELVNTRSTLEEENEMLKEKLETTQRESYIQITTLQDENTQIRTVKDEMTKYIREIEQTNDDLERAKRATICSLEEFDSRLNSAIERNAFLENELEEKEELIITVQRLKDEARDLKADLALSSRTRHPSLSEQSSKSSSFNESPTKPPLDATTTTTPKSSETTHEIVNNTSSHQITNTPKKNHETMEAEKNKANALHNSTTPPSRIQQSNPMTPSARISALNIVSDLLRKVGALESKLASCRNFVQDHPR-----NGKTIHGVAPLTDSPKSRSKSTTGGNKGSNN 347
            F   KEE  YWK+++ +Y Q  Q+ +DE  +FQEGSRELEAELEAQL Q E+R ++L      L+ E E LKEKLE    +SY Q++ L+D+ +Q R +K+++ KY+RE+EQ NDDLERAKRATI SLE+F+ RLN AIERNAFLE+EL+EKE L+++VQRLKDEARDL+ +LA+  R R   ++ +S        +P+ P LD          E     V  + S   T   K    T  + K   N    S           P+TPSARISALNIV DLLRKVGALESKLA+CRNF +D        +G    GV     +  SRS  T+  +KG+ N
Sbjct:    9 FSSLKEETAYWKELSLKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAV--RERQQEVTRKS--------APSSPTLDC---------EKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFGTS-----------PLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKSYISGNVNCGVLNGNGTKFSRSGHTSFFDKGAVN 318

The following BLAST results are available for this feature:

BLAST of TCONS_00010785-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010785-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NDEL1	3.062e-88	47.06	Nuclear distribution protein nudE-like 1 OS=Homo s...	[more]

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TCONS_00010785-protein (polypeptide) - C. hemisphaerica