TCONS_00012792-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012792-protein
Unique NameTCONS_00012792-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012792-protein ID=TCONS_00012792-protein|Name=TCONS_00012792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MQYLTLSWCFVWTLVVAVAFHHFSYGENDIVVSDISEGVVDGIPDEMPIK
DGINSERFIPTHEWQVIKRGQAIPAGLHVRMNFQTGVKEAKLMDSESSEQ
KSVTKGEQFHVSDSSSKSTEEIKKKKKGPKIILADELPDDTFSNEKIHYK
KSHLKQVLHDFKDKIGTKDIEHVTWSDDAKDMLQESFGEEKDEPKTEAKK
FRSMDEIKKDLEKNMGWNIKSDVQIMQDIVHQLKDEKATDKEKSVSLDTL
EDYVHQIDNGRDLDKIGGLKEVIHLLNDSSEILQEKAANVIGGAAQSNKE
VQDAIFKHGGLKFLIRMLDLAKEKLTQKKGLYAVSAVIRGNHQIQNEFVK
YGGLGSVLRIIKESESNALKVKAVTMMYDLIVEQNEIMQKLIQAGKIKPG
EQSPLFKSLKEAGWCHLLVPMLQSEDYDSKEKVIQALVVSVQSCVKELKN
EKYISELTKQLKLLETTIVEEDDQDFKSYLVSLKQQLAENILKQLV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007178XLOC_007178Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012792TCONS_00012792Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013918Nucleotide_exch_fac_Fes1
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 454..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..127
NoneNo IPR availableCDDcd00020ARMcoord: 262..371
e-value: 1.09587E-4
score: 39.6052
IPR013918Nucleotide exchange factor Fes1PFAMPF08609Fes1coord: 190..263
e-value: 1.3E-5
score: 25.9
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 174..494
e-value: 3.8E-28
score: 97.8
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 214..451

Blast
[Close]
BLAST of TCONS_00012792-protein vs. Swiss-Prot (Human)
Match: SIL1 (Nucleotide exchange factor SIL1 OS=Homo sapiens GN=SIL1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.812e-52
Identity = 124/395 (31.39%), Postives = 204/395 (51.65%), Query Frame = 0 
Query:   56 ERFIPTHEWQVIKRGQAIPAGLHVRMNFQTGVKEAKLMDSESSEQKSVTKGEQFHVSDSSSKSTEEIKKKKKGPKIILADELPDDTFSNEKIHYKKSHLKQVLHDFKDKIGTKDIEHVTWSDDAKDMLQESFGEEKDEPKTEAKKFRSMDEIKKDLEKNMGWNIKSDVQIMQDIVHQLKDEKATDKEKSVSLDTLEDYVHQIDNGRDLDKIGGLKEVIHLLNDSSEILQEKAANVIGGAAQSNKEVQDAIFKHGGLKFLIRMLDLAKEKLTQKKGLYAVSAVIRGNHQIQNEFVKYGGLGSVLRIIKESESNALKVKAVTMMYDLIV------EQNEIMQKLIQAGKIKPGEQSPLFKSLKEAGWCHLLVPMLQSEDYDSKEKVIQALVVSVQSC 444
            E F PTHEWQ ++ GQA+PAG HVR+N QTG +EAKL                        +  ++ +   KG ++        D  +N    Y    LK  L  FK+                 +M  ES  E+K       + FR ++E+KKD ++ +   I++D+QIM  ++++     ++ +EK  +L  LE YVHQ+DN +DL   GGL+ VI+ LN +  +++E AA V+G A  SN +VQ    + G L+ L+ +L   +    +KK L+A+ +++R     Q +F+K GGL  +  +++E  +  L V+ VT++YDL+       E+ E+ Q++    K++   Q  L   L E GWC +   +L   ++D++EKV+Q L V + +C
Sbjct:   68 EVFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKL------------------------QYEDKFRNNLKGKRL--------DINTNT---YTSQDLKSALAKFKE---------------GAEM--ESSKEDKARQAEVKRLFRPIEELKKDFDE-LNVVIETDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGGLQVLRTLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEM-SPEKLQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQTLGVLLTTC 408
The following BLAST results are available for this feature:
BLAST of TCONS_00012792-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIL16.812e-5231.39Nucleotide exchange factor SIL1 OS=Homo sapiens GN... [more]
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