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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00011376-protein ID=TCONS_00011376-protein|Name=TCONS_00011376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1363bp MVVVEILLFVLSLSTQVLANAGDQILFSNRQDIRRFNFGLQNYTLILGGL EYVRSLDYDYKERKLFFISLHNSEKTMIQHTSFVDQNVKPKTIVDTMTQL DNDLKSLSVDWLTKKIYYTDLERKRVEVANYDGTSKRVIVSTGLIQPEGL ALFPQKGLMFITDWGSQKKIERFNMDGSNRKVIHNEPTGAWGRSITIDYE ASLIYWGDTKSKQIHAMTIDGKVVKKFELQHPPNYISVSSSMLYWSDGAL ISGISKSSNGNGTIHMKDFQISDLRVFESYRQPEVTTPCDVNNGNCSHLC LLKYGGYTCACPTGVSLKEDNKTCEDGMKKFLIIARKFNIRLLSFDADES VDFRLDIAKQNIQMVHGVIYDVEYKRVYWTNYGCAPDTQTTQLKDCSQSG SINSIFINGTGFKQFLTADIEEPDQLACDWVARNIYWTDGMLGRIEVARL DGTARKVIISKNLQRPRGIAIDAADAKIYWSDWGDNPKIERADMNGDNRE VLVDSRNIVEPNCIALDTQHRRLYWVDSKKYTVSYIDLYEATRKVRTIYE QCYHPFGITIFEKYAYWTDWSRKLYRMRITDKKNHKERIIIDVIKDVMGV SSVDSNLKYSLNPCYYKTNNCSHFCFVKPTKGRAMCECPSHMELGADERT CKVPSGYLVYSTNTEIHKTSIDTFNFDFRLLSEEMTNHAVFSIDFMREKI IWYVEETQGERSSIRSAYLNGTNVKTVMHVDSASYDIFTLDWISGNIYLA KSNYIEVVNHDGTFRKKLIYNENLMNPKCIMVDPRLRKLYWIQKRNGSYL YQSNLDGTEIEALVKMNPDICAVDFNTGVIYCLSNHRSLIAFDPVHRNMT VIRSYVTKWTSLAIFHDTIIFTDYSSNVIGQISTKPTNQEPAKDLLKVDQ PFGVQILHRDVQIGTNACFLKNGGCQQFCFAVTEKDVKCGCATHYALGED GQSCVDPQSFLIANQKNNFIRILFADGVPDHLLPVTNATNVDSIAFDYIR DKVYWLDKTTNQIHCINQDGMSGFSTVNLINKKSSKNDIQKPFDFALDPF SNSLFWTDAGRNTINFYNIHTGCRGIVFNHKDYSPRKIVVRPEIGRLFWT SADESKSTQTDLVSISFAGTDKNDLASLKRSKIVDLVIDDSSQLLYYLDT EKNKIVSMSLQGQLQFQTLIEAKFNPVSLATNEQDIFWGDNHMIYKVSKS ATNQNSVVFHGRYESLSEIIAVNTSRKNFVHPCINNNGGCSHICRISYEV SLSTKNTPPKAICGCPINYRLNENHKNCSIVERCQLFELFCKEDSRCIPS SKQCDGRKDCSDGQDEDEXYPAPNNVIAVRTALTDKTKTRVSVNSLKRLV RVTTDSVVQSSAV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000033 | LDLR class B repeat | SMART | SM00135 | LY_2 | coord: 355..412 e-value: 10.0 score: 9.9 coord: 97..136 e-value: 2.6E-6 score: 37.0 coord: 413..455 e-value: 9.3E-10 score: 48.4 coord: 1032..1074 e-value: 0.35 score: 19.9 coord: 181..224 e-value: 0.006 score: 25.8 coord: 981..1023 e-value: 1.8E-4 score: 30.9 coord: 545..584 e-value: 10.0 score: 10.0 coord: 767..810 e-value: 0.0034 score: 26.6 coord: 849..889 e-value: 80.0 score: 2.5 coord: 456..499 e-value: 1.3E-14 score: 64.5 coord: 1075..1125 e-value: 120.0 score: 1.0 coord: 727..765 e-value: 2.3 score: 15.4 coord: 500..543 e-value: 2.3E-4 score: 30.5 coord: 137..180 e-value: 7.3E-10 score: 48.8 coord: 43..88 e-value: 1.8 score: 16.3 coord: 678..724 e-value: 9.3 score: 10.3 |
IPR000033 | LDLR class B repeat | PFAM | PF00058 | Ldl_recept_b | coord: 477..517 e-value: 1.5E-8 score: 34.9 coord: 433..472 e-value: 5.3E-12 score: 45.9 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 787..814 score: 6.907 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 241..247 score: 5.376 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 745..786 score: 7.534 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 1001..1051 score: 8.88 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 433..475 score: 17.21 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 389..432 score: 5.376 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 114..156 score: 14.356 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 698..744 score: 6.258 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 1143..1185 score: 6.745 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 1095..1142 score: 5.886 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 202..221 score: 7.232 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 157..201 score: 9.414 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 1052..1094 score: 8.555 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 375..381 score: 5.144 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 476..520 score: 15.099 |
IPR000033 | LDLR class B repeat | PROSITE | PS51120 | LDLRB | coord: 521..564 score: 8.671 |
IPR000742 | EGF-like domain | SMART | SM00181 | egf_5 | coord: 288..325 e-value: 0.0014 score: 27.9 coord: 1232..1279 e-value: 2.3 score: 17.2 coord: 917..955 e-value: 18.0 score: 13.2 coord: 613..652 e-value: 13.0 score: 14.6 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SMART | SM00192 | LDLa_2 | coord: 1283..1322 e-value: 2.7E-7 score: 40.2 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PFAM | PF00057 | Ldl_recept_a | coord: 1283..1317 e-value: 3.6E-6 score: 27.0 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 1283..1320 score: 10.688 |
IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 1283..1318 |
None | No IPR available | GENE3D | 2.10.25.10 | | coord: 627..651 e-value: 1.1E-6 score: 28.1 coord: 930..955 e-value: 9.5E-7 score: 28.4 |
None | No IPR available | PFAM | PF14670 | FXa_inhibition | coord: 289..324 e-value: 5.2E-12 score: 45.7 |
None | No IPR available | GENE3D | 2.10.25.10 | | coord: 299..326 e-value: 3.1E-11 score: 43.0 |
None | No IPR available | GENE3D | 4.10.400.10 | | coord: 1284..1327 e-value: 2.9E-7 score: 30.1 |
None | No IPR available | CDD | cd00112 | LDLa | coord: 1284..1317 e-value: 1.34504E-7 score: 49.1274 |
None | No IPR available | SUPERFAMILY | 63825 | YWTD domain | coord: 25..249 |
None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 609..658 |
None | No IPR available | SUPERFAMILY | 63825 | YWTD domain | coord: 357..579 |
None | No IPR available | SUPERFAMILY | 63825 | YWTD domain | coord: 657..913 |
None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 913..964 |
None | No IPR available | SUPERFAMILY | 63825 | YWTD domain | coord: 962..1200 |
None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 288..326 |
IPR011042 | Six-bladed beta-propeller, TolB-like | GENE3D | 2.120.10.30 | | coord: 327..626 e-value: 2.9E-42 score: 144.5 coord: 17..298 e-value: 2.2E-38 score: 131.7 coord: 652..929 e-value: 2.5E-24 score: 85.6 |
IPR011042 | Six-bladed beta-propeller, TolB-like | GENE3D | 2.120.10.30 | | coord: 956..1283 e-value: 3.4E-34 score: 117.9 |
Blast
BLAST of TCONS_00011376-protein vs. Swiss-Prot (Human)
Match: LRP6 (Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2) HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0 Identity = 420/1336 (31.44%), Postives = 680/1336 (50.90%), Query Frame = 0
Query: 6 ILLFVLSLSTQVLANAGDQILFSNRQDIRRFNF--GLQNYTLILGGLEYVRSLDYDYKERKLFFISLHNSEKTMIQHTSFVDQNVKPKTIVDTMTQLDNDLKSLSVDWLTKKIYYTDLERKRVEVANYDGTSKRVIVSTGLIQPEGLALFPQKGLMFITDWGSQKKIERFNMDGSNRKVIHNEPTGAWGRSITIDYEASLIYWGDTKSKQIHAMTIDG---KVVKKFELQHPPNYISVSSSMLYWSDGALISGIS---KSSNGNGTIHMKDFQISDLRVFESYRQPEVTTPCDVNNGNCSHLCLLK--YGGYTCACPTGVSLKEDNKTCEDGMKKFLIIARKFNIRLLSFDADESVDFRLDIAKQNIQMVHGVIYDVEYKRVYWTNYGCAPDTQTTQLKDCSQSGSINSIFINGTGFKQFLTADIEEPDQLACDWVARNIYWTDGMLGRIEVARLDGTARKVIISKNLQRPRGIAIDAADAKIYWSDWGDNPKIERADMNGDNREVLVDSRNIVEPNCIALDTQHRRLYWVDSKKYTVSYIDLYEATRKVRTIYEQCYHPFGITIFEKYAYWTDWSRKLYRMRITDKKNHKERIIIDVIKDVMGVSSVDSNLKYSLNPCYYKTNNCSHFCFVKPTKGRAMCECPSHMELGADERTCKVPSGYLVYSTNTEIHKTSIDTFNFDFRLLSEEMTNHAVFSIDFMREKIIWYVEETQGERSSIRSAYLNGTNVKTVMHVDSASYDIFTLDWISGNIYLAK--SNYIEVVNHDGTFRKKLIYNENLMNPKCIMVDPRLRKLYWIQKRNGSYLYQSNLDGTEIEALVKMNPDI-----CAVDFNTGVIYCLSNHRSLI-AFDPVHRNMTVIRSYVTKWTSLAIFHDTIIFTDYSSNVIGQISTKPTNQEPAKDLLKVDQPFGVQILHRDVQIGTNACFLKNGGCQQFCFAVTEKDVKCGCATHYALGEDGQSCVDPQSFLIANQKNNFIRILFAD-GVPDHLLPVTNATNVDSIAFDYIRDKVYWLDKTTNQIHCINQDGMSGFSTVNLINKKSSKNDIQKPFDFALDPFSNSLFWTDAGRNTINFYNIHTGCRGIVFNHKDYSPRKIVVRPEIGRLFWTSADESKSTQTDLVSISFAGTDKNDLASLKRSKIVDLVIDDSSQLLYYLDTEKNKIVSMSLQGQLQFQTLIEAKFNPVSLATNEQDIFWGD--NHMIYKVSKSATNQNSVVFHGRYESLSEIIAVN--TSRKNFVHPCINNNGGCSHICRISYEVSLSTKNTPPKAICGCPINYRLNENHKNCSIVERC--QLFELFCKEDSRCIPSSKQCDGRKDCSDGQDE 1316
+L +L+ S VL A +L++NR+D+R + G +N T+++GGLE ++D+ + +++ + + I+ T F +V + D L+ DWL +K+Y+TD E R+EV+N DG+ ++V+ L QP +AL P G M+ TDWG KIER MDGS+R +I N W +T+DYE +YW D K IH +DG + V K L HP +++ +LYW+D + S ++ + G IH F D+ F RQP T PC ++NG CSHLCL+ Y CACPTGV L E+ KTC+DG + L++AR+ ++R +S D + D L + ++I+ + YD +YWT+ + +I FI+G+G + +TA I PD +A DWVARN+YWTD RIEV RL+GT RK++IS++L+ PR I +D +YW+DWG+ PKIERA ++G +R VLV++ ++ PN +ALD ++YW D+K + ++ R+V + ++ H FG T+ Y YWTDW R+ + K++ + +IID + D+MG+ + + + NPC + CSH C +P R C CP EL +D +TC VP +L++S +I + S++T N + + + + D +I W T +I A++NG+ ++ V+ + +DW+ N+Y A +N IEV DG R+ L++ ++L +P+ + +DP +YW + + ++ +DG+E LV P++ +D+ +Y +LI + + + N VI + L + D I +TD+S I + + K + Q +D + + H Q G N C NG C C AV CGC HY+L D ++C P +FL+ +QK+ R++ + PD +LP+ + NV +I +D + ++YW+D N I +DG GF+ V ++ S+N +P+D ++D +S ++WT N IN + G+V + PR +VV PE G +++T+ E +S + + ++ GT++ L SK + L +D L++ D++ +I S L G + PV L E ++W D MI K+ + + V R LS+I AV ++ HPC +NGGCSHIC + + + C CP++ L ++ +C C Q F F E CIP + +CDG +C D DE
Sbjct: 4 VLRSLLACSFCVLLRAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYW---SDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG----LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP-FALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL--EDIRHAIAIDYDPVEGYIYWTD---------------DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV-LVEDKIPHIFGFTLLGDYVYWTDWQRR--SIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLR--CACPIGFELISDMKTCIVPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYW----TDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSI-ERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV--VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE-RSPKIERAALD--GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKV-QARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTR---------CSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGEID-CIPVAWRCDGFTECEDHSDE 1282
The following BLAST results are available for this feature:
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