TCONS_00011460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011460
Unique NameTCONS_00011460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011460 ID=TCONS_00011460|Name=TCONS_00011460|organism=Clytia hemisphaerica|type=transcript|length=2057bp
CTCAagtcaaatgactttggaagttcggtgaaatggtggccgcaTTGCTG
Tctcatgttttgtcagatagtccaaagttagagcagttgatgttagtatt
tttttcaacaccagacttgtttttttatttagatttatATTATAACTAAT
AAAAATCTGAAATAACTTAAATATAAATGGCAACAGCTGTAACATTCAAG
GAGCTGAGTGCAAAAAATACAGATGTTTTGAATTATGAGCTACTTCCgaa
aatcaataactttttattGGAGACACTTCCAGAAAGTTTAAAGTGTTTTA
GCTgtcaaaatattcttcaaagacCTCAACAACTATCCTGTGGACATAGG
GTATGTTTACACTGTGTTGAAGATGTTGTCAATCGAGGCAATCGATTCTG
TCCTGAAGACGGGTATGAAATTGAGAAGGAAACATTCCCAGATAGATCTG
CAATGAAAGATATAATGCTTCTTAGTTGTTATTGTTTACGAAAAAATGAC
GGGTGTGACTGGTTTGGTGTCATTATGGATCTTGAACAACACCATACAAA
AGATTGCCCCTATGgagatgtttttgtttgtaagTTTCAACAGATTGGTT
GTAGAGGTAAAGGTCAGAATATAGCTTTGGAAAAGCATTACCAGCACGAT
TTTGTTTATCACCATACACTTTTGGCTGCTGGTATGGCTGCAACATTGAA
TATAACCAAACAACCTGAAAATCTTTTAACTGAGGAACAGATTGATAGTA
AACTTGAAGAATTGGGGAGAACAGATCAAGAACTGATGTTAAAAGAACAT
GAAATTAAGAAAAGTGAATTATCACAGTTAAAGCTGAATACATTTGTAAA
TGAACTATATGGTAAGATTGAGAAGGTGTTGACACAAAAATCacattatg
aaattgttcttgatCAACATTTAGAGAAAGCTCAAAAACTCAAAGGTTTG
GATTCTAGAACAGCTGATGCAAAAATAGCCACATTACAGAGTACAGTGGA
CCGCATACAAAGTACTTATAAAAGCCAAAAGATTGATTGGCAGAAAATGG
ATATGCAGTCTAAGATATGCTTATCAACAACAAATGGTGAAGGTTATCTG
TGGAAAATGGATCAGTTTAAACAACGCGTTTTGGAAACAATCGAATATGA
AAATTCTCCCAAGGGAGATCTGTTTACACCACCATTGTATACTGAATTAT
ATGGTCACCGGTTCTGTATCAAAGTCAATTTAGGAGGTGGTATTGAGGGA
TCACATATATCTTTATATATGGTTATCATGCAGTCAAAGTTAGATGAGAT
TCTAGACTGGCCTTTCCCTTATATTGTGAAACTAACATTAATAAATCCAA
ACAGTAAGAAAAATATTGAGCATTTATTGGTGCCGACTCCAGAGTTACCA
CACTTCCAACAGCCGCTACGTGAACAGAATATGTCGATTGGATTTCCACG
TTTTGTGAGTCATGAGACATTGCATGCTGATAATTTCATCATTGATGATG
CCATATTTATACATATACAGACTGAGCGTGTACCGTTTGAAAGTAACTAA
Aatgtatccagatataattggcagtggaaacaagaatgcctgtaactttt
gatagtcaaatacaattgtggattttttttttgcttgtttgagAGCATCA
AAAGCGccatatttgaatgtatttttggtttaaaaatttatgatttttag
tgGTTAAATTTACGATTTAAAAAATGACCTTTTTTTCTAGTTATGCTACA
ACGTTCAATTTGACACAAGTGGTGGTTCAGCCTTAGGTAaagaaggttgt
caaatttcaaggcaaacgcAGAAAagtgtgttatgatcgaaaaactgttt
tatcatcactacccccgtttttatgaaaaatttggagatttgatatttca
cagaaaactGCTAGCAAGGGGACGacggacttttctgtttgccttaaAAT
TTGACAATCTTCTTTACCTAAGGCCAACgtctggtgtaaaaatgaattca
accaaaaatacattcaaatatagcgcttttgattctcctaaacaagcaaa
aaaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00011460-protein

>TCONS_00011460-protein ID=TCONS_00011460-protein|Name=TCONS_00011460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MATAVTFKELSAKNTDVLNYELLPKINNFLLETLPESLKCFSCQNILQRP
QQLSCGHRVCLHCVEDVVNRGNRFCPEDGYEIEKETFPDRSAMKDIMLLS
CYCLRKNDGCDWFGVIMDLEQHHTKDCPYGDVFVCKFQQIGCRGKGQNIA
LEKHYQHDFVYHHTLLAAGMAATLNITKQPENLLTEEQIDSKLEELGRTD
QELMLKEHEIKKSELSQLKLNTFVNELYGKIEKVLTQKSHYEIVLDQHLE
KAQKLKGLDSRTADAKIATLQSTVDRIQSTYKSQKIDWQKMDMQSKICLS
TTNGEGYLWKMDQFKQRVLETIEYENSPKGDLFTPPLYTELYGHRFCIKV
NLGGGIEGSHISLYMVIMQSKLDEILDWPFPYIVKLTLINPNSKKNIEHL
LVPTPELPHFQQPLREQNMSIGFPRFVSHETLHADNFIIDDAIFIHIQTE
RVPFESN
Run BLAST on NCBI

transcript from alignment at sc0000128:436965..439961+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011460 ID=TCONS_00011460|Name=TCONS_00011460|organism=Clytia hemisphaerica|type=transcript|length=2997bp|location=Sequence derived from alignment at sc0000128:436965..439961+ (Clytia hemisphaerica)
CTCAagtcaaatgactttggaagttcggtgaaatggtggccgcaTTGCTG
Tctcatgttttgtcagatagtccaaagttagagcagttgatgttagtatt
tttttcaacaccagacttgtttttttatttagatttatATTATAACTAAT
AAAAATCTGAAATAACTTAAATATAAATGGCAACAGCTGTAACATTCAAG
GAGCTGAGTGCAAAAAATACAGATGTTTTGAATTATGAGCTACTTCCgaa
aatcaataactttttattGGAGACACTTCCAGAAAGTTTAAAGTGTTTTA
GCTgtcaaaatattcttcaaagacCTCAACAACTATCCTGTGGACATAGG
TAAGTCCATAATTTATATCCTTACACCATGAGCCTGCTAGGATTCCCTTG
CTAGAAAAATCGACaagcaggctagctctaaagttCTAAACCAGCATTTT
ATAAATTATGAAAACCAGattatgattcttcaatggggatcaaaactata
aagtgcacaaATTACAACTTTACAATAGTGCcacggatcatcagtggata
gtattcaattatcattatccctttattttcatttgtagaccttttgcaaa
aaaaaggaagaatagaaatgttttattttttactgctctattcacatact
gaatttgaaagatgttCTATGTGgcctttttttgcaaactttaaaaaatt
attttttttccgcttttgcaggactttagcttaagtgcttgcgtgtagca
tagggtacaaagtccaaatatattgtgtttcccgtaatttttgtatgaag
agttaggtctatactgacaCGCTGAGAACAATACCCTGACGTATCATCTC
CTTTGAAAAACTTCACTGGACTGGTATCTAGGAAAGACATTATTGTTTTG
AACTGGTATCTGAGAAAGACACTCAAGTTTTGAAGATACTGGAAACTCTA
AGTCCATTCCATTTGTTATCCAGCTCCTTTAAAATTTAATTCCAACTTCT
CAAATGCTAGATCATTGATATAGGGGAAGTTAACGGCGTTGTTTGACAAT
TGTAAGGATAAGATTTTGCTAAAACACTTTAACATTATGTGTTTATTGGC
AAAGACTTCGAATTTTACTGACAATCATTCTAAATTGAAAAGCCTTTTCA
TTCAATTAAAAACAGTATTCAAAATTGACTCAAAAAGCCTATACACCTAG
ATGAAGGGGAAttgaatttttagcaaaaagagATCCCTCCTGATTAATGG
ATTTGTACAGGAAACTTAATTTCTTTGCTTTATCTTTAGGGTATGTTTAC
ACTGTGTTGAAGATGTTGTCAATCGAGGCAATCGATTCTGTCCTGAAGAC
GGGTATGAAATTGAGAAGGAAACATTCCCAGATAGATCTGCAATGAAAGA
TATAATGCTTCTTAGTTGTTATTGTTTACGAAAAAATGACGGGTGTGACT
GGTTTGGTGTCATTATGGATCTTGAACAACACCATACAAAAGATTGCCCC
TATGgagatgtttttgtttgtaagTTTCAACAGATTGGTTGTAGAGGTAA
AGGTCAGAATATAGCTTTGGAAAAGCATTACCAGCACGATTTTGTTTATC
ACCATACACTTTTGGCTGCTGGTATGGCTGCAACATTGAATATAACCAAA
CAACCTGAAAATCTTTTAACTGAGGAACAGATTGATAGTAAACTTGAAGA
ATTGGGGAGAACAGATCAAGAACTGATGTTAAAAGAACATGAAATTAAGA
AAAGTGAATTATCACAGTTAAAGCTGAATACATTTGTAAATGAACTATAT
GGTAAGATTGAGAAGGTGTTGACACAAAAATCacattatgaaattgttct
tgatCAACATTTAGAGAAAGCTCAAAAACTCAAAGGTTTGGATTCTAGAA
CAGCTGATGCAAAAATAGCCACATTACAGAGTACAGTGGACCGCATACAA
AGTACTTATAAAAGCCAAAAGATTGATTGGCAGAAAATGGATATGCAGTC
TAAGATATGCTTATCAACAACAAATGGTGAAGGTTATCTGTGGAAAATGG
ATCAGTTTAAACAACGCGTTTTGGAAACAATCGAATATGAAAATTCTCCC
AAGGGAGATCTGTTTACACCACCATTGTATACTGAATTATATGGTCACCG
GTTCTGTATCAAAGTCAATTTAGGAGGTGGTATTGAGGGATCACATATAT
CTTTATATATGGTTATCATGCAGTCAAAGTTAGATGAGATTCTAGACTGG
CCTTTCCCTTATATTGTGAAACTAACATTAATAAATCCAAACAGTAAGAA
AAATATTGAGCATTTATTGGTGCCGACTCCAGAGTTACCACACTTCCAAC
AGCCGCTACGTGAACAGAATATGTCGATTGGATTTCCACGTTTTGTGAGT
CATGAGACATTGCATGCTGATAATTTCATCATTGATGATGCCATATTTAT
ACATATACAGACTGAGCGTGTACCGTTTGAAAGTAACTAAAatgtatcca
gatataattggcagtggaaacaagaatgcctgtaacttttgatagtcaaa
tacaattgtggattttttttttgcttgtttgagAGCATCAAAAGCGccat
atttgaatgtatttttggtttaaaaatttatgatttttagtgGTTAAATT
TACGATTTAAAAAATGACCTTTTTTTCTAGTTATGCTACAACGTTCAATT
TGACACAAGTGGTGGTTCAGCCTTAGGTAaagaaggttgtcaaatttcaa
ggcaaacgcAGAAAagtgtgttatgatcgaaaaactgttttatcatcact
acccccgtttttatgaaaaatttggagatttgatatttcacagaaaactG
CTAGCAAGGGGACGacggacttttctgtttgccttaaAATTTGACAATCT
TCTTTACCTAAGGCCAACgtctggtgtaaaaatgaattcaaccaaaaata
cattcaaatatagcgcttttgattctcctaaacaagcaaaaaaaaaa

Coding sequence (CDS) from alignment at sc0000128:436965..439961+

>TCONS_00011460 ID=TCONS_00011460|Name=TCONS_00011460|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at sc0000128:436965..439961+ (Clytia hemisphaerica)
ATGGCAACAGCTGTAACATTCAAGGAGCTGAGTGCAAAAAATACAGATGT
TTTGAATTATGAGCTACTTCCgaaaatcaataactttttattGGAGACAC
TTCCAGAAAGTTTAAAGTGTTTTAGCTgtcaaaatattcttcaaagacCT
CAACAACTATCCTGTGGACATAGGGTATGTTTACACTGTGTTGAAGATGT
TGTCAATCGAGGCAATCGATTCTGTCCTGAAGACGGGTATGAAATTGAGA
AGGAAACATTCCCAGATAGATCTGCAATGAAAGATATAATGCTTCTTAGT
TGTTATTGTTTACGAAAAAATGACGGGTGTGACTGGTTTGGTGTCATTAT
GGATCTTGAACAACACCATACAAAAGATTGCCCCTATGgagatgtttttg
tttgtaagTTTCAACAGATTGGTTGTAGAGGTAAAGGTCAGAATATAGCT
TTGGAAAAGCATTACCAGCACGATTTTGTTTATCACCATACACTTTTGGC
TGCTGGTATGGCTGCAACATTGAATATAACCAAACAACCTGAAAATCTTT
TAACTGAGGAACAGATTGATAGTAAACTTGAAGAATTGGGGAGAACAGAT
CAAGAACTGATGTTAAAAGAACATGAAATTAAGAAAAGTGAATTATCACA
GTTAAAGCTGAATACATTTGTAAATGAACTATATGGTAAGATTGAGAAGG
TGTTGACACAAAAATCacattatgaaattgttcttgatCAACATTTAGAG
AAAGCTCAAAAACTCAAAGGTTTGGATTCTAGAACAGCTGATGCAAAAAT
AGCCACATTACAGAGTACAGTGGACCGCATACAAAGTACTTATAAAAGCC
AAAAGATTGATTGGCAGAAAATGGATATGCAGTCTAAGATATGCTTATCA
ACAACAAATGGTGAAGGTTATCTGTGGAAAATGGATCAGTTTAAACAACG
CGTTTTGGAAACAATCGAATATGAAAATTCTCCCAAGGGAGATCTGTTTA
CACCACCATTGTATACTGAATTATATGGTCACCGGTTCTGTATCAAAGTC
AATTTAGGAGGTGGTATTGAGGGATCACATATATCTTTATATATGGTTAT
CATGCAGTCAAAGTTAGATGAGATTCTAGACTGGCCTTTCCCTTATATTG
TGAAACTAACATTAATAAATCCAAACAGTAAGAAAAATATTGAGCATTTA
TTGGTGCCGACTCCAGAGTTACCACACTTCCAACAGCCGCTACGTGAACA
GAATATGTCGATTGGATTTCCACGTTTTGTGAGTCATGAGACATTGCATG
CTGATAATTTCATCATTGATGATGCCATATTTATACATATACAGACTGAG
CGTGTACCGTTTGAAAGTAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006422XLOC_006422Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011460-proteinTCONS_00011460-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011460-exon-sc0000128-1491911889:436965..437313TCONS_00011460-exon-sc0000128-1491911889:436965..437313Clytia hemisphaericaexon
TCONS_00011460-exon-sc0000128-1510915933:436965..437313TCONS_00011460-exon-sc0000128-1510915933:436965..437313Clytia hemisphaericaexon
TCONS_00011460-exon-sc0000128-1575043694:436965..437313TCONS_00011460-exon-sc0000128-1575043694:436965..437313Clytia hemisphaericaexon
TCONS_00011460-exon-sc0000128-1491911889:438254..439961TCONS_00011460-exon-sc0000128-1491911889:438254..439961Clytia hemisphaericaexon
TCONS_00011460-exon-sc0000128-1510915933:438254..439961TCONS_00011460-exon-sc0000128-1510915933:438254..439961Clytia hemisphaericaexon
TCONS_00011460-exon-sc0000128-1575043694:438254..439961TCONS_00011460-exon-sc0000128-1575043694:438254..439961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:436965..439961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.228	11.9103	4.82866	2.8958	11.7029	8.61858	16.6811	17.7701	10.1206	13.6554	10.5484	8.17612	9.48452	8.34553	8.52891	9.36204	6.54184	8.14446	9.42004	12.5261	7.06038	8.08727	16.247	18.971	8.57199	10.457	18.4272	19.3422	15.6937	13.9734
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012227TNF_rcpt--assoc_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR002083MATH/TRAF_dom
IPR001841Znf_RING
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00011460 vs. Swiss-Prot (Human)
Match: TRAF2 (TNF receptor-associated factor 2 OS=Homo sapiens GN=TRAF2 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.917e-28
Identity = 116/483 (24.02%), Postives = 206/483 (42.65%), Query Frame = 3 
Query:  207 SAKNTDVLNYELL-PKINNFLLET-LPESLKCFSCQNILQRPQQLSCGHRVCLHCVEDVVNRGNRFCP--------EDGYEI--EKETFPDRSAMKDIMLLSCYCLRKNDGCDWFGVIMDLEQHHT-------KDCPYGDVFV------------CKFQQIGCR-GKGQNIALEKHYQHDFVYHHTLLAAGMAATLNITKQPENLLTEE-------QIDSKLEELG--RTDQELMLKEHEIK--KSELSQLKLNTFV-------------NELYGKIEKVLTQKSHYE---IVLDQHLEKAQKLKGLDSRT---ADAKIATLQSTVDRIQSTYKSQKIDWQKMDMQSKIC---LSTTNGEGYLWKMDQFKQRVLETIEYENSPKGDLFTPPLYTELYGHRFCIKV--NLGGGIEGSHISLYMVIMQSKLDEILDWPFPYIVKLTLINPNSKKNIEHLLVPTPELPHFQQPLREQNMSIGFPRF 1454
            +A  T   + ELL P  +  LL T L     C +C+N+L+RP Q  CGHR C  C+  +++ G + C         E+G  I      FPD +A +++  L   C   +DGC W G + + E  H         +CP     V            C  + + CR  +      +    H+      L   G        K P     +        ++  +   +G   T +    +EHE++  +  L+ L L++ +             +EL  + E +  + + +E    VL++ +E+        SR       KI  L S V +++ +   +  D    D++ K+     ST +G  ++WK+  F ++  E +         +F+P  YT  YG++ C+++  N  G   G+H+SL+ V+M+   D +L WPF   V L L++ N+++++     P      FQ+P+ + N++ G P F
Sbjct:    3 AASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVC--PSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKK----KIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWLREHLAML-LSSVLEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGLK--DLAMADLEQKVLEMEASTYDGV-FIWKISDFARKRQEAVAGRIPA---IFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 472
The following BLAST results are available for this feature:
BLAST of TCONS_00011460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF23.917e-2824.02TNF receptor-associated factor 2 OS=Homo sapiens G... [more]
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