TCONS_00012028-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012028-protein
Unique NameTCONS_00012028-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012028-protein ID=TCONS_00012028-protein|Name=TCONS_00012028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp
MPELQKLQQLKDDQGELSSADEKRFKTLKSSAEKELLQHADVICTTCIGA
GDPRLRMAKLRFRCVLIDESTQATEPECMVPIVHGTKQLILVGDHCQLGP
VVMCKKAASAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSEFPSNLFYD
GTLQNGVTVGERSQTDVDFPWPVADKPMFFYATTGQEEISSSGTSYLNRT
EAATVEKIATRFLRAGIKPEQMGIITPYEGQRAYIVSYMQFSGSLHATLY
QSIEVASVDAFQGREKDFIIMSCARSNEHQGIGFLKDPRRLNVALTRSKY
GLIIVGNPKVLSKQPLWNHLLNDYKEKRVLVEGPLNNLKESVIQFSKPRK
LVNRSNPGGRFMSNTTFDAREALIAPGMYANRPVRPHVDPVMDSYYRTHD
RMNFFPPGPDXVMDSYYRTHDRMNFFPPGPDQARNAFAANIPIPVGMFMS
PMPPPAAYQFNHQMVRPGQHRQRMPMNNKGNHNKGGGHYSSNRPSAGSNS
NNANQDLSQGPLSQGPLSQGPPLTQGGMSQNMPPLSQPLSQPELSQDSYL
GDDFQLKSQADQVLSQDSSYQGDRGGYHPFSSQAEYSQPMYNSQY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006760XLOC_006760Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012028TCONS_00012028Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 4..140
e-value: 4.9E-18
score: 64.7
NoneNo IPR availablePFAMPF13086AAA_11coord: 5..103
e-value: 5.0E-28
score: 98.5
NoneNo IPR availablePFAMPF13087AAA_12coord: 112..308
e-value: 1.1E-58
score: 198.0
NoneNo IPR availableGENE3D3.40.50.300coord: 141..330
e-value: 4.6E-34
score: 116.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 31..330

Blast
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BLAST of TCONS_00012028-protein vs. Swiss-Prot (Human)
Match: RENT1 (Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2)

HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 375/582 (64.43%), Postives = 429/582 (73.71%), Query Frame = 0 
Query:    1 MPELQKLQQLKDDQGELSSADEKRFKTLKSSAEKELLQHADVICTTCIGAGDPRLRMAKLRFRCVLIDESTQATEPECMVPIVHGTKQLILVGDHCQLGPVVMCKKAASAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSEFPSNLFYDGTLQNGVTVGERSQTDVDFPWPVADKPMFFYATTGQEEISSSGTSYLNRTEAATVEKIATRFLRAGIKPEQMGIITPYEGQRAYIVSYMQFSGSLHATLYQSIEVASVDAFQGREKDFIIMSCARSNEHQGIGFLKDPRRLNVALTRSKYGLIIVGNPKVLSKQPLWNHLLNDYKEKRVLVEGPLNNLKESVIQFSKPRKLVNRSNPGGRFMSNTTFDAREALIAPGMYANRPV--RPHVDPVMDSYYRTHDRMNFFPPGPDXVMDSYYRTHDRMNFFPPGPDQARNAFAANIPIPVGMFMSPMPPPAAYQFNHQMVRPGQHRQRMPMNNKGNHNKGGGHYSSNRPSAGSNSNNANQDLSQGPLSQGPLSQGPPLTQGGMSQNMPP-LSQP-LSQPELSQDSYLGDDFQLKSQADQVLSQDSSYQGDRGGYH 578
            MPELQKLQQLKD+ GELSSADEKR++ LK +AE+ELL +ADVIC TC+GAGDPRL  AK++FR +LIDESTQATEPECMVP+V G KQLILVGDHCQLGPVVMCKKAA AGLSQSLFERLVVLGIRPIRLQVQYRMHPALS FPSN+FY+G+LQNGVT  +R +   DF WP  DKPMFFY T GQEEI+SSGTSYLNRTEAA VEKI T+ L+AG KP+Q+GIITPYEGQR+Y+V YMQFSGSLH  LYQ +E+ASVDAFQGREKDFII+SC R+NEHQGIGFL DPRRLNVALTR++YG+IIVGNPK LSKQPLWNHLLN YKE++VLVEGPLNNL+ES++QFSKPRKLVN  NPG RFM+   +DAREA+I PG   +R    RP        Y++THD++     GP  V                         A NIPIP  + M PMPPP  +    Q   P   R       KG   +GG   +       S +N  N   SQ   SQ P SQG  LTQG +S + P  +SQP LSQPELSQDSYLGD+F  KSQ D  LSQDS+YQG+R   H
Sbjct:  582 MPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRL--AKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAII-PGSVYDRSSQGRPS-----SMYFQTHDQIGMISAGPSHVA------------------------AMNIPIPFNLVMPPMPPPGYF---GQANGPAAGRG----TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQ-PFSQG-ALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEF--KSQIDVALSQDSTYQGERAYQH 1120
The following BLAST results are available for this feature:
BLAST of TCONS_00012028-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RENT10.000e+064.43Regulator of nonsense transcripts 1 OS=Homo sapien... [more]
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