TCONS_00011460-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011460-protein
Unique NameTCONS_00011460-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011460-protein ID=TCONS_00011460-protein|Name=TCONS_00011460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MATAVTFKELSAKNTDVLNYELLPKINNFLLETLPESLKCFSCQNILQRP
QQLSCGHRVCLHCVEDVVNRGNRFCPEDGYEIEKETFPDRSAMKDIMLLS
CYCLRKNDGCDWFGVIMDLEQHHTKDCPYGDVFVCKFQQIGCRGKGQNIA
LEKHYQHDFVYHHTLLAAGMAATLNITKQPENLLTEEQIDSKLEELGRTD
QELMLKEHEIKKSELSQLKLNTFVNELYGKIEKVLTQKSHYEIVLDQHLE
KAQKLKGLDSRTADAKIATLQSTVDRIQSTYKSQKIDWQKMDMQSKICLS
TTNGEGYLWKMDQFKQRVLETIEYENSPKGDLFTPPLYTELYGHRFCIKV
NLGGGIEGSHISLYMVIMQSKLDEILDWPFPYIVKLTLINPNSKKNIEHL
LVPTPELPHFQQPLREQNMSIGFPRFVSHETLHADNFIIDDAIFIHIQTE
RVPFESN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006422XLOC_006422Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011460TCONS_00011460Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012227TNF_rcpt--assoc_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR002083MATH/TRAF_dom
IPR001841Znf_RING
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012227TNF receptor-associated factor TRAFPIRSFPIRSF015614TRAFcoord: 115..455
e-value: 2.6E-52
score: 176.1
coord: 8..133
e-value: 3.2E-17
score: 60.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 98..155
e-value: 5.9E-10
score: 38.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 30..97
e-value: 1.2E-9
score: 37.1
IPR008974TRAF-likeGENE3D2.60.210.10coord: 307..453
e-value: 2.2E-21
score: 76.4
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 307..447
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 40..76
e-value: 8.0E-5
score: 22.3
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 55..64
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 304..449
score: 10.777
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 40..78
score: 9.332
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 39..76
e-value: 9.40087E-4
score: 35.8844
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 31..89

Blast
[Close]
BLAST of TCONS_00011460-protein vs. Swiss-Prot (Human)
Match: TRAF2 (TNF receptor-associated factor 2 OS=Homo sapiens GN=TRAF2 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.028e-33
Identity = 124/503 (24.65%), Postives = 217/503 (43.14%), Query Frame = 0 
Query:   11 SAKNTDVLNYELL-PKINNFLLET-LPESLKCFSCQNILQRPQQLSCGHRVCLHCVEDVVNRGNRFCP--------EDGYEI--EKETFPDRSAMKDIMLLSCYCLRKNDGCDWFGVIMDLEQHHT-------KDCPYGDVFV------------CKFQQIGCR-GKGQNIALEKHYQHDFVYHHTLLAAGMAATLNITKQPENLLTEE-------QIDSKLEELG--RTDQELMLKEHEIK--KSELSQLKLNTFV-------------NELYGKIEKVLTQKSHYE---IVLDQHLEKAQKLKGLDSRT---ADAKIATLQSTVDRIQSTYKSQKIDWQKMDMQSKIC---LSTTNGEGYLWKMDQFKQRVLETIEYENSPKGDLFTPPLYTELYGHRFCIKV--NLGGGIEGSHISLYMVIMQSKLDEILDWPFPYIVKLTLINPNSKKNIEHLLVPTPELPHFQQPLREQNMSIGFPRFVSHETLHADN-FIIDDAIFI 445
            +A  T   + ELL P  +  LL T L     C +C+N+L+RP Q  CGHR C  C+  +++ G + C         E+G  I      FPD +A +++  L   C   +DGC W G + + E  H         +CP     V            C  + + CR  +      +    H+      L   G        K P     +        ++  +   +G   T +    +EHE++  +  L+ L L++ +             +EL  + E +  + + +E    VL++ +E+        SR       KI  L S V +++ +   +  D    D++ K+     ST +G  ++WK+  F ++  E +         +F+P  YT  YG++ C+++  N  G   G+H+SL+ V+M+   D +L WPF   V L L++ N+++++     P      FQ+P+ + N++ G P F     + A N ++ DDAIFI
Sbjct:    3 AASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVC--PSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKK----KIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWLREHLAML-LSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGLK--DLAMADLEQKVLEMEASTYDGV-FIWKISDFARKRQEAVAGRIPA---IFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFI 492
The following BLAST results are available for this feature:
BLAST of TCONS_00011460-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF24.028e-3324.65TNF receptor-associated factor 2 OS=Homo sapiens G... [more]
back to top