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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00011116-protein ID=TCONS_00011116-protein|Name=TCONS_00011116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1084bp
MIPLGIHHQNQHSYDGSNNTPNRKRPSSALNTSTETFVKENVVDSAKRKK
LCTDSRKSKPGPWKLLTHDVLARFDDEYQPGTISDFRETGHVSIQLDSDN
SSKSFDLSTGIDYVIINAAPNKSDITCGCMVCVRLPTADVFVKGVVLEIK
DRPLKYKIKVNGHNNEKWFSRMDIRCIRPPVIKNENYDDEATDSALSETE
VDTEVDEVFTTKRMDSMPSSSRSSTPQSIGSRSSRATTPHNYKKGDILIA
NDGFRKKFNGKQWRRLCSARNCEKESQKKGLCSRHFSSQNDQSLKRHSES
HTPDTSSNHSATPSEYPSWLDESAVEAASTLMTLSRCATPYSDSPVLLKS
PVSSISPSKMYHHTTISPCTTYHSVIIASSSTPKVSPNRMSLNSTPSLPV
SPDSGICLSLREDKHSSPSVKLQETMSSNFGAKNRFSPINPLISTSIPSS
IIQSPVPIQPLPTKPSIYDSPPMLNKASVSPFPLGSEKSVFTKPGLIPKA
TGRSSILDNSGMSDSPTNVSWSMPTSKTNETPEKSPRKTPSKSNKEHIRR
PMNAFMIFSKKHRHLVHQKHPNQDNRTVSKILGEMWYAVSPEEQQMYRKL
ADEVKEQHYKNNPEWKWSSKDRKNSRTTKQKSEDGTSSTTPRPHFEQKSP
GDVQLECKEDSPSMFNFDPTKHTPPPPLHEILKGPHHITKSKVFNFDNYS
PITSEFEHNRSSIQLEKQQEKLYQQQQPSPQYPIGTHQQTVTMPTLLPNK
PSVMPVMISSKVSPSTTPKAFSISNIIQKDEKPSAQLSPHATITNNGIAS
SQPVTVLKQQNINININDGRQSVLLFGTSQSSQPPNLIRHHPQDPNKAAQ
SLLLIPASVNELRTPQQMESSAFSKYQPLSSHQHVMHNDASWKSLRMSGT
SNTVTGMRSSSVARIRFDDSKTEVVTDRSVKSEPTTPTPGSPSKKSILKR
QSNDGMEKVFEQVDFEQHFRKLPEFNPAGDQFASNAATSSSHQNSYPNEF
FFGDSDPAGAASQSLTSNRQVLDKRRNLVMKLFEQYGYYPPDSATVTFQQ
QHKDLFPNRFSLQVKIREVRQNLRKASPRKIKGE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR009071 | High mobility group box domain | SMART | SM00398 | hmgende2 | coord: 547..617
e-value: 3.7E-17
score: 73.0 |
| IPR009071 | High mobility group box domain | PFAM | PF00505 | HMG_box | coord: 549..616
e-value: 1.3E-17
score: 63.8 |
| IPR009071 | High mobility group box domain | GENE3D | 1.10.30.10 | | coord: 540..641
e-value: 4.2E-24
score: 84.4 |
| IPR009071 | High mobility group box domain | PROSITE | PS50118 | HMG_BOX_2 | coord: 548..616
score: 17.28 |
| IPR009071 | High mobility group box domain | SUPERFAMILY | 47095 | HMG-box | coord: 534..617 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 116..184
e-value: 0.034
score: 13.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 278..318 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 210..244 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 921..952 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 976..1017 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 614..662 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..31 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 490..549 |
| None | No IPR available | CDD | cd01388 | SOX-TCF_HMG-box | coord: 547..617
e-value: 3.07981E-34
score: 126.259 |
| IPR032147 | Domain of unknown function DUF4819 | PFAM | PF16090 | DUF4819 | coord: 114..180
e-value: 2.0E-13
score: 50.1 |
Blast
BLAST of TCONS_00011116-protein vs. Swiss-Prot (Human)
Match: CIC (Protein capicua homolog OS=Homo sapiens GN=CIC PE=1 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 3.568e-36 Identity = 62/101 (61.39%), Postives = 80/101 (79.21%), Query Frame = 0
Query: 538 KTPSKSNKEHIRRPMNAFMIFSKKHRHLVHQKHPNQDNRTVSKILGEMWYAVSPEEQQMYRKLADEVKEQHYKNNPEWKWSSKDRKNSRTTKQKSEDGTSS 638
++P+K K+HIRRPMNAFMIFSK+HR LVHQ+HPNQDNRTVSKILGE WYA+ P+E+Q Y LA +VKE H+K +P+WKW +KDRK S + + + G +
Sbjct: 190 RSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAG 290
The following BLAST results are available for this feature:
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