TCONS_00012164-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012164-protein
Unique Name	TCONS_00012164-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	628

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012164-protein ID=TCONS_00012164-protein|Name=TCONS_00012164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=628bp
MNFTTWYKEICTELTKSGQLKQLENEFVGQKDDFGRVSVLLSKDVFFKRL
IKESFNDKNNKQSELYRTTGNKLYSAASYQSALKAYTRAIKLAEPNTSYA
SLAYANRSAVLFALKNYKLCQIDVGLSFENGYPDELHFKLYERNGKCFFE
QCFYQDAANSYKACLNSLKTANLSKKQLKEKQDSIESLISNCPFEDDQNT
ENLESMLYNSLYNPLTPVIDDKNSVYLSASQSFSIKSTQSQGRYAIADRD
IKAGEIIIAEKPYALQCLSESFETHCYQCLTRFIVGYPCQCCSTVLYCSS
ECQLLSWKSSHQYECKYLQMLINDDIGLGHLAVKVILKNNLEELRNFKSI
YTGRENDSGLNDQGVYDPQDYFCLYSLVGNSESRKLSDLFKRSIMAVFLC
RILQNSGYLPSNSSEEDLVIVAGHLLKQIQMLPCNAHEISEAQLTGDDLA
SNELKEIGSAAYTTLSLLNHSCDPSVVRHCYKDVCVVRALKHISKGQEII
DNYGFLYAVEEKHERQLHLLDQYYFKCQCLPCNENWPLYSELVDDLPVFK
DLNDLEVVTYFSENWQMKFQDAMESVLKGQDIAKHQEFLLNYLDLLTCKA
KLPTIHVNNCQEIVKLCFSLSANFAKLK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006847	XLOC_006847	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012164	TCONS_00012164	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002893	Znf_MYND
IPR001214	SET_dom
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 276..315 e-value: 9.4E-5 score: 22.3
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 276..315 score: 10.825
None	No IPR available	GENE3D	3.90.1410.10		coord: 153..525 e-value: 1.4E-40 score: 138.8
None	No IPR available	GENE3D	1.10.150.160		coord: 55..123 e-value: 1.1E-7 score: 31.3
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 272..319
None	No IPR available	SUPERFAMILY	82199	SET domain	coord: 233..277 coord: 451..529
IPR001214	SET domain	PFAM	PF00856	SET	coord: 242..504 e-value: 6.6E-9 score: 36.3
IPR001214	SET domain	PROSITE	PS50280	SET	coord: 231..504 score: 11.095
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 63..96 score: 9.261
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 63..96 score: 9.293
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 58..167

Blast

[Close]

BLAST of TCONS_00012164-protein vs. Swiss-Prot (Human)
Match: SMYD4 (SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 4.100e-43
Identity = 149/575 (25.91%), Postives = 241/575 (41.91%), Query Frame = 0

Query:   31 KDDFGRVSVLLSKD--VFFKRLIKESFNDKNNKQSELYRTTGNKLYSAASYQSALKAYTRAIKLAEPNTSYASLAYANRSAVLFALKNYKLCQIDVGLSFENGYPDELHFKLYERNGKCFFEQCFYQDAANSYKAC-LNSLKTANLSKKQLKEKQDSIESLISNCPFEDDQNTENLESMLYNSLYNPLTPVIDDKNSVYLSASQSFSIKSTQSQGRYAIADRDIKAGEIII-----------AEKPYALQCLSESFET-------HCYQCLTRFIVGYPCQCCSTVLYCSSECQLLSWKSSHQYECKYLQMLINDDIGLGHLAVKVILKNNLEELRNF----------KSIYTGREND-----------------------SGLNDQGVYDPQDYFCLYSLVGNSESRKLSDLFKRSIMAVFLCRILQ-------------NSGYLPSNSSEE---DLVIVAGHLLKQIQMLPCNAHEISEAQLTGDD---LASNELKEIGSAAYTTLSLLNHSCDPSVVRHCYKDVCVVRALKHISKGQEIIDNYGFLYAVEEKHERQLHLLDQYYFKCQCLPC 532
            +D F   S LL  +  +F KRL K     K++     YR  GNK +    Y  A   Y++ +  + PNT   SL +ANRSA LF L  Y+ C  D+  +  +GYP+ L  K+  R  +C       Q+A+ +      N   T  L+    +  Q ++  L      E D  TE+  + L  +L +     + ++N    +AS S  +     +GR  +A +DI  GE+++            E P     L   ++T       +C++CL   +   PC  CS   YCS EC   +W+  H+ EC    +L+   +   H+A+++ L    E++R            K I     N+                        G +  G Y+  +Y  +++L+ ++E+      F  ++    LCR L+             NS  L +  + E   D+ I    +L+ +  L CNA  ++  Q TG     +  +    + +  +  +SLLNHSC P+        V  +RA + I KGQEI+  YG   +     ERQ  L  QY+F C C  C
Sbjct:   34 RDIFLHSSSLLQPEDELFLKRLSKGYLVGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNLHRLKMKMQ-EKDSLTESFPAALAKTLED---AALREENEQLSNASSSIGLCVDPLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGV-FCHIALRLTLLVGFEDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYE-NNYNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPAC 602

The following BLAST results are available for this feature:

BLAST of TCONS_00012164-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012164-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMYD4	4.100e-43	25.91	SET and MYND domain-containing protein 4 OS=Homo s...	[more]

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TCONS_00012164-protein (polypeptide) - C. hemisphaerica