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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011876 ID=TCONS_00011876|Name=TCONS_00011876|organism=Clytia hemisphaerica|type=transcript|length=3377bpRun BLAST on NCBI protein sequence of TCONS_00011876-protein >TCONS_00011876-protein ID=TCONS_00011876-protein|Name=TCONS_00011876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=741bp KVSNFDFDFDFEVSKILRTTKMAELNKDSKDIGSMETVFKESSPRTNKKDRun BLAST on NCBI transcript from alignment at sc0000133:363277..398436- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011876 ID=TCONS_00011876|Name=TCONS_00011876|organism=Clytia hemisphaerica|type=transcript|length=35160bp|location=Sequence derived from alignment at sc0000133:363277..398436- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000133:363277..398436- >TCONS_00011876 ID=TCONS_00011876|Name=TCONS_00011876|organism=Clytia hemisphaerica|type=CDS|length=35616bp|location=Sequence derived from alignment at sc0000133:363277..398436- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011876 vs. Swiss-Prot (Human)
Match: RBP1 (RalA-binding protein 1 OS=Homo sapiens GN=RALBP1 PE=1 SV=3) HSP 1 Score: 209.534 bits (532), Expect = 1.384e-56 Identity = 111/250 (44.40%), Postives = 156/250 (62.40%), Query Frame = 1
Query: 427 PVFGVPLEVAVERSGLPDKIELPRVVRDCILFIEEKGLTTEGIYRLSGVKSKVDHLKSLYNEGRPVVLDDCDPNTVASLLKLYLRELPSSILTTRLNPIFDSFINHEDGDEQVFQFLKLLNDLPCPNRTLLQWMFTHFIHIIEQSAETKMNIQNLSIVFSPTMKITHGVLNIFFEHSQVFFPGVELIKFV-PVPETKDEDENGFPTTIEGLQERLKENETVLAELHERVNQG--DNSQDEELWERQRQAT 1167
P+FG+PL AVER+ + D I LP V R+CI ++E+ G+ EGIYR+SG+KSKVD LK+ Y+ L+D +PNTVASLLK YLR+LP ++LT L P F+ E+V +F +LL +LP N L+ W+ H H+I + ETKMNIQN+SIV SPT++I++ VL +FF H Q F V L + + P+ + P T G++E ++ E +L LH + G D S++E LWE QR T
Sbjct: 188 PIFGIPLADAVERTMMYDGIRLPAVFRECIDYVEKYGMKCEGIYRVSGIKSKVDELKAAYDREESTNLEDYEPNTVASLLKQYLRDLPENLLTKELMPRFEEACGRTTETEKVQEFQRLLKELPECNYLLISWLIVHMDHVIAKELETKMNIQNISIVLSPTVQISNRVLYVFFTHVQELFGNVVLKQVMKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEVQRILT 437 The following BLAST results are available for this feature:
BLAST of TCONS_00011876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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