TCONS_00012652-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012652-protein
Unique NameTCONS_00012652-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1150

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012652-protein ID=TCONS_00012652-protein|Name=TCONS_00012652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1150bp
XHTFAWPFTKPVDAVKLRIPDYYEIIKRPMDLGTIKKKLEHNDYQSSKEC
IEEFRLVFNNCYQYNKPGEDVVVMAETVEKFFSEKLAMMPPEEYEIIKGA
KSVGKPAVKPAVTSTGDPLEPAAKKIKQPINKPRTTAADSTQPTLTSPDV
STIAEVDKQLAATSPSSVVTSTVAMTPDLMTPKLPSRSASLVKSGVKRKK
ADTTTPGTPAISTPTTGLSTPLLAAKIPVRRESSNRTIKKPTRELPGEQE
IAPPSGKKKGKLSEQLKYCNNILKELFAKKHESCAWPFYKPVAVDELGLH
DYLDIIKQPMDLTSIRQKMDTREYNTPYEFATDVRLIFSNCYKYNPPDHD
VVKMARKLQDVFEYKFARMPDEPPEQETESVAATPSSTTNTTTKITRSSN
KIPAANSVEAKSESEEDSDNDSSDDSGNDSSEDRKKTLAMLEAQLISVHE
ELSKLTKVERDRKAEKSGKKGKKKDKEKDIKKDKKEVKVKVETKDKNKNI
KKKTKDKKKDDTNLDGVKSAKNDKKKETKTPAKKKTAAERSKKSKIASKK
EYLPEDSDDEENVKNMSYDEKRQLSLDINKLPGDKLGKVVHIIQTKEPSL
RGNNPDEIEIDFETLRPATLRELEKYVNSCVKKKKTPVKKPKSAEDREAL
QAKKKEELEKRLQDVSGKLQAVAPKKPKKSSKKDPNSNEPKSSRLSESST
SSGSSSSSSSSSSSSSSSDSSSDSEKEGPSKPKKVHKEEKPKQDVRKSIG
LLSMTKDSKPPQPVSISSIVNSTNIKTSAAATSNSSVTVDRPTTTQAVKT
EPPILTKAPQLNNESKPPPLQNAAANKPPPVITPTPNILTKQEAQTNGKQ
NLSPIPISTKVPELTPATTVKPPLKQEIKLEIKKQPETPSKNAPTLPVTT
AANLFNRGTTNAPTPSSLLKMKNNSNPPTLTPNTSTNPPTPSEKKQMPSL
TPGTPITPMISPLVSSDSDANSKDNKLSFGILDDSALPKTIATPKADIYS
KPVASPADSASKNPVKSLSSWGRGNATPNTTPKATGKLDQTQRTASFEQF
QKLAKEKEEKEKAAKQVEEQLKRQKEREEQERQRVMDDKRREKEEEEALE
RARQQKDDNERKRREMERRKEQERRKRQALAGTVDMTRQSDIMGDFEATL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007097XLOC_007097Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012652TCONS_00012652Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR027353NET_dom
IPR031354BRD4_CDT
IPR018359Bromodomain_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1050..1133
NoneNo IPR availableCDDcd05498Bromo_Brdt_II_likecoord: 265..366
e-value: 8.75833E-57
score: 191.338
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 19..35
score: 63.17
coord: 35..53
score: 31.01
coord: 3..16
score: 44.25
coord: 333..352
score: 50.43
IPR001487BromodomainSMARTSM00297bromo_6coord: 2..91
e-value: 2.5E-29
score: 113.4
coord: 262..371
e-value: 1.1E-44
score: 164.4
IPR001487BromodomainGENE3D1.20.920.10coord: 1..230
e-value: 5.2E-35
score: 119.7
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 2..76
e-value: 7.6E-19
score: 67.5
coord: 269..357
e-value: 9.0E-21
score: 73.7
IPR001487BromodomainGENE3D1.20.920.10coord: 231..388
e-value: 3.3E-42
score: 143.2
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 280..352
score: 20.31
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 1..72
score: 22.242
IPR001487BromodomainSUPERFAMILY47370Bromodomaincoord: 2..96
IPR001487BromodomainSUPERFAMILY47370Bromodomaincoord: 250..376
IPR027353NET domainPFAMPF17035BETcoord: 566..629
e-value: 1.7E-27
score: 95.3
IPR027353NET domainPROSITEPS51525NETcoord: 556..638
score: 21.815
IPR031354Bromodomain protein 4, C-terminalPFAMPF17105BRD4_CDTcoord: 1112..1150
e-value: 1.1E-14
score: 53.6
IPR018359Bromodomain, conserved sitePROSITEPS00633BROMODOMAIN_1coord: 5..64
IPR018359Bromodomain, conserved sitePROSITEPS00633BROMODOMAIN_1coord: 285..344

Blast
BLAST of TCONS_00012652-protein vs. Swiss-Prot (Human)
Match: BRDT (Bromodomain testis-specific protein OS=Homo sapiens GN=BRDT PE=1 SV=4)

HSP 1 Score: 439.113 bits (1128), Expect = 6.991e-137
Identity = 294/709 (41.47%), Postives = 408/709 (57.55%), Query Frame = 0
Query:    2 HTFAWPFTKPVDAVKLRIPDYYEIIKRPMDLGTIKKKLEHNDYQSSKECIEEFRLVFNNCYQYNKPGEDVVVMAETVEKFFSEKLAMMPPEEYEIIKGAKSVGKPAVKP--AVTSTGDPLEPAA--KKIKQ---PINKPRTTAADSTQPTLTSPDVSTIAEVDKQLAATSPSSVVTSTVAMTPDLMTPKLPSRSASLVKSGVKRKKADTTTPGTPAISTPTTGLSTPLLAAK---IPVRRESSNRTIKKPTRELPGEQEIAPPSGKKKGKLSEQLKYCNNILKELFAKKHESCAWPFYKPVAVDELGLHDYLDIIKQPMDLTSIRQKMDTREYNTPYEFATDVRLIFSNCYKYNPPDHDVVKMARKLQDVFEYKFARMPDEPPEQETESVAATPSSTTNTTTKITRSSNKIPAANSVEAKSESEEDSDNDSSDDSGNDSSEDRKKTLAMLEAQLISVHEELSKLTKVERDRKAEKSGKKGKKKDKEKDIKKDKKEVKVKVETKDKNKNIKKKTKDKKKDDTNLDGVKSAKNDKKKETKTPAKKKTAAERSKKSKIASKKEYLPEDSDDEENVKNMSYDEKRQLSLDINKLPGDKLGKVVHIIQTKEPSLRGNNPDEIEIDFETLRPATLRELEKYVNSCVKKKKTPVKKP--KSAEDREALQAKKKEELEKRLQDVSGKLQAVAPKKPKKSSKKDPNSNEPKSSRLSES 698
            H+F+WPF +PVDAVKL++PDYY IIK PMDL TIKK+LE+  Y  + ECIE+F  +F+NCY YNKPG+D+V+MA+ +EK F +KL+ MP EE   + G K   K   +   AV+S  +   P+A  K  KQ   P   P+T+          SP           L     +SV +S              S++A+ V  GVKRK ADTTTP T A+   +    +P    K   +P  +E+       P   LP  Q+    +  K  K++EQL++C+ ILKE+ AKKH S AWPFY PV V+ LGLH+Y D++K PMDL +I++KMD +EY   Y+FA DVRL+F NCYKYNPPDH+VV MAR LQDVFE  F+++P EP E  +  +    +  T TT +                     E+++  SS+ + +D SED                E + +L K++   KA                   + +V  +V  +  NK  +K  K+KKK+  N     S +N +K   +   K+K+   + KK K    ++++   S+DE+N K M+YDEKRQLSL+INKLPGDKLG+VVHIIQ++EPSL  +NPDEIEIDFETL+ +TLRELEKYV++C++K+  P+K P  K    +E L ++KK+ELEKRL DV+ +L +   K+  KS K  P+      SRLSES
Sbjct:   46 HSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQMPQEEQ--VVGVKERIKKGTQQNIAVSSAKEKSSPSATEKVFKQQEIPSVFPKTS---------ISP-----------LNVVQGASVNSS--------------SQTAAQVTKGVKRK-ADTTTPATSAVKASSEF--SPTFTEKSVALPPIKENM------PKNVLPDSQQ--QYNVVKTVKVTEQLRHCSEILKEMLAKKHFSYAWPFYNPVDVNALGLHNYYDVVKNPMDLGTIKEKMDNQEYKDAYKFAADVRLMFMNCYKYNPPDHEVVTMARMLQDVFETHFSKIPIEPVE--SMPLCYIKTDITETTGR---------------------ENTNEASSEGNSSDDSED----------------ERVKRLAKLQEQLKA----------------VHQQLQVLSQVPFRKLNKKKEKSKKEKKKEKVN----NSNENPRKMCEQMRLKEKSKRNQPKKRK----QQFIGLKSEDEDNAKPMNYDEKRQLSLNINKLPGDKLGRVVHIIQSREPSLSNSNPDEIEIDFETLKASTLRELEKYVSACLRKR--PLKPPAKKIMMSKEELHSQKKQELEKRLLDVNNQLNS--RKRQTKSDKTQPSKAVENVSRLSES 640          

HSP 2 Score: 103.605 bits (257), Expect = 3.038e-22
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 0
Query:  257 KKKGKLSEQLKYCNN-ILKELFAKKHESCAWPFYKPVAVDELGLHDYLDIIKQPMDLTSIRQKMDTREYNTPYEFATDVRLIFSNCYKYNPPDHDVVKMARKLQDVFEYKFARMPDE 372
            KK G+L+ QL+Y    +LK+L+  KH S +WPF +PV   +L L DY  IIK PMDL +I+++++ + Y    E   D   +FSNCY YN P  D+V MA+ L+ +F  K ++MP E
Sbjct:   23 KKNGRLTNQLQYLQKVVLKDLW--KH-SFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQMPQE 136          
The following BLAST results are available for this feature:
BLAST of TCONS_00012652-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRDT6.991e-13741.47Bromodomain testis-specific protein OS=Homo sapien... [more]
back to top