TCONS_00011376-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011376-protein
Unique NameTCONS_00011376-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1363

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011376-protein ID=TCONS_00011376-protein|Name=TCONS_00011376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1363bp
MVVVEILLFVLSLSTQVLANAGDQILFSNRQDIRRFNFGLQNYTLILGGL
EYVRSLDYDYKERKLFFISLHNSEKTMIQHTSFVDQNVKPKTIVDTMTQL
DNDLKSLSVDWLTKKIYYTDLERKRVEVANYDGTSKRVIVSTGLIQPEGL
ALFPQKGLMFITDWGSQKKIERFNMDGSNRKVIHNEPTGAWGRSITIDYE
ASLIYWGDTKSKQIHAMTIDGKVVKKFELQHPPNYISVSSSMLYWSDGAL
ISGISKSSNGNGTIHMKDFQISDLRVFESYRQPEVTTPCDVNNGNCSHLC
LLKYGGYTCACPTGVSLKEDNKTCEDGMKKFLIIARKFNIRLLSFDADES
VDFRLDIAKQNIQMVHGVIYDVEYKRVYWTNYGCAPDTQTTQLKDCSQSG
SINSIFINGTGFKQFLTADIEEPDQLACDWVARNIYWTDGMLGRIEVARL
DGTARKVIISKNLQRPRGIAIDAADAKIYWSDWGDNPKIERADMNGDNRE
VLVDSRNIVEPNCIALDTQHRRLYWVDSKKYTVSYIDLYEATRKVRTIYE
QCYHPFGITIFEKYAYWTDWSRKLYRMRITDKKNHKERIIIDVIKDVMGV
SSVDSNLKYSLNPCYYKTNNCSHFCFVKPTKGRAMCECPSHMELGADERT
CKVPSGYLVYSTNTEIHKTSIDTFNFDFRLLSEEMTNHAVFSIDFMREKI
IWYVEETQGERSSIRSAYLNGTNVKTVMHVDSASYDIFTLDWISGNIYLA
KSNYIEVVNHDGTFRKKLIYNENLMNPKCIMVDPRLRKLYWIQKRNGSYL
YQSNLDGTEIEALVKMNPDICAVDFNTGVIYCLSNHRSLIAFDPVHRNMT
VIRSYVTKWTSLAIFHDTIIFTDYSSNVIGQISTKPTNQEPAKDLLKVDQ
PFGVQILHRDVQIGTNACFLKNGGCQQFCFAVTEKDVKCGCATHYALGED
GQSCVDPQSFLIANQKNNFIRILFADGVPDHLLPVTNATNVDSIAFDYIR
DKVYWLDKTTNQIHCINQDGMSGFSTVNLINKKSSKNDIQKPFDFALDPF
SNSLFWTDAGRNTINFYNIHTGCRGIVFNHKDYSPRKIVVRPEIGRLFWT
SADESKSTQTDLVSISFAGTDKNDLASLKRSKIVDLVIDDSSQLLYYLDT
EKNKIVSMSLQGQLQFQTLIEAKFNPVSLATNEQDIFWGDNHMIYKVSKS
ATNQNSVVFHGRYESLSEIIAVNTSRKNFVHPCINNNGGCSHICRISYEV
SLSTKNTPPKAICGCPINYRLNENHKNCSIVERCQLFELFCKEDSRCIPS
SKQCDGRKDCSDGQDEDEXYPAPNNVIAVRTALTDKTKTRVSVNSLKRLV
RVTTDSVVQSSAV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006378XLOC_006378Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011376TCONS_00011376Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000033LDLR_classB_rpt
IPR000742EGF-like_dom
IPR002172LDrepeatLR_classA_rpt
IPR0110426-blade_b-propeller_TolB-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 355..412
e-value: 10.0
score: 9.9
coord: 97..136
e-value: 2.6E-6
score: 37.0
coord: 413..455
e-value: 9.3E-10
score: 48.4
coord: 1032..1074
e-value: 0.35
score: 19.9
coord: 181..224
e-value: 0.006
score: 25.8
coord: 981..1023
e-value: 1.8E-4
score: 30.9
coord: 545..584
e-value: 10.0
score: 10.0
coord: 767..810
e-value: 0.0034
score: 26.6
coord: 849..889
e-value: 80.0
score: 2.5
coord: 456..499
e-value: 1.3E-14
score: 64.5
coord: 1075..1125
e-value: 120.0
score: 1.0
coord: 727..765
e-value: 2.3
score: 15.4
coord: 500..543
e-value: 2.3E-4
score: 30.5
coord: 137..180
e-value: 7.3E-10
score: 48.8
coord: 43..88
e-value: 1.8
score: 16.3
coord: 678..724
e-value: 9.3
score: 10.3
IPR000033LDLR class B repeatPFAMPF00058Ldl_recept_bcoord: 477..517
e-value: 1.5E-8
score: 34.9
coord: 433..472
e-value: 5.3E-12
score: 45.9
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 787..814
score: 6.907
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 241..247
score: 5.376
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 745..786
score: 7.534
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1001..1051
score: 8.88
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 433..475
score: 17.21
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 389..432
score: 5.376
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 114..156
score: 14.356
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 698..744
score: 6.258
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1143..1185
score: 6.745
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1095..1142
score: 5.886
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 202..221
score: 7.232
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 157..201
score: 9.414
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 1052..1094
score: 8.555
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 375..381
score: 5.144
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 476..520
score: 15.099
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 521..564
score: 8.671
IPR000742EGF-like domainSMARTSM00181egf_5coord: 288..325
e-value: 0.0014
score: 27.9
coord: 1232..1279
e-value: 2.3
score: 17.2
coord: 917..955
e-value: 18.0
score: 13.2
coord: 613..652
e-value: 13.0
score: 14.6
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 1283..1322
e-value: 2.7E-7
score: 40.2
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 1283..1317
e-value: 3.6E-6
score: 27.0
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 1283..1320
score: 10.688
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 1283..1318
NoneNo IPR availableGENE3D2.10.25.10coord: 627..651
e-value: 1.1E-6
score: 28.1
coord: 930..955
e-value: 9.5E-7
score: 28.4
NoneNo IPR availablePFAMPF14670FXa_inhibitioncoord: 289..324
e-value: 5.2E-12
score: 45.7
NoneNo IPR availableGENE3D2.10.25.10coord: 299..326
e-value: 3.1E-11
score: 43.0
NoneNo IPR availableGENE3D4.10.400.10coord: 1284..1327
e-value: 2.9E-7
score: 30.1
NoneNo IPR availableCDDcd00112LDLacoord: 1284..1317
e-value: 1.34504E-7
score: 49.1274
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 25..249
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 609..658
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 357..579
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 657..913
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 913..964
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 962..1200
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 288..326
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 327..626
e-value: 2.9E-42
score: 144.5
coord: 17..298
e-value: 2.2E-38
score: 131.7
coord: 652..929
e-value: 2.5E-24
score: 85.6
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 956..1283
e-value: 3.4E-34
score: 117.9

Blast
BLAST of TCONS_00011376-protein vs. Swiss-Prot (Human)
Match: LRP6 (Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2)

HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 420/1336 (31.44%), Postives = 680/1336 (50.90%), Query Frame = 0
Query:    6 ILLFVLSLSTQVLANAGDQILFSNRQDIRRFNF--GLQNYTLILGGLEYVRSLDYDYKERKLFFISLHNSEKTMIQHTSFVDQNVKPKTIVDTMTQLDNDLKSLSVDWLTKKIYYTDLERKRVEVANYDGTSKRVIVSTGLIQPEGLALFPQKGLMFITDWGSQKKIERFNMDGSNRKVIHNEPTGAWGRSITIDYEASLIYWGDTKSKQIHAMTIDG---KVVKKFELQHPPNYISVSSSMLYWSDGALISGIS---KSSNGNGTIHMKDFQISDLRVFESYRQPEVTTPCDVNNGNCSHLCLLK--YGGYTCACPTGVSLKEDNKTCEDGMKKFLIIARKFNIRLLSFDADESVDFRLDIAKQNIQMVHGVIYDVEYKRVYWTNYGCAPDTQTTQLKDCSQSGSINSIFINGTGFKQFLTADIEEPDQLACDWVARNIYWTDGMLGRIEVARLDGTARKVIISKNLQRPRGIAIDAADAKIYWSDWGDNPKIERADMNGDNREVLVDSRNIVEPNCIALDTQHRRLYWVDSKKYTVSYIDLYEATRKVRTIYEQCYHPFGITIFEKYAYWTDWSRKLYRMRITDKKNHKERIIIDVIKDVMGVSSVDSNLKYSLNPCYYKTNNCSHFCFVKPTKGRAMCECPSHMELGADERTCKVPSGYLVYSTNTEIHKTSIDTFNFDFRLLSEEMTNHAVFSIDFMREKIIWYVEETQGERSSIRSAYLNGTNVKTVMHVDSASYDIFTLDWISGNIYLAK--SNYIEVVNHDGTFRKKLIYNENLMNPKCIMVDPRLRKLYWIQKRNGSYLYQSNLDGTEIEALVKMNPDI-----CAVDFNTGVIYCLSNHRSLI-AFDPVHRNMTVIRSYVTKWTSLAIFHDTIIFTDYSSNVIGQISTKPTNQEPAKDLLKVDQPFGVQILHRDVQIGTNACFLKNGGCQQFCFAVTEKDVKCGCATHYALGEDGQSCVDPQSFLIANQKNNFIRILFAD-GVPDHLLPVTNATNVDSIAFDYIRDKVYWLDKTTNQIHCINQDGMSGFSTVNLINKKSSKNDIQKPFDFALDPFSNSLFWTDAGRNTINFYNIHTGCRGIVFNHKDYSPRKIVVRPEIGRLFWTSADESKSTQTDLVSISFAGTDKNDLASLKRSKIVDLVIDDSSQLLYYLDTEKNKIVSMSLQGQLQFQTLIEAKFNPVSLATNEQDIFWGD--NHMIYKVSKSATNQNSVVFHGRYESLSEIIAVN--TSRKNFVHPCINNNGGCSHICRISYEVSLSTKNTPPKAICGCPINYRLNENHKNCSIVERC--QLFELFCKEDSRCIPSSKQCDGRKDCSDGQDE 1316
            +L  +L+ S  VL  A   +L++NR+D+R  +   G +N T+++GGLE   ++D+ +    +++    +  +  I+ T F         +V  +   D     L+ DWL +K+Y+TD E  R+EV+N DG+ ++V+    L QP  +AL P  G M+ TDWG   KIER  MDGS+R +I N     W   +T+DYE   +YW D K   IH   +DG   + V K  L HP   +++   +LYW+D +  S ++    +  G   IH   F   D+  F   RQP  T PC ++NG CSHLCL+      Y CACPTGV L E+ KTC+DG  + L++AR+ ++R +S D  +  D  L +  ++I+    + YD     +YWT+                +  +I   FI+G+G +  +TA I  PD +A DWVARN+YWTD    RIEV RL+GT RK++IS++L+ PR I +D     +YW+DWG+ PKIERA ++G +R VLV++ ++  PN +ALD    ++YW D+K   +  ++     R+V  + ++  H FG T+   Y YWTDW R+   +    K++ +  +IID + D+MG+ + + +     NPC  +   CSH C  +P   R  C CP   EL +D +TC VP  +L++S   +I + S++T N +  +    +   +    D    +I W    T     +I  A++NG+ ++ V+       +   +DW+  N+Y A   +N IEV   DG  R+ L++ ++L +P+ + +DP    +YW +      + ++ +DG+E   LV   P++       +D+    +Y      +LI + + +  N  VI   +     L  + D I +TD+S   I + + K + Q        +D    + + H   Q G N C   NG C   C AV      CGC  HY+L  D ++C  P +FL+ +QK+   R++  +   PD +LP+ +  NV +I +D +  ++YW+D   N I    +DG  GF+ V  ++   S+N   +P+D ++D +S  ++WT    N IN   +     G+V   +   PR +VV PE G +++T+  E +S + +  ++   GT++  L     SK + L +D     L++ D++  +I S  L G  +          PV L   E  ++W D    MI K+  +     + V   R   LS+I AV     ++   HPC  +NGGCSHIC +  + +           C CP++  L ++  +C     C  Q F  F  E   CIP + +CDG  +C D  DE
Sbjct:    4 VLRSLLACSFCVLLRAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYW---SDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG----LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP-FALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL--EDIRHAIAIDYDPVEGYIYWTD---------------DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV-LVEDKIPHIFGFTLLGDYVYWTDWQRR--SIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLR--CACPIGFELISDMKTCIVPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYW----TDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSI-ERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV--VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE-RSPKIERAALD--GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKV-QARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTR---------CSCPMHLVLLQDELSCGEPPTCSPQQFTCFTGEID-CIPVAWRCDGFTECEDHSDE 1282          
The following BLAST results are available for this feature:
BLAST of TCONS_00011376-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRP60.000e+031.44Low-density lipoprotein receptor-related protein 6... [more]
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