TCONS_00011730-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011730-protein
Unique Name	TCONS_00011730-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	441

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011730-protein ID=TCONS_00011730-protein|Name=TCONS_00011730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
MELKQLLLILTTLCLLMSLADCHLQLCRGEVEHTFPKTESTHRKIIFRKS
SDFISNVFSYATINITSNSKFAINRSNKSSGYLSLLMSNHDASNNYVKDK
LSCFEDFNITLTLDEPSSIKFIVLPKRFDQISFLIFLFGCFLFVNAKSLS
RSMTFLYASCASVGVLASCLILLFICYRLVPYKRMMAFLMTVGSGMWLYF
LEHFQYILGSFIMEHPYHVTAYLFTSALLSIALLYYYGVPSNERALNLLQ
WSMQLIAVYLIYFSSYSKAFSITVVVILTIFQVISFVAIVSGLVKFCVPK
KYTYLMQPAPKHRFLSMEEYERQCKETTERELKELKEYCESPKCNSWKVV
SRLKDPKRFASFLESGDQFTNEEKDDYYIDQDNEDEEEEETLQRDSSFKK
RHMTTVSTSDDSIELEHYMNGHTLNQREWISDDERNESFLS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006593	XLOC_006593	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011730	TCONS_00011730	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019358	NEMP_fam

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 317..337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 383..411
IPR019358	NEMP family	PFAM	PF10225	NEMP	coord: 126..366 e-value: 1.4E-58 score: 198.5

Blast

[Close]

BLAST of TCONS_00011730-protein vs. Swiss-Prot (Human)
Match: NEMP1 (Nuclear envelope integral membrane protein 1 OS=Homo sapiens GN=NEMP1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.965e-34
Identity = 84/256 (32.81%), Postives = 135/256 (52.73%), Query Frame = 0

Query:  122 IVLPKRFDQISFLIFLFGCFLFVNAKSLSRSMTFLYASCASVGVLASCLILLFICYRLVPYKRMMAFLMTVGSGMWLYFLEHFQYILGSFIMEHPYHVTAYLFTSALLSIALLYYYGVPSNERALNLLQWSMQLIAVYLIY----FSSYSKAFSITVVVILTIFQVISFVAIVSGLVKFCVPKKYTYLMQPAPKHRFLSMEEYERQCKETTERELKELKEYCESPKCNSWKVVSRLKDPKRFASFLESGDQFTNEE 373
            +++ +RFD   FL+FL G  LF     LSRS  F Y++  +VG++AS LI++FI  + +P K  +  ++  G    LY ++     L      +  ++ +Y+ T   +S A+ Y YG   NER++NLL W++QL+ +  +Y        + A  I  +    +   I ++ I     K C   +     +P P  R L+ EEY  Q +  T + L+EL+E+C SP C++WK VSR++ PKRFA F+E     T  E
Sbjct:  153 VIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCR--KVCKGAE-----KPVPP-RLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNE 400

The following BLAST results are available for this feature:

BLAST of TCONS_00011730-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011730-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NEMP1	1.965e-34	32.81	Nuclear envelope integral membrane protein 1 OS=Ho...	[more]

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TCONS_00011730-protein (polypeptide) - C. hemisphaerica