TCONS_00012607-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012607-protein
Unique NameTCONS_00012607-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012607-protein ID=TCONS_00012607-protein|Name=TCONS_00012607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MGVLLQAKHKNKPVTDSNDITLNVNGHKRRNSYEGRGDGPGEDFLDMLLK
SQGSRLDDQRVDFPKQRVSSTNGTRPSKTKSSTKNSKKNSSKKQSAKPEH
SKEGFMDLVARLQGDRMDEQRCSLPELPGLVTEAKKKLIENQKQQQQQKP
NQEVPDDAFLDMLMRCQASRINDQRVEFPPIPRGPTVPDEDFFNLIARLQ
SKRIDTQRVSFDTRKYSC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007076XLOC_007076Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012607TCONS_00012607Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003109GoLoco_motif
Vocabulary: Molecular Function
TermDefinition
GO:0030695GTPase regulator activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030695 GTPase regulator activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003109GoLoco motifSMARTSM00390LGN_4coord: 102..124
e-value: 1.9E-7
score: 40.7
coord: 189..211
e-value: 2.9E-6
score: 36.8
coord: 41..63
e-value: 1.7E-8
score: 44.2
coord: 156..178
e-value: 5.5E-6
score: 35.9
IPR003109GoLoco motifPFAMPF02188GoLococoord: 190..211
e-value: 5.2E-8
score: 32.1
coord: 103..124
e-value: 6.6E-10
score: 38.2
coord: 42..63
e-value: 2.5E-9
score: 36.4
coord: 157..178
e-value: 8.8E-10
score: 37.8
IPR003109GoLoco motifPROSITEPS50877GOLOCOcoord: 102..124
score: 9.929
IPR003109GoLoco motifPROSITEPS50877GOLOCOcoord: 41..63
score: 10.841
IPR003109GoLoco motifPROSITEPS50877GOLOCOcoord: 156..178
score: 10.084
IPR003109GoLoco motifPROSITEPS50877GOLOCOcoord: 189..211
score: 9.584
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..105

Blast
[Close]
BLAST of TCONS_00012607-protein vs. Swiss-Prot (Human)
Match: GPSM1 (G-protein-signaling modulator 1 OS=Homo sapiens GN=GPSM1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.208e-26
Identity = 69/173 (39.88%), Postives = 97/173 (56.07%), Query Frame = 0 
Query:   42 EDFLDMLLKSQGSRLDDQRVDFP-KQRVSSTNGTRPSKTKSSTKNSKKNSSKKQSAKPEHSKEGFMDLVARLQGDRMDEQRCSLPELPGL-VTEAKKKLIENQKQQQQQKPNQEVPDDAFLDMLMRCQASRINDQRVEFPP---IPRGPTVPDEDFFNLIARLQSKRIDTQRV 209
            E F D+L K Q SR+DDQR      Q  ++     P+      + S        +A P+   E F DL+A  Q  R+D+QR S+  LPGL +T +    +    + Q+       P D F +ML++ Q+SRI+DQR   PP   +PRGPT+PDEDFF+LI R+Q+KR+D QRV
Sbjct:  496 ECFFDLLTKFQSSRMDDQRCPLDDGQAGAAEATAAPTLEDRIAQPS-------MTASPQ--TEEFFDLIASSQSRRLDDQRASVGSLPGLRITHSNAGHLRGHGEPQE-------PGDDFFNMLIKYQSSRIDDQRC--PPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQRV 650
The following BLAST results are available for this feature:
BLAST of TCONS_00012607-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPSM18.208e-2639.88G-protein-signaling modulator 1 OS=Homo sapiens GN... [more]
back to top