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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011735 ID=TCONS_00011735|Name=TCONS_00011735|organism=Clytia hemisphaerica|type=transcript|length=1838bpRun BLAST on NCBI protein sequence of TCONS_00011735-protein >TCONS_00011735-protein ID=TCONS_00011735-protein|Name=TCONS_00011735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp RIQDGGIFNVDSGSDDSNDNNMSSPERGGDNNEQQGDNDGPHEEMQSTQSRun BLAST on NCBI transcript from alignment at sc0000132:491315..499797+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011735 ID=TCONS_00011735|Name=TCONS_00011735|organism=Clytia hemisphaerica|type=transcript|length=8483bp|location=Sequence derived from alignment at sc0000132:491315..499797+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:491315..499797+ >TCONS_00011735 ID=TCONS_00011735|Name=TCONS_00011735|organism=Clytia hemisphaerica|type=CDS|length=16863bp|location=Sequence derived from alignment at sc0000132:491315..499797+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011735 vs. Swiss-Prot (Human)
Match: LEO1 (RNA polymerase-associated protein LEO1 OS=Homo sapiens GN=LEO1 PE=1 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 2.540e-85 Identity = 176/337 (52.23%), Postives = 223/337 (66.17%), Query Frame = 3
Query: 405 TQDLFG--EDVSSDEETQDKPSTSFRP-DISPLSGDEDSMRFSERRIPSPSXXXXXXXXXXXGLSISIELPRCNISLGKELYFVKLPNFLSVDTKPFXXXXXXXXXXXXXXXXXXXGRARLKLKVENTIRWRYSKDKDGEEIKESNCRFVRWSDGSLSMHLGNEVFDVFKMKVDGEQNHLFVQQGTGLQAQAVFKNKLSFRPHSTTSQTHRKMTQSIADRMNKAQKVKMMPAMEKDPESQRESALKKEDERLRAANRRESQQRRMREKSHLKGXXXXXXXXXXXXXXXEN----SIAAIKADYKNKKRRPLDIYXXXXXXXXXXXXXXXRLRKAKQL 1394
T DLFG +D+SS + +DKP T +P D + L D+ E IP I +E+P+ N LG +LYFVKLPNFLSV+ +PFD YYED DE+ + +E GR RLKLKVENTIRWR +D++G EIKESN R V+WSDGS+S+HLGNEVFDV+K + G+ NHLF++QGTGLQ QAVFK KL+FRPHST S THRKMT S+ADR +K QK++++P +DPE QR +KKE+ERLRA+ RRESQQRRMREK H +GLS+ YL + D+ E S+AAIK YK R + +E + K RL KAK+L
Sbjct: 311 TMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQ----QEEEPIPE--------------TRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEE-GRTRLKLKVENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIKKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKGGIREERARIYSSDSDEGSEEDKAQRLLKAKKL 628 The following BLAST results are available for this feature:
BLAST of TCONS_00011735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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