TCONS_00011735-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011735-protein
Unique NameTCONS_00011735-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011735-protein ID=TCONS_00011735-protein|Name=TCONS_00011735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
RIQDGGIFNVDSGSDDSNDNNMSSPERGGDNNEQQGDNDGPHEEMQSTQS
QMKDLFGAESDASKDSSDSATSSDEGNAAEPKASSDVNFDEPKEENSDEE
GRDPPQQASSDSDSDMGIGRNKSSTGGGASAAPTTQDLFGEDVSSDEETQ
DKPSTSFRPDISPLSGDEDSMRFSERRIPSPSKDKEDEEEEDEGLSISIE
LPRCNISLGKELYFVKLPNFLSVDTKPFDSNYYEDISSDEDEILDEEGRA
RLKLKVENTIRWRYSKDKDGEEIKESNCRFVRWSDGSLSMHLGNEVFDVF
KMKVDGEQNHLFVQQGTGLQAQAVFKNKLSFRPHSTTSQTHRKMTQSIAD
RMNKAQKVKMMPAMEKDPESQRESALKKEDERLRAANRRESQQRRMREKS
HLKGLSSGYLNDNDDDDGYENSIAAIKADYKNKKRRPLDIYDDDEDEESE
DSAKEDRLRKAKQLNDDDEDDDGDEFDADTRRKRDELATRKKKAGRKIIE
SDEDSDAESD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006597XLOC_006597Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011735TCONS_00011735Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007149Leo1
Vocabulary: Cellular Component
TermDefinition
GO:0016593Cdc73/Paf1 complex
Vocabulary: Biological Process
TermDefinition
GO:0016570histone modification
GO:0006368transcription elongation from RNA polymerase II promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016570 histone modification
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
cellular_component GO:0016593 Cdc73/Paf1 complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007149Leo1-like proteinPFAMPF04004Leo1coord: 213..375
e-value: 2.0E-54
score: 183.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 434..510
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..417

Blast
[Close]
BLAST of TCONS_00011735-protein vs. Swiss-Prot (Human)
Match: LEO1 (RNA polymerase-associated protein LEO1 OS=Homo sapiens GN=LEO1 PE=1 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 3.811e-105
Identity = 185/342 (54.09%), Postives = 234/342 (68.42%), Query Frame = 0 
Query:  135 TQDLFG--EDVSSDEETQDKPSTSFRPDISPLSGDEDSMRFSERRIPSPSKDKEDEEEEDEGLSISIELPRCNISLGKELYFVKLPNFLSVDTKPFDSNYYEDISSDEDEILDEEGRARLKLKVENTIRWRYSKDKDGEEIKESNCRFVRWSDGSLSMHLGNEVFDVFKMKVDGEQNHLFVQQGTGLQAQAVFKNKLSFRPHSTTSQTHRKMTQSIADRMNKAQKVKMMPAMEKDPESQRESALKKEDERLRAANRRESQQRRMREKSHLKGLSSGYLN----DNDDDDGYENSIAAIKADYKNKKRRP-LDIYDDDEDEESEDSAKEDRLRKAKQLNDDDE 469
            T DLFG  +D+SS  + +DKP T  +P               E  +P   +D+++EE   E   I +E+P+ N  LG +LYFVKLPNFLSV+ +PFD  YYED   DE+ + DEEGR RLKLKVENTIRWR  +D++G EIKESN R V+WSDGS+S+HLGNEVFDV+K  + G+ NHLF++QGTGLQ QAVFK KL+FRPHST S THRKMT S+ADR +K QK++++P   +DPE QR   +KKE+ERLRA+ RRESQQRRMREK H +GLS+ YL     D +++     S+AAIK  YK   R     IY  D DE SE+  K  RL KAK+L  D+E
Sbjct:  311 TMDLFGGADDISSGSDGEDKPPTPGQP-------------VDENGLP---QDQQEEEPIPE-TRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEML-DEEGRTRLKLKVENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIREERARIYSSDSDEGSEED-KAQRLLKAKKLTSDEE 633
The following BLAST results are available for this feature:
BLAST of TCONS_00011735-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LEO13.811e-10554.09RNA polymerase-associated protein LEO1 OS=Homo sap... [more]
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