TCONS_00011129-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011129-protein
Unique Name	TCONS_00011129-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	608

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011129-protein ID=TCONS_00011129-protein|Name=TCONS_00011129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp
MESDQNNAEEVSTGGNENMDSPPQVSTVEPTQVEETNDKSPPQSASAENS
VEDRNDMSIDESSVLSSDGGTMDQSMESQKTNTSMEEVRDSPSSDTTQPQ
GDVVDGENVEKNDEPVKESSNVSHTEDTTETTVENSNATTKLEPAKQDDD
DIVQVKPDPPTDDSSIETSNSAHASQQQSISAPRDQQQDSIYHLKWFDWK
GIQTPIITQNENGPCPLLGIANVLILARKIELPPMQQIISGKQLMEYIGD
CILSSAPEQDRDNEELILNYQQNMQDAIDIMYKLQTGIDVNVKFTGVVDF
EFTRECIVFDLLKIALYHGWMVDPQDEPAVKAIHNLSYNQIVEKMLTAKE
STDDNVLSEGLAIEDFLSRTASQLTYHGLCELNNTVQEEELCVFFRNNHF
STLYKHKGELFLLVTDQGFLTEPAVIWETLVNIEGDGQFVNSEYRSIQLD
SNTVPPAPQAAAGANTAVHPSESKTSTATMQSNLSQEDQDYLIALSLQQQ
DGSSPVTQPKFSSDDSSKQQSQQSRIDQDHALALQLQEDEDRRARLEQQQ
QQQQGDPQQAQGNPPPPQQPQGNPLPQQSQQPSSNQRPPQGNSGSQRLQE
KDDKCVII

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006230	XLOC_006230	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011129	TCONS_00011129	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033979	MINDY_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:1990380	Lys48-specific deubiquitinase activity
GO:0004843	thiol-dependent ubiquitin-specific protease activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:1990380	Lys48-specific deubiquitinase activity
molecular_function	GO:0004843	thiol-dependent ubiquitin-specific protease activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 536..556
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 499..527
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 542..608
IPR033979	MINDY deubiquitinase domain	PFAM	PF04424	MINDY_DUB	coord: 222..345 e-value: 2.0E-35 score: 121.2

Blast

[Close]

BLAST of TCONS_00011129-protein vs. Swiss-Prot (Human)
Match: MINY1 (Ubiquitin carboxyl-terminal hydrolase MINDY-1 OS=Homo sapiens GN=MINDY1 PE=1 SV=2)

HSP 1 Score: 349.747 bits (896), Expect = 1.645e-114
Identity = 172/341 (50.44%), Postives = 231/341 (67.74%), Query Frame = 0

Query:  166 IETSNSAHASQQQSISAPRDQQQDSIYHLKWFDWKGIQTPIITQNENGPCPLLGIANVLILARKIELPPMQQIISGKQLMEYIGDCILSSAPEQDRDNEELILNYQQNMQDAIDIMYKLQTGIDVNVKFTGVVDFEFTRECIVFDLLKIALYHGWMVDPQDEPAVKAIHNLSYNQIVEKMLTAKESTDDNVLSEGLAIEDFLSRTASQLTYHGLCELNNTVQEEELCVFFRNNHFSTLYKHKGELFLLVTDQGFLTEPAVIWETLVNIEGDGQFVNSEYRSIQLDSNTVPPAPQAAAGANTAVHPSESKTSTATMQSNLSQEDQDYLIALSLQQQDGSSPV 506
            +ET  +    Q+   S    Q +   Y +KW  WKG QTPIITQ+ NGPCPLL I N+L L  K++LPP +++I+  +LM ++G+C+LS  P++   +E L LN+QQN+ DA+ ++ KL TG+DVNV+FTGV DFE+T EC VFDLL I LYHGW+VDPQ   AV+A+  LSYNQ+VE+++T K S+D N+++EGL  E FL  TA+QLTYHGLCEL    +E EL VFFRNNHFST+ KHK  L+LLVTDQGFL E  V+WE+L N++GD  F +S++      S+++   P A  G+ +              ++ L Q DQDYLIALSLQQQ    P+
Sbjct:   88 VETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEK--SEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHL----SHSLGKGPGAEGGSGSP-------------ETQL-QVDQDYLIALSLQQQQPRGPL 408

The following BLAST results are available for this feature:

BLAST of TCONS_00011129-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011129-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MINY1	1.645e-114	50.44	Ubiquitin carboxyl-terminal hydrolase MINDY-1 OS=H...	[more]

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TCONS_00011129-protein (polypeptide) - C. hemisphaerica