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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011129 ID=TCONS_00011129|Name=TCONS_00011129|organism=Clytia hemisphaerica|type=transcript|length=2774bp
AATATATCGTTCTTACTGTTTGGCCAATAGAGATTTCAAGTTTATTTCAC
TCAATTTGTTCTCCTCTTAAAATTAGCTATACTGTTTTGTTGtatttttc
agctcaaataaCATTTTAATTGATAAAACCATAACAAAAATACACCTTCC
AAAAAGAACAAGGATAAACAAAAacaacgatggagagcgatcaaaACAAT
GCAGAGGAGGTATCCACGGGTGGCAATGAAAACATGGACTCTCCCCCGCA
GGTCTCCACTGTGGAACCAACACAGGTTGAAGAAACAAATGATAAATCTC
CGCCACAGAGTGCGAGTGCAGAGAACAGTGTAGAAGATCGAAATGATATG
TCTATTGATGAAAGTTCAGTTTTGTCATCTGATGGTGGAACAATGGACCA
ATCTATGGAAAGTCAGAAAACGAATACTTCTATGGAAGAGGTGAGAGATT
CGCCATCAAGCGATACAACTCAACCACAAGGAGATGTTGTTGATGGAGAG
AATGTGGAGAAGAATGATGAACCAGTTAAAGAGTCGTCTAATGTTTCTCA
CACAGAAGATACAACCGAAACCACGGTTGAAAATTCTAATGCGACCACTA
AACTAGAACCTGCCAAACAAGATGACGACGACATCGTCCAAGTTAAGCCA
GACCCGCCAACTGATGATTCGTCTATTGAAACTTCTAATTCCGCGCATGC
GTCCCAACAACAATCGATTTCTGCACCACGTGACCAACAGCAAGATTCGA
TTTATCACCTAAAGTGGTTCGATTGGAAAGGTATACAGACACCCATCATT
ACACAAAACGAGAATGGACCTTGTCCACTATTGGGCATTgctaatgtttt
gattttagcaagaAAGATTGAACTGCCACCGATGCAACAAATTATCAGTG
GCAAACAGTTGATGGAGTACATAGGCGATTGTATTTTATCGAGTGCACCA
GAACAAGATCGCGATAACGAAGAACTCATCCTCAACTATCAACAAAACAT
GCAAGATGCGATCGATATCAtgtacaaattacagaccggaataGATGTCA
ACGTCAAATTCACAGGTGTGGTTGATTTTGAATTTACACGTGAATGTATC
GTGTTCGACTTGCTGAAAATTGCTCTTTACCATGGCTGGATGGTGGACCC
GCAAGACGAACCGGCTGTCAAAGCGATCCACAATCTCAGCTACAAtcaaa
ttgtcgaaaaaatGCTGACCGCTAAAGAAAGTACAGACGACAATGTCTTG
AGTGAAGGACTGGCAATCGAAGACTTTTTATCACGCACGGCTAGTCAGCT
AACGTACCATGGTTTGTGTGAACTGAACAACACTGTCCAAGAAGAAGAGC
TATGCGTATTTTTCAGAAACAACCATTTCTCAACTCTGTATAAACACAAA
GGCGAACTTTTCTTGTTAGTCACCGATCAAGGCTTTTTAACGGAACCGGC
TGTGATCTGGGAAACGTTGGTGAACATTGAAGGCGATGGACAGTTCGTCA
ATTCAGAATATCGATCTATACAGTTAGATAGTAATACGGTGCCACCTGCT
CCGCAAGCTGCCGCTGGTGCCAACACCGCAGTACACCCGTCTGAATCTAA
GACTTCAACTGCCACAATGCAATCGAACTTATCACAAGAAGACCAGGACT
ATTTAATTGCTTTATCACTGCAACAGCAGGACGGAAGCAGCCCTGTGACG
CAACCGAAATTTTCAAGTGACGATAGTTCAAAGCAGCAGTCACAACAATC
TCGTATTGACCAAGACCATGCTCTCGCTTTACAGCTTCAAGAGGATGAGG
ACCGTAGAGCGCGCTtagaacaacaacaacaacagcagcagGGAGATCCC
CAACAAGCTCAAGGGAATCCTCCACCACCACAACAACCACAAGGGAATCC
TCTTCCTCAGCAGTCGCAACAACCGAGTTCGAATCAAAGACCTCCTCAGG
GGAATTCTGGAAGTCAAAGATTACAAGAAAAGGACGACAAGTGCGTGATT
ATCTGAATTCTGGATGTAAAAGTTTAGAATGGTTGAATGATAATGGGCGC
ATGATAATCGGCTCTTCGAGCGCAAGGCTAATCCATGTCAGTGAAATTGG
TTGTAACAACTTCATGTAACAATGTTCAGATTTCTCATCCAGTGATTGGA
GGAATTTATTTTTCGCTATCAAACACGAATGCGGGAGAAGAAATCACGTC
CCATCATTTTTGAGATGACATCTCTTTAAGTAAATTCTCTAAGGGTAGAA
GTGCAGTTTTAAATCCTAAATGACCCGAATTTTGATTACCGATGCTGTCA
ATTTTCATTTGGTGCGTGTTTAACTTGGAGAACAAACAGTGTTATGCTTG
GTGTATGGACATTTTGGTTTTGTGAACAATTCTTGCTGCTTACTTTATGA
TGCATACAGTTCTTCCTTTGAAacgatttgaaagaaaatttttgttatgt
AACTTTCTTCTTGGCTTAACTTTATTGATATTTAATTTTGCACTGTTTGC
AGTTCTAGTCAAGCTCctaaatacactttttcgaccgAATTATCcctcta
aactcgatccaatccttttttacacctcTATTGTCTTTGGGTGCGAAAAA
GACTGGGATGgctttagggtggtaaaacgaaCACAAAATTGTCtgcgcgg
caattggcagctacggtcgaaaaggtgtattgtagcgaaagaatttttac
tttaccttatcaatagacgatatcggctttccgaattctccccgaatgat
tacccatgatgcattgcgcaaaaa Run BLAST on NCBI protein sequence of TCONS_00011129-protein >TCONS_00011129-protein ID=TCONS_00011129-protein|Name=TCONS_00011129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp
MESDQNNAEEVSTGGNENMDSPPQVSTVEPTQVEETNDKSPPQSASAENS
VEDRNDMSIDESSVLSSDGGTMDQSMESQKTNTSMEEVRDSPSSDTTQPQ
GDVVDGENVEKNDEPVKESSNVSHTEDTTETTVENSNATTKLEPAKQDDD
DIVQVKPDPPTDDSSIETSNSAHASQQQSISAPRDQQQDSIYHLKWFDWK
GIQTPIITQNENGPCPLLGIANVLILARKIELPPMQQIISGKQLMEYIGD
CILSSAPEQDRDNEELILNYQQNMQDAIDIMYKLQTGIDVNVKFTGVVDF
EFTRECIVFDLLKIALYHGWMVDPQDEPAVKAIHNLSYNQIVEKMLTAKE
STDDNVLSEGLAIEDFLSRTASQLTYHGLCELNNTVQEEELCVFFRNNHF
STLYKHKGELFLLVTDQGFLTEPAVIWETLVNIEGDGQFVNSEYRSIQLD
SNTVPPAPQAAAGANTAVHPSESKTSTATMQSNLSQEDQDYLIALSLQQQ
DGSSPVTQPKFSSDDSSKQQSQQSRIDQDHALALQLQEDEDRRARLEQQQ
QQQQGDPQQAQGNPPPPQQPQGNPLPQQSQQPSSNQRPPQGNSGSQRLQE
KDDKCVII Run BLAST on NCBI transcript from alignment at sc0000121:419767..430921- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011129 ID=TCONS_00011129|Name=TCONS_00011129|organism=Clytia hemisphaerica|type=transcript|length=11155bp|location=Sequence derived from alignment at sc0000121:419767..430921- (Clytia hemisphaerica)
AATATATCGTTCTTACTGTTTGGCCAATAGAGATTTCAAGTTTATTTCAC
TCAATTTGTTCTCCTCTTAAAATTAGCTATACTGTTTTGTTGTATTTTTC
AGCTCAAATAACATTTTAATTGATAAAACCATAACAAAAATACACCTTCC
AAAAAGAACAAGGATAAACAAAAACAACGATGGAGAGCGATCAAAACAAT
GCAGAGGAGGTATCCACGGGTGGCAATGAAAACATGGACTCTCCCCCGCA
GGTCTCCACTGTGGAACCAACACAGGTTGAAGAAACAAATGATAAATCTC
CGCCACAGAGTGCGAGTGCAGAGAACAGTGTAGAAGATCGAAATGATATG
TCTATTGATGAAAGTTCAGTTTTGTCATCTGATGGTGGAACAATGGACCA
ATCTATGGAAAGTCAGAAAACGAATACTTCTATGGAAGAGGTGAGAGATT
CGCCATCAAGCGATACAACTCAACCACAAGGAGATGTTGTTGATGGAGAG
AATGTGGAGAAGAATGATGAACCAGTTAAAGAGTCGTCTAATGTAAGTCT
CAATAACTTTTTAAGGCTAAGCTCAAAGTTGTCAAGTCTCATAGAAATAG
CAACAAAACTTTCCTTGTAAATTTGTAAGAGTTTTGACAAGATTAAGTTA
AAAAGTCAAATTGTCCAGCTTTTGCAAATGAATTTGGTCAATTTGGCGAT
GCTGATTTGGAATTTGAATTTTACCAAACTTGATAAACCGCAGTTTTTTT
ACGTACGAATTGCCAGGCAGAACTCAAAGGTATGAAAATCCATAAGTTTT
AGAGGGTTTATTGATATGGGTACCTAATGCACTTGTGATTTTCCTTTTGC
TAAATTCAGGTTTCTCACACAGAAGATACAACCGAAACCACGGTTGAAAA
TTCTAATGCGACCACTAAACTAGAACCTGCCAAACAAGATGACGACGACA
TCGTCCAAGTTAAGCCAGACCCGCCAACTGATGATTCGTCTATTGAAACT
TCTAATTCCGCGCATGCGTCCCAACAACAATCGATTTCTGCACCACGTGA
CCAACAGCAAGATTCGATTTATCACCTAAAGTGGTTCGATTGGAAAGGTA
TTTAAATTTTCTCTTCTGAAGATAATCTCAAGATGAAAAGCTATAACTAC
TTGTGGTGAAGTTTGATTTTTATTTTTGAATTTTATCTTAGCGACGTTGA
TAGTCAGTATTGTCTATGTTTATGCCTAACGGTATATATACGGTCGTAGT
ATGGTATAACATCGGGCTACGGTGTGCAAGGTCATGGCTTCAATCCCTGT
TCGGATCCTACCAAAAACTTCGTACTTAGTACAAAAAAGGAATATGATGC
TTCTCTACCTGAAGCTCAGTAATTAACAGAAGGGTCAAAGGTGAAGCAAT
GCGGGGAGAAAGAGTGGAGCCCTCTACCTACCTTCTGTTAGACAGTAACG
AAAGAGGAGTCTTCGGGTCGCCAACTTACATACTAGCTTAAATAAGAAGA
ATAAGTTAATATAACGGACAAATAACGGCCAACTCTGACATTTTGGACGG
TTATAGGGCTAAAAGTCGAAAACCTGGGGGGCCATTAAGCAATTTTTAGA
TCTTTTGAAGAACTTGAAAATATTGGACGAGAACCTAATTTATTGCCTCG
AACATGAACCAAAGACTCCATGGAGAAATTCAAAAATGGAATTCATTCGT
AGCCAATCAAAAGACAACTACGTAATGTGGAGCCTTTTTTTTCACCAGGT
ATACAGACACCCATCATTACACAAAACGAGAATGGACCTTGTCCACTATT
GGGCATTGCTAATGTTTTGATTTTAGCAAGAAAGATTGAACTGCCACCGA
TGCAACAAATTATCAGTGGCAAACAGTTGATGGAGTACATAGGTCANACT
TGATAAACCGCAGTTTTTTTACGTACGAATTGCCAGGCAGAACTCAAAGG
TATGAAAATCCATAAGTTTTAGAGGGTTTATTGATATGGGTACCTAATGC
ACTTGTGATTTTCCTTTTGCTAAATTCAGGTTTCTCACACAGAAGATACA
ACCGAAACCACGGTTGAAAATTCTAATGCGACCACTAAACTAGAACCTGC
CAAACAAGATGACGACGACATCGTCCAAGTTAAGCCAGACCCGCCAACTG
ATGATTCGTCTATTGAAACTTCTAATTCCGCGCATGCGTCCCAACAACAA
TCGATTTCTGCACCACGTGACCAACAGCAAGATTCGATTTATCACCTAAA
GTGGTTCGATTGGAAAGGTATTTAAATTTTCTCTTCTGAAGATAATCTCA
AGATGAAAAGCTATAACTACTTGTGGTGAAGTTTGATTTTTATTTTTGAA
TTTTATCTTAGCGACGTTGATAGTCAGTATTGTCTATGTTTATGCCTAAC
GGTATATATACGGTCGTAGTATGGTAGAACATCGGGCTACGGTGTGCAAG
GTCATGGCTTCAATCCCTGTTCGGATCCTACCAAAAACTTCGTACTTAGT
ACAAAAAAGGAATATGATGCTTCTCTACCTGAAGCTCAGTAATTAACAGA
AGGGTCAAAGGTGAAGCAATGCGGGGAGAAAGAGTGGAGCCCTCTACCTA
CCTTCTGTTAGACAGTAACGAAAGAGGAGTCTTCGGGTCGCCAACTTACA
TACTAGCTTAAATAAGAAGAATAAGTTAACATAACGGACAAATAACGGCC
AACTCTGACATTTTGGACGGTTATAGGGCTAAAAGTCGAAAACCTGGGGG
GCCATTAAGCAATTTTTAGATCTTTTGAAGAACTTGAAAATATTGGACGA
GAACCTAATTTATTGCCTCGAACATGAACCAAAGACTCCATGGAGAAAAT
GGAATTCATTCGTAGCCAATAAAAGACAACTACGTAATGTGGAGCCTTTT
TTTTCACCAGGTATACAGACACCCATCATTACACAAAACGAGAATGGACC
TTGTCCACTATTGGGCATTGCTAATGTTTTGATTTTAGCANCCAGCATTG
TCTATGTTTATGCCTAACGGTATATATACGGTCGTAGTATGGTAGAACAT
CGGGCTACGGTGTGCAAGGTCATGGATTCAATCCCTGTTCGGATCCTACC
AAAAACTTCGTACTTAGTACAAAAAAGGAATATGATGCTTCTCTACCTGA
AGCTCAGTAATTAACAGAAGGGTCAAAGGTGAAGCAATGCGGGGAGAAAG
AGTGGAGCCCTCTACCTACCTTCTGTTAGACAGTAACGAAAGAGGAGTCT
TCGGGTCGCCAACTTACATACTAGCTTAAATAAGAAGAATAAGTTAATAT
AACGGACAAATAACGGCCAACTCTGACATTTTGGACGGTTATAGGGCTAA
AAGTCGAAAACCTGGGGGGCCATTAAGCAATTTTTAGATCTTTTGAAGAA
CTTGAAAATATTGGACGAGAACCTAATTTATTGCCTCGAACATGAACCAA
AGACTCCATGGAGAAATTCAAAAATGGAATTCATTCGTAGCCAATCAAAA
GACAACTACGTAATGTGGAGCCTTTTTTTTCACCAGGTATACAGACACCC
ATCATTACACAAAACGAGAATGGACCTTGTCCACTATTGGGCATTGCTAA
TGTTTTGATTTTAGCAAGAAAGATTGAACTGCCACCGATGCAACAAATTA
TCAGTGGCAAACAGTTGATGGAGTACATAGGTCAGTATTGCAGCCATACA
GTATTACTTTGAATAAACATCCCCTTCTTTTAAACGCTCCCACCCCAATA
AACGCCCCATCTAAAAAACAGAGGAAATTAATAAATGCCCGAAGTAATAC
AGTACGCTTGCGTAATTGTCACTTAGAACACAGTTGAAATTTTAGCCTTA
AGCTTTTAAAGTCTGGGTTTAAAGCTTGATAGGATTTTTAACTTTTAGAG
GATAACTTCCCCGACCGATGGCCAAAGTCAATCGTTGTCATCGTGCAAGT
TAATGTCTATTTAGATATTGTATTTATGCCTGGTAGCTTCTGTAGTCAAT
ACAACACGCCTGGCTTGTATTTAATCTATATTCGCCAGTGTCTGTATTCG
TATCGGTTGATTAAAAGTAATTGATTAAAGAAAATTTGAAGAAAAAATCA
GTCTTAAACCAACCACTTATACGTATTCGCTCAATACACCTTTTCATAAA
TTGCGTCACGAACATCACTTGCCTCGTATTCAAACAATTACCATTATGAT
TATGTCCCTTGAGACATTAAATGATTTTTTTATGAATTGAAATTAGTTTT
CATAAAATCCGCTGGGAGTTAATCACCATATCAATAATTTCAAAACGAGG
CAAGTGATGTTCGTGACGTAATTTATGAAAAGGTCTATTTGATCTAAATT
TCTTCTTGTTGATGCTTTACAGGCGATTGTATTTTATCGAGTGCACCAGA
ACAAGATCGCGATAACGAAGAACTCATCCTCAACTATCAACAAAACATGC
AAGATGCGATCGATATCATGTACAAATTACAGACCGGAATAGATGTCAAC
GTCAAATTCACAGGTAACCAGGGGCCTTATTTAAGCCAGGCGAAAGGTGA
ATTTCGCCGGTCCAAGGCACGAAAAGAATTAGAATTTGTCGTTCGAAAAG
CTCGGCTCGCCGCCTCAAGTACATATTTACGCTAATGAATACACTGCACT
TGAATTCGCCGGCCTAGAATCTAGAAATCCCCATAGTTAATTTTTCATTC
GCAGCCTACCAAAAACAAAGAAAAGCCCCTGCAGGTAAGGCGTATTCGAT
GCCTGACTAATACTATCTGGTCAGGTATATGTCAATTGAAGTACTTAAGC
TTTCCACAAAGTACTCTTCATTCCCGGCAAAAGTTCATACCTGAAGTTTG
TGACATCCTGACGGTTGGTCCGATTTGTGGAATTTCGTATATCTTTTTAT
AATTGTTTTTTTTACCCACTAATACAATGCTTATGATTTCAGTGTAGTTA
TTTTCAGGCTTACAAAATTGGGCCTAGGGATGCGTTCACTGAATCTACCA
TTGGGCCTACCAGTTGTTAGAAAAAGACTGAAGTTAAGACAATTGCGATT
TGCAGTTTCGACTATTAATTCATGATATGCATCACTGCAATGTCTTCGAC
ATCACCCCATAGACCCAACGGCTGATTGGTTGTCTTTCCCTTGCTTGGAT
ACATCCGTGAGGTTAAGCGAAAAAAAGATTGGCTGTAAGTGACATAAAAC
CACTCAATCACTTGCAAACAATCAGCTGTTGGATGCCTGGTGTAATGTTA
GAAGACATTGCAATGGTGCATATCATGAATAGTCTATGTATCTGGTGCAA
TGTTTGCACCAGACTCAGTTCCGAACCCGCTTATGTGCATATTACTTTAA
GGTTTTGTTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTA
ATTCACAAGCTTTTTCACATTGGATTGACACATATGTGGAGCAAGATTGG
TCAGAAAGAGGAAAAGAAAAACGTTTTTTTTTTGCTTATATCAGCATAAT
GTAACAATAGACAAGATATAACAAGACACTGTCCTGATATGAAATATGTG
TCTGATATGAAACGGAAACACTTATGTAAAAATAAAATCTTTAAACTAAT
TCCCTACTCAATAAAACCAGCGATCGAATTTAAGACATTGCAATACAAGG
CTATAATTTCCTACCTAGATTTTATTTCAGGCTGGCGAAATTCTCCTCTC
GTTAAAACAGAAATTAAGCCTTGGTGTGTTCCTTTCAACAGTAACAATGA
TCAGAGCCTTTTTTAATTTCTTTGCTTTAAACCTTATCTTTTTACAGGTG
TGGTTGATTTTGAATTTACACGTGAATGTATCGTGTTCGACTTGCTGAAA
ATTGCTCTTTACCATGGCTGGATGGTGGACCCGCAAGACGAACCGGCTGT
CAAAGCGATCCACAATCTCAGCTACAATCAAATTGTCGAAAAAATGCTGA
CCGCTAAAGAAAGTATGGCTTGATTTATTATTTTCGGCCATGAGATTAAA
GTATCCTTATAATCCAGTGGAGTCTCTTTAACTCGAATCTCTACAACTCA
AATACAGTTGACGCTCTCTAATTCGATTTTCAAGGGGAATCGGATATCTA
TCGAATACGGGAGCGTATCGAATAGTAGGAAGTCTCCCTAATCCGATAAA
CACGAGGTAAATATCGAATTATAGAGCTGAGAAAAAAAATATAAGCGAGA
CTCGATTGGTTTGAACTCGAATCAGGACAAATGTCAAGTTCTTGCTGAAA
ACCTAAGTTCTTCGGAAGAAAACTTTCGATATTTGCCTGTTTTGAAAAGT
TTTGAGGAATCAAATTTCGAAATTATAATTCAAAGGCAAAAAAATCGGAA
ATTTGAATTTCGAACTCCGTCCTAAAGGCCTTTTTACACGCTAGAAATCG
AATAAGAGAGCGAAAAACCTCCAAGGGACTTCAAATTTTCATCGAAAACG
GGAGCTTCTCGAATAATAGAATGTCGAATAGTAGAGCGTAGTTTATGAGA
GTTTCTTAAGGAAATTTGACGGTGACTTTCAATTTGATCGAAAACGGGTT
AAAACCAGTGTTAATCTTGCCTTGCCGTAGGGTGGCTAGACTTTCTTACT
ACCGAAATCTTGAATCATCCCTTGCGGGAAGAAATGCTTCGTACAAAACG
GTCACGAGACTGCNCCTGGCGTATTTCTGGAATCATCCCTTGCGGGAAGA
AATGCTTCGTACAAAACACACAACGCTCTCGAGACTGCCCGCTTTACCAG
TTGAAGCAAATTTTGTGCCTACCCAGAGAGTTGTTTTTTTTTTGTTGAAA
AGTGGCAATAAAAAGTTTCCCCAGGAATGAGAAAGTCTTTTTTGACTTGG
GCTTGACTGAGACCATATGGCTCTATTGCCTCTACTTTTTGTATTGGGCT
CTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATATATTATTTGTTCA
TGATTTACCCCTGGACATTTAGATTTTTGACCCCCTGGACACGGGTTATA
CCCCTGGACAAACATCAAATCAACCCCGTGGACACAAAAAATTACCCCTG
GACATTTAGATTTTTGACCCCCTGGACACGGGTTATACCCCTGGACAAAC
ATCAAATCAACCCCGTGGACACAAAAAATTACCCCTGGACATTGGAATTT
ACCCCCTGGACATTGCAATTTTTTGGTATTTTTTCAATACCCCTGGACAA
TTCATCCTACACTCCCCATGAACGGACTTTTTCTGGAAGAGCCCATTGTA
ACGGTCTACGTATCATACGATTGCTAAGACTATGGAAGATTATTTGACAT
GAAACTGTCAATATTGAAAGAATAATTTCACTGCTTCTTCTATCATTATA
GGTACAGACGACAATGTCTTGAGTGAAGGACTGGCAATCGAAGACTTTTT
ATCACGCACGGCTAGTCAGCTAACGTACCATGGTTTGTGTGAACTGAACA
ACACTGTCCAAGAAGAAGAGCTATGCGTATTTTTCAGAAACAACCATTTC
TCAACTCTGTATAAACACAAAGGCGAACTTTTCTTGTTAGTCACCGATCA
AGGCTTTTTAACGGAACCGGCTGTGATCTGGGAAACGTTGGTGAACATTG
AAGGCGATGGACAGTTCGTCAATTCAGAATATCGATCTATACAGTTAGAT
AGTAATACGGTGCCACCTGCTCCGCAAGCTGCCGCTGGTGCCAACACCGC
AGTACACCCGTCTGAATCTAAGACTTCAACTGCCACAATGCAATCGAACT
TATCACAAGAAGACCAGGACTATTTAATTGCTTTATCACTGCAACAGCAG
GACGGAAGCAGCCCTGTGACGCAACCGAAATTTTCAAGTGACGATAGTTC
AAAGCAGCAGTCACAACAATCTCGTATTGACCAAGACCATGCTCTCGCTT
TACAGCTTCAAGAGGATGAGGACCGTAGAGCGCGCTTAGAACAACAACAA
CAACAGCAGCAGGGAGATCCCCAACAAGCTCAAGGGAATCCTCCACCACC
ACAACAACCACAAGGGAATCCTCTTCCTCAGCAGTCGCAACAACCGAGTT
CGAATCAAAGACCTCCTCAGGGGAATTCTGGAAGTCAAAGATTACAAGAA
AAGGACGACAAGTGCGTGATTATCTGAATTCTGGATGTAAAAGTTTAGAA
TGGTTGAATGATAATGGGCGCATGATAATCGGCTCTTCGAGCGCAAGGCT
AATCCATGTCAGTGAAATTGGTTGTAACAACTTCATGTAACAATGTTCAG
ATTTCTCATCCAGTGATTGGAGGAATTTATTTTTCGCTATCAAACACGAA
TGCGGGAGAAGAAATCACGTCCCATCATTTTTGAGATGACATCTCTTTAA
GTAAATTCTCTAAGGCTAAGGGTAGAAGTGCAGTTTTAAATCCTAAATGA
CCCGAATTTTGATTACCGATGCTGTCAATTTTCATTTGGTGCGTGTTTAA
CTTGGAGAACAAACAGTGTTATGCTTGGTGTATGGACATTTTGGTTTTGT
GAACAATTCTTGCTGCTTACTTTATGATGCATACAGTTCTTCCTTTGAAA
CGATTTGAAAGAAAATTTTTGTTATGTAACTTTCTTCTTGGCTTAACTTT
ATTGATATTTAATTTTGCACTGTTTGCAGTTCTAGTCAAGCTCCTAAATA
CACTTTTTCGACCGAATTATCCCTCTAAACTCGATCCAATCCTTTTTTAC
ACCTCTATTGTCTTTGGGTGCGAAAAAGACTGGGATGGCTTTAGGGTGGT
AAAACGAACACAAAATTGTCTGCGCGGCAATTGGCAGCTACGGTCGAAAA
GGTGTATTGTAGCGAAAGAATTTTTACTTTACCTTATCAATAGACGATAT
CGGCTTTCCGAATTCTCCCCGAATGATTACCCATGATGCATTGCGCAAAA
AAATTCGCGGACGATATTGACTTTCCGTGAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AACAACACTGTCCAAGAAGAAGAGCTATGCGTATTTTTCAGAAACAACCA
TTTCTCAACTCTGTATAAACACAAAGGCGAACTTTTCTTGTTAGTCACCG
ATCAAGGCTTTTTAACGGAACCGGCTGTGATCTGGGAAACGTTGGTGAAC
ATTGAAGGCGATGGACAGTTCGTCAATTCAGAATATCGATCTATACAGTT
AGATAGTAATACGGTGCCACCTGCTCCGCAAGCTGCCGCTGGTGCCAACA
CCGCAGTACACCCGTCTGAATCTAAGACTTCAACTGCCACAATGCAATCG
AACTTATCACAAGAAGACCAGGACTATTTAATTGCTTTATCACTGCAACA
GCAGGACGGAAGCAGCCCTGTGACGCAACCGAAATTTTCAAGTGACGATA
GTTCAAAGCAGCAGTCACAACAATCTCGTATTGACCAAGACCATGCTCTC
GCTTTACAGCTTCAAGAGGATGAGGACCGTAGAGCGCGCTTAGAACAACA
ACAACAACAGCAGCAGGGAGATCCCCAACAAGCTCAAGGGAATCCTCCAC
CACCACAACAACCACAAGGGAATCCTCTTCCTCAGCAGTCGCAACAACCG
AGTTCGAATCAAAGACCTCCTCAGGGGAATTCTGGAAGTCAAAGATTACA
AGAAAAGGACGACAAGTGCGTGATTATCTGAATTCTGGATGTAAAAGTTT
AGAATGGTTGAATGATAATGGGCGCATGATAATCGGCTCTTCGAGCGCAA
GGCTAATCCATGTCAGTGAAATTGGTTGTAACAACTTCATGTAACAATGT
TCAGATTTCTCATCCAGTGATTGGAGGAATTTATTTTTCGCTATCAAACA
CGAATGCGGGAGAAGAAATCACGTCCCATCATTTTTGAGATGACATCTCT
TTAAGTAAATTCTCTAAGGCTAAGGGTAGAAGTGCAGTTTTAAATCCTAA
ATGACCCGAATTTTGATTACCGATGCTGTCAATTTTCATTTGGTGCGTGT
TTAACTTGGAGAACAAACAGTGTTATGCTTGGTGTATGGACATTTTGGTT
TTGTGAACAATTCTTGCTGCTTACTTTATGATGCATACAGTTCTTCCTTT
GAAACGATTTGAAAGAAAATTTTTGTTATGTAACTTTCTTCTTGGCTTAA
CTTTATTGATATTTAATTTTGCACTGTTTGCAGTTCTAGTCAAGCTCCTA
AATACACTTTTTCGACCGAATTATCCCTCTAAACTCGATCCAATCCTTTT
TTACACCTCTATTGTCTTTGGGTGCGAAAAAGACTGGGATGGCTTTAGGG
TGGTAAAACGAACACAAAATTGTCTGCGCGGCAATTGGCAGCTACGGTCG
AAAAGGTGTATTGTAGCGAAAGAATTTTTACTTTACCTTATCAATAGACG
ATATCGGCTTTCCGAATTCTCCCCGAATGATTACCCATGATGCATTGCGC
AAAAA Coding sequence (CDS) from alignment at sc0000121:419767..430921- >TCONS_00011129 ID=TCONS_00011129|Name=TCONS_00011129|organism=Clytia hemisphaerica|type=CDS|length=1827bp|location=Sequence derived from alignment at sc0000121:419767..430921- (Clytia hemisphaerica)
ATGGAGAGCGATCAAAACAATGCAGAGGAGGTATCCACGGGTGGCAATGA
AAACATGGACTCTCCCCCGCAGGTCTCCACTGTGGAACCAACACAGGTTG
AAGAAACAAATGATAAATCTCCGCCACAGAGTGCGAGTGCAGAGAACAGT
GTAGAAGATCGAAATGATATGTCTATTGATGAAAGTTCAGTTTTGTCATC
TGATGGTGGAACAATGGACCAATCTATGGAAAGTCAGAAAACGAATACTT
CTATGGAAGAGGTGAGAGATTCGCCATCAAGCGATACAACTCAACCACAA
GGAGATGTTGTTGATGGAGAGAATGTGGAGAAGAATGATGAACCAGTTAA
AGAGTCGTCTAATGTTTCTCACACAGAAGATACAACCGAAACCACGGTTG
AAAATTCTAATGCGACCACTAAACTAGAACCTGCCAAACAAGATGACGAC
GACATCGTCCAAGTTAAGCCAGACCCGCCAACTGATGATTCGTCTATTGA
AACTTCTAATTCCGCGCATGCGTCCCAACAACAATCGATTTCTGCACCAC
GTGACCAACAGCAAGATTCGATTTATCACCTAAAGTGGTTCGATTGGAAA
GGTATACAGACACCCATCATTACACAAAACGAGAATGGACCTTGTCCACT
ATTGGGCATTGCTAATGTTTTGATTTTAGCAAGAAAGATTGAACTGCCAC
CGATGCAACAAATTATCAGTGGCAAACAGTTGATGGAGTACATAGGCGAT
TGTATTTTATCGAGTGCACCAGAACAAGATCGCGATAACGAAGAACTCAT
CCTCAACTATCAACAAAACATGCAAGATGCGATCGATATCATGTACAAAT
TACAGACCGGAATAGATGTCAACGTCAAATTCACAGGTGTGGTTGATTTT
GAATTTACACGTGAATGTATCGTGTTCGACTTGCTGAAAATTGCTCTTTA
CCATGGCTGGATGGTGGACCCGCAAGACGAACCGGCTGTCAAAGCGATCC
ACAATCTCAGCTACAATCAAATTGTCGAAAAAATGCTGACCGCTAAAGAA
AGTACAGACGACAATGTCTTGAGTGAAGGACTGGCAATCGAAGACTTTTT
ATCACGCACGGCTAGTCAGCTAACGTACCATGGTTTGTGTGAACTGAACA
ACACTGTCCAAGAAGAAGAGCTATGCGTATTTTTCAGAAACAACCATTTC
TCAACTCTGTATAAACACAAAGGCGAACTTTTCTTGTTAGTCACCGATCA
AGGCTTTTTAACGGAACCGGCTGTGATCTGGGAAACGTTGGTGAACATTG
AAGGCGATGGACAGTTCGTCAATTCAGAATATCGATCTATACAGTTAGAT
AGTAATACGGTGCCACCTGCTCCGCAAGCTGCCGCTGGTGCCAACACCGC
AGTACACCCGTCTGAATCTAAGACTTCAACTGCCACAATGCAATCGAACT
TATCACAAGAAGACCAGGACTATTTAATTGCTTTATCACTGCAACAGCAG
GACGGAAGCAGCCCTGTGACGCAACCGAAATTTTCAAGTGACGATAGTTC
AAAGCAGCAGTCACAACAATCTCGTATTGACCAAGACCATGCTCTCGCTT
TACAGCTTCAAGAGGATGAGGACCGTAGAGCGCGCTTAGAACAACAACAA
CAACAGCAGCAGGGAGATCCCCAACAAGCTCAAGGGAATCCTCCACCACC
ACAACAACCACAAGGGAATCCTCTTCCTCAGCAGTCGCAACAACCGAGTT
CGAATCAAAGACCTCCTCAGGGGAATTCTGGAAGTCAAAGATTACAAGAA
AAGGACGACAAGTGCGTGATTATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011129-exon-sc0000121-1575043694:430380..430921 | TCONS_00011129-exon-sc0000121-1575043694:430380..430921 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1575043694:428655..428892 | TCONS_00011129-exon-sc0000121-1575043694:428655..428892 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1575043694:427242..427385 | TCONS_00011129-exon-sc0000121-1575043694:427242..427385 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1575043694:426409..426549 | TCONS_00011129-exon-sc0000121-1575043694:426409..426549 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1575043694:424960..425124 | TCONS_00011129-exon-sc0000121-1575043694:424960..425124 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1575043694:422558..423570 | TCONS_00011129-exon-sc0000121-1575043694:422558..423570 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1575043694:419767..420297 | TCONS_00011129-exon-sc0000121-1575043694:419767..420297 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1510915933:430380..430921 | TCONS_00011129-exon-sc0000121-1510915933:430380..430921 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1510915933:428655..428892 | TCONS_00011129-exon-sc0000121-1510915933:428655..428892 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1510915933:427242..427385 | TCONS_00011129-exon-sc0000121-1510915933:427242..427385 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1510915933:426409..426549 | TCONS_00011129-exon-sc0000121-1510915933:426409..426549 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1510915933:424960..425124 | TCONS_00011129-exon-sc0000121-1510915933:424960..425124 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1510915933:422558..423570 | TCONS_00011129-exon-sc0000121-1510915933:422558..423570 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1510915933:419767..420297 | TCONS_00011129-exon-sc0000121-1510915933:419767..420297 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1491911889:430380..430921 | TCONS_00011129-exon-sc0000121-1491911889:430380..430921 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1491911889:428655..428892 | TCONS_00011129-exon-sc0000121-1491911889:428655..428892 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1491911889:427242..427385 | TCONS_00011129-exon-sc0000121-1491911889:427242..427385 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1491911889:426409..426549 | TCONS_00011129-exon-sc0000121-1491911889:426409..426549 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1491911889:424960..425124 | TCONS_00011129-exon-sc0000121-1491911889:424960..425124 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1491911889:422558..423570 | TCONS_00011129-exon-sc0000121-1491911889:422558..423570 | Clytia hemisphaerica | exon |
| TCONS_00011129-exon-sc0000121-1491911889:419767..420297 | TCONS_00011129-exon-sc0000121-1491911889:419767..420297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:419767..430921 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR033979 | MINDY_domain |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:1990380 | Lys48-specific deubiquitinase activity |
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:1990380 |
Lys48-specific deubiquitinase activity |
| molecular_function |
GO:0004843 |
thiol-dependent ubiquitin-specific protease activity |
Blast
BLAST of TCONS_00011129 vs. Swiss-Prot (Human)
Match: MINY1 (Ubiquitin carboxyl-terminal hydrolase MINDY-1 OS=Homo sapiens GN=MINDY1 PE=1 SV=2) HSP 1 Score: 342.428 bits (877), Expect = 9.241e-107 Identity = 168/326 (51.53%), Postives = 224/326 (68.71%), Query Frame = 3
Query: 726 PRDQQQDS-IYHLKWFDWKGIQTPIITQNENGPCPLLGIANVLILARKIELPPMQQIISGKQLMEYIGDCILSSAPEQDRDNEELILNYQQNMQDAIDIMYKLQTGIDVNVKFTGVVDFEFTRECIVFDLLKIALYHGWMVDPQDEPAVKAIHNLSYNQIVEKMLTAKESTDDNVLSEGLAIEDFLSRTASQLTYHGLCELNNTVQEEELCVFFRNNHFSTLYKHKGELFLLVTDQGFLTEPAVIWETLVNIEGDGQFVNSEYR-SIQLDSNTVXXXXXXXXXXXXXVHPSESKTSTATMQSNLSQEDQDYLIALSLQQQDGSSPV 1697
PR +Q + Y +KW WKG QTPIITQ+ NGPCPLL I N+L L K++LPP +++I+ +LM ++G+C+LS P++ +E L LN+QQN+ DA+ ++ KL TG+DVNV+FTGV DFE+T EC VFDLL I LYHGW+VDPQ AV+A+ LSYNQ+VE+++T K S+D N+++EGL E FL TA+QLTYHGLCEL +E EL VFFRNNHFST+ KHK L+LLVTDQGFL E V+WE+L N++GD F +S++ S L ++ + + ++ L Q DQDYLIALSLQQQ P+
Sbjct: 104 PRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEK--SEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKG------------------PGAEGGSGSPETQL-QVDQDYLIALSLQQQQPRGPL 408
The following BLAST results are available for this feature:
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