TCONS_00011876-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011876-protein
Unique NameTCONS_00011876-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011876-protein ID=TCONS_00011876-protein|Name=TCONS_00011876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=741bp
KVSNFDFDFDFEVSKILRTTKMAELNKDSKDIGSMETVFKESSPRTNKKD
KTKYQAFRSDDSLSSENEEIEPSNRLRRKIKKERTNTSFKVKIKKNMKKE
KKEKEKDKEKDKKDKKDKNKRKMKKGNSEEGGLDTTEYPLHGPVFGVPLE
VAVERSGLPDKIELPRVVRDCILFIEEKGLTTEGIYRLSGVKSKVDHLKS
LYNEGRPVVLDDCDPNTVASLLKLYLRELPSSILTTRLNPIFDSFINHED
GDEQVFQFLKLLNDLPCPNRTLLQWMFTHFIHIIEQSAETKMNIQNLSIV
FSPTMKITHGVLNIFFEHSQVFFPGVELIKFVPVPETKDEDENGFPTTIE
GLQERLKENETVLAELHERVNQGDNSQDEELWERQRQATQIKRKIKLLKK
AEKEKEKQAEAARQAQAAAEEKHTQQQQQQQQQQQTTTVEVQQALEVDKP
TKQVSDSPKTRPKVLTLAEQAKQQNNAGSQQDIPQKLDPQAQAPTSTAKQ
QQKIETQQPVAGPIQTLIAAPPPIQRRKNIPPKVSAAPAAQIPPPTTQLP
RQNQQQYSTNSLPRRNRSSQSSNENLTEPKQQQAQQTQQKAEDVVLMDDE
LRVMLLEEQKLLIENEEMFNVSELLRKKIQVERREIESLKDKLQECIEHK
EKDADSDSNSSFSSSSSDSSASDQEEDNAHDQESDEEDILQLEMILNDLE
KENQKLEIEGNELIQKIITERTLCSQIRTDVRLQEMKLSVR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006666XLOC_006666Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011876TCONS_00011876Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR011990TPR-like_helical_dom
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 622..653
NoneNo IPR availableCOILSCoilCoilcoord: 682..716
NoneNo IPR availableCOILSCoilCoilcoord: 349..369
NoneNo IPR availableCOILSCoilCoilcoord: 90..121
NoneNo IPR availableCOILSCoilCoilcoord: 384..435
NoneNo IPR availableGENE3D1.10.555.10coord: 35..295
e-value: 1.0E-59
score: 201.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 472..592
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 650..686
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 404..433
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..137
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 162..340
e-value: 1.0E-40
score: 151.3
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 165..305
e-value: 1.0E-38
score: 132.4
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 147..360
score: 35.821
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 296..449
e-value: 7.4E-5
score: 21.8
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 141..323

Blast
[Close]
BLAST of TCONS_00011876-protein vs. Swiss-Prot (Human)
Match: RBP1 (RalA-binding protein 1 OS=Homo sapiens GN=RALBP1 PE=1 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 8.796e-63
Identity = 119/273 (43.59%), Postives = 169/273 (61.90%), Query Frame = 0 
Query:  143 PVFGVPLEVAVERSGLPDKIELPRVVRDCILFIEEKGLTTEGIYRLSGVKSKVDHLKSLYNEGRPVVLDDCDPNTVASLLKLYLRELPSSILTTRLNPIFDSFINHEDGDEQVFQFLKLLNDLPCPNRTLLQWMFTHFIHIIEQSAETKMNIQNLSIVFSPTMKITHGVLNIFFEHSQVFFPGVELIKFV-PVPETKDEDENGFPTTIEGLQERLKENETVLAELHERVNQG--DNSQDEELWERQRQATQIKRKIKLLKKAEKEKEKQAEAA 412
            P+FG+PL  AVER+ + D I LP V R+CI ++E+ G+  EGIYR+SG+KSKVD LK+ Y+      L+D +PNTVASLLK YLR+LP ++LT  L P F+         E+V +F +LL +LP  N  L+ W+  H  H+I +  ETKMNIQN+SIV SPT++I++ VL +FF H Q  F  V L + + P+  +        P T  G++E ++  E +L  LH  +  G  D S++E LWE QR  T +KRK++  K+ E E +   E A
Sbjct:  188 PIFGIPLADAVERTMMYDGIRLPAVFRECIDYVEKYGMKCEGIYRVSGIKSKVDELKAAYDREESTNLEDYEPNTVASLLKQYLRDLPENLLTKELMPRFEEACGRTTETEKVQEFQRLLKELPECNYLLISWLIVHMDHVIAKELETKMNIQNISIVLSPTVQISNRVLYVFFTHVQELFGNVVLKQVMKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEVQRILTALKRKLREAKRQECETKIAQEIA 460
The following BLAST results are available for this feature:
BLAST of TCONS_00011876-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBP18.796e-6343.59RalA-binding protein 1 OS=Homo sapiens GN=RALBP1 P... [more]
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