TCONS_00012625-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012625-protein
Unique Name	TCONS_00012625-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	946

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012625-protein ID=TCONS_00012625-protein|Name=TCONS_00012625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=946bp
MSYTKNDGISVSIQNLDLGDGDYDSDENDDWMFTSNVPIKTITSNSNNAD
QAQSTEDHKDDYYAKPQTFQDWLNLIEDKYFDERDDLVRQTLQTAYNEVE
SPFSLLLHVLHRAFFDLYSKRVPISFYALDEMDSWRTLKRTNGEFVPVPS
SSQKQIATEFICRSGYNYLDKVNSIFQLDEGDNSDLAQFVQTDNLKSKKL
KETVTIILTLKLQHCFDCEKIFFPLIANDQLQHIEHYVGDNKKLQIDYVG
FLNKLLNMEPAHIEQMLIEQDLSLKDPSKIKHKTLTKIAEKAVKRYQLNP
DDFPYIFGAKNVSSLFYLIKMRIAEKNNGGTKAKLMKWDHLIEAAVAGKL
WLQLKLLDRLINLGDTELAIEWAKHLHIPPNQLPMIIIDELGLHHLVHKE
LSSEASGQTRQDTDEHAEEDWESEIENDPSSKTGFSLGKGFYDSEQEKED
LESYHQLSLPTSSIHLVDTVKGLVEMTKQLFQDGNVIGFDAEWKPVMCRA
GEKEYMSILQLALKDRVYILDIKVLYTTNGAEDALRTFFFQFFTKRTVTK
IGYGITGDMKLIIGMFEYAKEMVKNAESLVDLCGVSQKILPHQMVQNELY
NLDNKSLLDKGLSMLVNRTLGKSLDKTFQVSDWERRPLQEQQLYYAALDA
YCLLEVYDRLCYFVKKYDLNFNTKEKMKTKWLKTKPVGGQQRKDKYDKRE
NKEKVRLPDNKPLYKGIPRPSTKLKVVCDTMLQGLGRQLRNCGVDTLILE
DGQDHSVALQISHKEKRIILTRGKPFFMIRGYVGEDMVMWVPDGTPREQV
KMVFTRYHIAIRSKDILSRCVDCNSDTYTKIASKEMQIIFELKHDIGQAE
MPAEQLTGCKQVDLSNFTLCENGVEIQLDFISGTKFERALRTGNWEKLFE
DVTTFYVCNCCGKVFWEGSHHKAVKETYADMIDKREYDASAYGKPG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007084	XLOC_007084	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012625	TCONS_00012625	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002562	3'-5'_exonuclease_dom
IPR012337	RNaseH-like_dom
IPR002782	Mut7-C_RNAse_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008408	3'-5' exonuclease activity
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	SMART	SM00474	35exoneu6	coord: 464..665 e-value: 3.1E-4 score: 30.1
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 467..660 e-value: 6.2E-16 score: 58.5
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 444..662 e-value: 9.2E-33 score: 112.7
IPR012337	Ribonuclease H-like domain	SUPERFAMILY	53098	Ribonuclease H-like	coord: 435..668
IPR002782	Mut7-C RNAse domain	PFAM	PF01927	Mut7-C	coord: 725..927 e-value: 1.4E-20 score: 73.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 402..436

Blast

[Close]

BLAST of TCONS_00012625-protein vs. Swiss-Prot (Human)
Match: MUT7 (Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=2 SV=3)

HSP 1 Score: 289.271 bits (739), Expect = 4.987e-84
Identity = 240/841 (28.54%), Postives = 380/841 (45.18%), Query Frame = 0

Query:  147 PVPSSSQ-----KQI---ATEFICRSGYNYLDKVNSIFQLDEGDNSDLAQFVQTDNLKSKKLKETVTIILTLKLQHCFDCEKIFFPLIANDQLQHIEHYVGDNKKLQIDYVGFLNKLLNMEPAHIEQMLIEQDLSLKDPS-------KIKHKTLTKIAEKAVKRYQLNPDDFPYIFGAKNVSSLFYLIKMRIAEKNNGGTKAKLMKWDHLIEAAVAGKLWLQLKLLDRLINLGDTELAIEWAKHLHIPPNQLPMIIIDELGLHHLVHKELSSEASGQTRQDTDEHAEEDWESEIENDPSSKTGFSLGKGFYDSEQEKEDL-ESYHQLSLPTSSIHLVDTVKGLVEMTKQLFQDGNVIGFDAEWKPVMCRAGEKEYMSILQLALKDRVYILDIKVLY---TTNGAEDALRTFFFQFFTKRTVTKIGYGITGDMKLIIGMFEYAKEMVKNAESLVDLCGVSQKILPHQMVQNELYNLDNKSLLDKGLSMLVNRTLGKSLDKTFQVSDWERRPLQEQQLYYAALDAYCLLEVYDRLCYFVKKY----DLNFNTKEKMKTKWLKTKPVGGQQRKDKYDKRENKEKVRLPDNKPLYKGIPR-PSTKLKVVCDTMLQGLGRQLRNCGVDTLILEDGQDHSVALQISHKEKRIILTRGKPFFMIRGYVGEDMVMWVPDGT--PREQVKMVFTRYHIAIRSKDILSRCVDCNSDTYTKIASKEM-QIIFELKHDIG--------------QAEMPAEQLT--GC---------KQVDLSNFT--LCENGVEIQLDFISGTKFERALRTGNWEKLFEDVTTFYVCNCCGKVFWEGSHHKAVKETYADMID 933
            P PS +Q     KQ+   A + +  S  +    + SIFQL + D S L   V   +    + +E  T+  TLKLQ     EK+  PL+  D++  +E YV     LQ        +LL +  +  +     +D++ + P        K+  K L++   +  +RY + P   P     + +++L +L   R  EK+          W   ++  V    WLQ +L   L++  D   A + A  L +P  +LP  +  EL    L  +  ++EA                                     DS  E +D+ + Y+QL +P  ++HL+ + + L      L Q   V+G D EW PV   AG +   S+LQ+A++  V++LD+  L    T  GA+ A      Q  +  ++TK+GYG+ GD++ +         + K     +DL  V +++   ++       +D    L +GLS+LV + LG +LDKT Q+S+W+RRPL E+Q+ YAA DAYCLLEV+  LC    ++    DL  + + + + +    KP G Q+       R+    V + +        P+ P+   +VVCD MLQGL R LR  GVD  +L +G+DH  A +++ +E RIILT G+PF  +R  VG    + V D +   ++Q K V   +++ +   DI SRC  CN D Y K++   M Q+++   H  G              Q   PA      GC         +  DL   T  +  +G  +QL  +        LRT         +  FY C  CGKVFW+GSH   V   + DM++
Sbjct:   92 PCPSLAQHSLRLKQLQARAVKVLTESPPSLAAPLASIFQLQDADRSCLLAHVHRLH-HEGRFREAATLGATLKLQSELGVEKMSIPLLLQDKVALVERYVAGFPDLQ-------RRLLVLMDSWCQPGFDIKDVARRYPEVTSLSLEKLSPKALSRQVLRLQERYGVAPALCPNAAIQQRLAALRHLCHKRFVEKSLSQEN-----WTDHVQGLVGQSPWLQEQLSQLLVSHSDPVTAAQCAMELLLPEERLPAAVAVELRRFRLQGR--ATEA-------------------------------------DSRLEVKDMKDRYYQLPIPRENVHLLASWEDLTRHEGALLQCHQVVGVDVEWTPVFV-AGGRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ-AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAHVEKQILGGMDLLLVHRQM---RVASVPAPAVDRAREL-RGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLEVHQALCREPARFHLSEDLAGSRRPRHRERPGARKPPGLQKASAPAAPRQVPVAVAVSEG-----AAPQIPARAFRVVCDNMLQGLARSLRCLGVDARMLGNGEDHRRAAEVARQEGRIILTSGQPFHKLRAQVGAGRCLSV-DCSLKAQQQAKAVLKHFNVRVTHADIFSRCQACNCDQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQEPGPAPDAAPEGCTYDRPCRWLQMADLRAETPDMLADGTRLQLAGVPVG----VLRTPG-------LRCFYCCTGCGKVFWDGSHLGRVATHFRDMLE 857

The following BLAST results are available for this feature:

BLAST of TCONS_00012625-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012625-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MUT7	4.987e-84	28.54	Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 ...	[more]

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TCONS_00012625-protein (polypeptide) - C. hemisphaerica