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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012652 ID=TCONS_00012652|Name=TCONS_00012652|organism=Clytia hemisphaerica|type=transcript|length=4048bpRun BLAST on NCBI protein sequence of TCONS_00012652-protein >TCONS_00012652-protein ID=TCONS_00012652-protein|Name=TCONS_00012652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1150bp XHTFAWPFTKPVDAVKLRIPDYYEIIKRPMDLGTIKKKLEHNDYQSSKECRun BLAST on NCBI transcript from alignment at sc0000146:426695..447099- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012652 ID=TCONS_00012652|Name=TCONS_00012652|organism=Clytia hemisphaerica|type=transcript|length=20405bp|location=Sequence derived from alignment at sc0000146:426695..447099- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000146:426695..447099- >TCONS_00012652 ID=TCONS_00012652|Name=TCONS_00012652|organism=Clytia hemisphaerica|type=CDS|length=58701bp|location=Sequence derived from alignment at sc0000146:426695..447099- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012652 vs. Swiss-Prot (Human)
Match: BRD2 (Bromodomain-containing protein 2 OS=Homo sapiens GN=BRD2 PE=1 SV=2) HSP 1 Score: 331.643 bits (849), Expect = 7.440e-97 Identity = 187/397 (47.10%), Postives = 245/397 (61.71%), Query Frame = 2
Query: 5 HTFAWPFTKPVDAVKLRIPDYYEIIKRPMDLGTIKKKLEHNDYQSSKECIEEFRLVFNNCYQYNKPGEDVVVMAETVEKFFSEKLAMMPPEEYEII---------KGAKSVGKPAVKPAVTSTGDPLEPAAKKIKQ-----PINKPRTTAADSTQPT-LTSPDVSTIAEVDKQLXXXXXXXXXXXXXXMTPDLMTPKLPSRSASLVKSGVKRKKADTT--------TPGTPAIXXXXXXXXXXXXAAKIPVRRESSNRTIKKPTRELPGEQEIAPPSGKKKGKLSEQLKYCNNILKELFAKKHESCAWPFYKPVAVDELGLHDYLDIIKQPMDLTSIRQKMDTREYNTPYEFATDVRLIFSNCYKYNPPDHDVVKMARKLQDVFEYKFARMPDEPPE 1126
H FAWPF +PVDAVKL +PDY++IIK+PMD+GTIK++LE+N Y ++ EC+++F +F NCY YNKP +D+V+MA+T+EK F +K+A MP EE E++ KGAK A++ +VTS PA + P + TT + P+ ++SP + ++ P L P K GVKRK ADTT PG+PA + S AA++P R S R IK P ++LP Q+ KKGKLSEQLK+CN ILKEL +KKH + AWPFYKPV LGLHDY DIIK PMDL+++++KM+ R+Y EFA DVRL+FSNCYKYNPPDHDVV MARKLQDVFE+++A+MPDEP E
Sbjct: 93 HQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKNSHKKGAKLA---ALQGSVTSAHQ--VPAVSSVSHTALYTPPPEIPTTVLNIPHPSVISSPLLKSLHSAG------------------PPLLAVTAAPPAQPLAKKKGVKRK-ADTTTPTPTAILAPGSPA----SPPGSLEPKAARLPPMRRESGRPIKPPRKDLPDSQQQH--QSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDEPLE 459 HSP 2 Score: 127.102 bits (318), Expect = 1.564e-29 Identity = 58/75 (77.33%), Postives = 69/75 (92.00%), Query Frame = 2
Query: 1667 DSDDEENVKNMSYDEKRQLSLDINKLPGDKLGKVVHIIQTKEPSLRGNNPDEIEIDFETLRPATLRELEKYVNSC 1891
DS++EE + MSYDEKRQLSLDINKLPG+KLG+VVHIIQ +EPSLR +NP+EIEIDFETL+P+TLRELE+YV SC
Sbjct: 632 DSEEEEESRPMSYDEKRQLSLDINKLPGEKLGRVVHIIQAREPSLRDSNPEEIEIDFETLKPSTLRELERYVLSC 706 The following BLAST results are available for this feature:
BLAST of TCONS_00012652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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