TCONS_00012792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012792
Unique NameTCONS_00012792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3093

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012792 ID=TCONS_00012792|Name=TCONS_00012792|organism=Clytia hemisphaerica|type=transcript|length=3093bp
CTTAACCACCACCttaactttcactttcactttttaaaACACTATATACA
ATGAATAAAAACCTGAGAATGAAAAGAGCTCATAATAGAGAGCTTTCTAA
GCCATTCGTCAGATGTCAGATGTTAAGGGCCCATAACACAACACCACCAA
AAATCAGTAGATAAGCTATTGCGAATCTTGAAGTGGCTTTATGTTGCTCT
caaatgaaaattatatatGTTGTTTTTCATGGAAAAAGGCCTATAATTAT
CTTGACTCTTATCTTGAATTTCATCAGCTTTTTAAGGGAGGGAAAACCTT
ATAAAAATTCTATATGTAATAAAATACTTTCCTTTTATTTGGCAGAGTAA
TTTCAAAACTGAAATATTGTTTAAGGATGCAGTACTTAACGTTATCTTGG
TGTTTTGTTTGGACCTTAGTTGTTGCTGTTGCATTTCATCATTTTTCATA
TGGGGAAAATGACATTGTTGTATCAGACATCAGTGAAGGTGTTGTTGATG
GCATCCCAGATGAGATGCCAATCAAGGATGGTATCAATTCTGAGCGTTTC
ATACCAACCCATGAATGGCAAGTAATCAAAAGAGGGCAAGCCATACCTGC
AGGACTCCATGTTCGGATGAACTTTCAAACAGGTGTCAAAGAAGCTAAGT
TGATGGATTCTGAAAGTAGCGAGCAAAAGTCTGTGACAAAAGGAGAACAA
TTCCATGTGTCAGATTCCAGCAGTAAATCTACTGAagagataaaaaagaa
aaagaaaggacCAAAAATTATTCTTGCTGATGAATTACCAGATGAtacat
tttcaaatgaaaagatACATTACAAGAAATCACACTTGAAACAAGTTCTT
CACGATTTCAAAGACAAGATTGGTACAAAGGATATAGAGCATGTCACTTG
GTCTGATGATGCAAAGGATATGCTGCAAGAGAGTTTTGGTGAGGAAAAAG
ATGAGCCAAAAACCGAAGCCAAAAAGTTTCGTTCAATGGATGAGATTAAG
AAAGATCTTGAAAAGAACATGGGCTGGAATATCAAATCGGATGTTCAAAT
CATGCAAGATATCGTCCACCAACTAAAAGATGAAAAAGCAACCGATAAAG
AAAAATCTGTTTCACTCGATACTCTTGAAGATTACGTGCATCAAATTGAT
AATGGACGTGATTTAGATAAGATTGGTGGATTGAAAGAAGTTATTCATTT
GTTGAATGACTCGAGTgaaattttacaagaaaaagCTGCTAATGTTATTG
GTGGTGCTGCACAAAGCAACAAAGAGGTTCAAGATGCAATCTTCAAACAC
GGAGGCCTGAAATTCTTAATTCGAATGTTGGACTTAGCAAAAGAAAAGTT
GACTCAGAAGAAAGGATTATATGCAGTATCAGCTGTCATTCGTGGCAatc
atcaaattcaaaatgaGTTTGTCAAATATGGAGGTTTAGGTTCAGTTCTT
CGTATTATCAAAGAATCTGAATCAAATGCCTTGAAGGTGAAAGCTGTGAC
CATGATGTATGATCTCATTGTTGAACAAAATGAAATTATGCAGAAGTTGA
TTCAAGCTGGAAAGATAAAACCAGGAGAACAGTCTCCATTATTCAAATCT
CTCAAAGAAGCTGGTTGGTGTCATCTACTTGTTCCAATGCTTCAAAGTGA
AGATTATGATTCGAAAGAGAAAGTCATTCAAGCTCTCGTCGTTTCTGTCC
AATCATGTGtcaaagaactcaaaaatgaaaaatatatttcagaGTTGACG
AAGCAGTTAAAACTTCTTGAGACAACGATAGTAGAAGAAGATGATCAAGA
TTTTAAGAGCTATCTGGTATCGTTGAAACAACAacttgctgaaaatattt
tgaaacaattagTTTGATGAACACAGTAGTGTGTTGTTGATGTGGAAGAG
AAGGATTTGTTCTCGTGATACTTTAAGGACTGAGTGGCAGATATCTTGGT
TGCTTTTAAGATTGAAGAACCAAAATGATACAAATTCCCAGCTGTGAACT
GGTATTAACTTGTCGAATTAAAACAACCACATGTTTTTAACTTGAGTACC
AATCTACTCAAAAACTTTTCCATGGAAGGTCGATGAACAGGCGATTTATT
TTGGTATGAACTCATAAAGAAAGAATCAATATGAATACAGAATAAAGCAG
AATATTCGCGTTCATATTTTTAACATAGTAGCATATTCAATTTTATATTG
CGTAGCTGGGATCAAAATACTTCAACCTTTGAAATGCGGGACATCAGTTT
TGTAAGATGACGCGGTACAGTGGGCTGGTGAAGATAAAGTTGACTGCAGC
TCAACTTTTTTGGAATGAGCGCATTGTATGACGTCATTGATAGACAAATT
GATCTCCCGTATCTTCTGTTTAAGATGAATCGATTGGAGGTTGATTAATG
GCTTGAGACCAACTTTTGGATTTAATGGTAGTGTCGTCTTTACTTTAGTA
GAttagattatttttaaaaaatctttaaaaaaatgtagtatttagttttt
tgaatttttattagaATAATTAATTGTACATAATTTTCTGTCCTATTAAT
TTGGAAGGTCAACATATTTATATGGCAATTACGTCACATTTTTTGTTGTA
TTAATTGTTAGGAAGTTGACTGCAGTTCAACTTTCTTGAAATTTGCATCA
AACTGGATGTGTAAATTGCCTATTGAAATTGATTGACCTCTCTTtcacaa
tgaaaattattttgtcaGGATTTAATTTAGTATATCAGCacgttttgtaa
aaatattcttcGTGGACTtaatcttttcaatttttttttctggtagTTTT
ATCATTAGTTTATATTCTGTTTTTCAAACTCTTTTTTAGCATTTTGGCTT
ACATTCAAAAGGATCAACTGTAAGCAGAGATAGCAGGTAGTCTACTGAAT
TTCTGCCAATAACATTCTTTTTAAACATTTGTTAGATttttactaacttt
ttttgaatttatttattagacTTAGTGGGGAATAATTACATTacaacttt
aaaatcttttttacgAATTTAACTTTATTGTAATATTCGAAAGTATCTTC
TTGAAATTATGAGAAAATCGAACTAGTTTTTCGAACAAAGATA
Run BLAST on NCBI

protein sequence of TCONS_00012792-protein

>TCONS_00012792-protein ID=TCONS_00012792-protein|Name=TCONS_00012792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MQYLTLSWCFVWTLVVAVAFHHFSYGENDIVVSDISEGVVDGIPDEMPIK
DGINSERFIPTHEWQVIKRGQAIPAGLHVRMNFQTGVKEAKLMDSESSEQ
KSVTKGEQFHVSDSSSKSTEEIKKKKKGPKIILADELPDDTFSNEKIHYK
KSHLKQVLHDFKDKIGTKDIEHVTWSDDAKDMLQESFGEEKDEPKTEAKK
FRSMDEIKKDLEKNMGWNIKSDVQIMQDIVHQLKDEKATDKEKSVSLDTL
EDYVHQIDNGRDLDKIGGLKEVIHLLNDSSEILQEKAANVIGGAAQSNKE
VQDAIFKHGGLKFLIRMLDLAKEKLTQKKGLYAVSAVIRGNHQIQNEFVK
YGGLGSVLRIIKESESNALKVKAVTMMYDLIVEQNEIMQKLIQAGKIKPG
EQSPLFKSLKEAGWCHLLVPMLQSEDYDSKEKVIQALVVSVQSCVKELKN
EKYISELTKQLKLLETTIVEEDDQDFKSYLVSLKQQLAENILKQLV
Run BLAST on NCBI

transcript from alignment at sc0000156:300871..305048+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012792 ID=TCONS_00012792|Name=TCONS_00012792|organism=Clytia hemisphaerica|type=transcript|length=4178bp|location=Sequence derived from alignment at sc0000156:300871..305048+ (Clytia hemisphaerica)
CTTAACCACCACCttaactttcactttcactttttaaaACACTATATACA
ATGAATAAAAACCTGAGAATGAAAAGAGCTCATAATAGAGAGCTTTCTAA
GCCATTCGTCAGATGTCAGATGTTAAGGGCCCATAACACAACACCACCAA
AAATCAGTAGATAAGCTATTGCGAATCTTGAAGTGGCTTTATGTTGCTCT
caaatgaaaattatatatGTTGTTTTTCATGGAAAAAGGCCTATAATTAT
CTTGACTCTTATCTTGAATTTCATCAGCTTTTTAAGGGAGGGAAAACCTT
ATAAAAATTCTATATGTAATAAAATACTTTCCTTTTATTTGGCAGAGTAA
TTTCAAAACTGAAATATTGTTTAAGGATGCAGTACTTAACGTTATCTTGG
TGTTTTGTTTGGACCTTAGTTGTTGCTGTTGCATTTCATCATTGTAAGTT
TTTCTGCTTTATGAATTTTATTCCAAATAAAGAGTTTTTCAACCTTAACT
GATCttgtttgaaaacttttttcccaataaaaatattataaataaaagat
aaaagcaGTTTCGTTGACaattaataatgataataacttctttttcagtt
ttggtCAGTCACCAAAATTGACTTTCTTTTCTTAATCTTTTAGTTTCATA
TGGGGAAAATGACATTGTTGTATCAGACATCAGTGAAGGTGTTGTTGATG
GCATCCCAGATGAGATGCCAATCAAGGATGGTATCAATTCTGAGCGTTTC
ATACCAACCCATGAATGGCAAGTAATCAAAAGAGGGCAAGCCATACCTGC
AGGACTCCATGTTCGGATGAACTTTCAAACAGGTGTCAAAGAAGCTAAGT
TGATGGATTCTGAAAGTAGCGAGCAAAAGTCTGTGACAAAAGGAGAACAA
TTCCATGTGTCAGATTCCAGCAGTAAATCTACTGAagagataaaaaagaa
aaagaaaggacCAAAAATTATTCTTGCTGATGAATTACCAGATGAtacat
tttcaaatgaaaagatACATTACAAGAAATCACACTTGAAACAAGTTCTT
CACGATTTCAAAGACAAGATTGGTACAAAGGATATAGAGCATGTCACTTG
GTCTGATGATGCAAAGGATATGCTGCAAGAGAGTTTTGGTGAGGAAAAAG
GTAAGTCCTGGTACAATATTacaaattttattgatttttttcagaaatca
ttgaaatcaaGATGTATTTTGATTCCAATAATGAAAACTTACAAACTTAT
ACATGCAAAATGATTTCCTGTCACAGATATCACTTTTCCTTATTTTAAAA
CATAACAATTATTTTATGATGGTTTTTTATTTCAGATGAGCCAAAAACCG
AAGCCAAAAAGTTTCGTTCAATGGATGAGATTAAGAAAGATCTTGAAAAG
AACATGGGCTGGAATATCAAATCGGATGTTCAAATCATGCAAGATATCGT
CCACCAACTAAAAGATGAAAAAGCAACCGATAAAGAAAAATCTGTTTCAC
TCGATACTCTTGAAGATTACGTGCATCAAATTGATAATGGACGTGATTTA
GATAAGATTGGTGGATTGAAAGAAGTTATTCATTTGTTGAATGACTCGAG
TgaaattttacaagaaaaagCTGCTAATGTTATTGGTGGTGCTGCACAAA
GGTAAACatggaaataaaattttgtGTTCATTGGCTCGTATTAAACAGGC
AATTTTAAACTTTATTCTATGATCAACAGCCATTGTTTCCTCCTCCCTCC
ATTTTGAGAtatagttgactctctctaattcgatcttcaaggaacGATTC
TGATTCTTCTTCGAATCAGAGAAAGGTTAAGTGGAAGGaaatttccagct
gaggggaccaatattttagttcaaaCTACAGAAAGAATAGAGTGAATTGA
CTTTATTTGGTATTCTTCTATTTTTCAGCAACAAAGAGGTTCAAGATGCA
ATCTTCAAACACGGAGGCCTGAAATTCTTAATTCGAATGTTGGACTTAGC
AAAAGAAAAGTTGACTCAGAAGAAAGGATTATATGCAGTATCAGCTGTCA
TTCGTGGCAatcatcaaattcaaaatgaGTTTGTCAAATATGGAGGTTTA
GGTTCAGTTCTTCGTATTATCAAAGAATCTGAATCAAATGCCTTGAAGGT
GAAAGCTGTGACCATGATGTATGATCTCATTGTTGAACAAAATGAAATTA
TGCAGAAGTTGATTCAAGCTGGAAAGATAAAACCAGGAGAACAGTAAgtt
gttctttttcttttgattttgccataccattttatatccatacagggggc
tggaaaaaccatttcttttgattatcttgttgttgaatattttgaatgtt
GACTGCTACCTTTTAGCATTTCATAGGACGGCCCTTCTAAACTTTCgtga
tttttgcaaattttggcctttttcacgaaagtaaatgtctttgaaaattc
ttaacagggcaattcgcgaaagtttatgctcgcgaaaaaatttcaaaaaa
attggaaatctataaaatctcgaaatcgtaataaatatcaaattttcgtc
ctgatttttcgacctcgtgaaagtttgtacgcgCCTAAAGTATTCAAAGA
GAGGCCGCGGCTAAGGTTTGGTAGGGAGCTATATTTGTTGACAATCTTTT
CCCATTTTTCATTCAGGTCTCCATTATTCAAATCTCTCAAAGAAGCTGGT
TGGTGTCATCTACTTGTTCCAATGCTTCAAAGTGAAGATTATGATTCGAA
AGAGAAAGTCATTCAAGCTCTCGTCGTTTCTGTCCAATCATGTGtcaaag
aactcaaaaatgaaaaatatatttcagaGTTGACGAAGCAGTTAAAACTT
CTTGAGACAACGATAGTAGAAGAAGATGATCAAGATTTTAAGAGCTATCT
GGTATCGTTGAAACAACAacttgctgaaaatattttgaaacaattagTTT
GATGAACACAGTAGTGTGTTGTTGATGTGGAAGAGAAGGATTTGTTCTCG
TGATACTTTAAGGACTGAGTGGCAGATATCTTGGTTGCTTTTAAGATTGA
AGAACCAAAATGATACAAATTCCCAGCTGTGAACTGGTATTAACTTGTCG
AATTAAAACAACCACATGTTTTTAACTTGAGTACCAATCTACTCAAAAAC
TTTTCCATGGAAGGTCGATGAACAGGCGATTTATTTTGGTATGAACTCAT
AAAGAAAGAATCAATATGAATACAGAATAAAGCAGAATATTCGCGTTCAT
ATTTTTAACATAGTAGCATATTCAATTTTATATTGCGTAGCTGGGATCAA
AATACTTCAACCTTTGAAATGCGGGACATCAGTTTTGTAAGATGACGCGG
TACAGTGGGCTGGTGAAGATAAAGTTGACTGCAGCTCAACTTTTTTGGAA
TGAGCGCATTGTATGACGTCATTGATAGACAAATTGATCTCCCGTATCTT
CTGTTTAAGATGAATCGATTGGAGGTTGATTAATGGCTTGAGACCAACTT
TTGGATTTAATGGTAGTGTCGTCTTTACTTTAGTAGAttagattattttt
aaaaaatctttaaaaaaatgtagtatttagttttttgaatttttattaga
ATAATTAATTGTACATAATTTTCTGTCCTATTAATTTGGAAGGTCAACAT
ATTTATATGGCAATTACGTCACATTTTTTGTTGTATTAATTGTTAGGAAG
TTGACTGCAGTTCAACTTTCTTGAAATTTGCATCAAACTGGATGTGTAAA
TTGCCTATTGAAATTGATTGACCTCTCTTtcacaatgaaaattattttgt
caGGATTTAATTTAGTATATCAGCacgttttgtaaaaatattcttcGTGG
ACTtaatcttttcaatttttttttctggtagTTTTATCATTAGTTTATAT
TCTGTTTTTCAAACTCTTTTTTAGCATTTTGGCTTACATTCAAAAGGATC
AACTGTAAGCAGAGATAGCAGGTAGTCTACTGAATTTCTGCCAATAACAT
TCTTTTTAAACATTTGTTAGATttttactaactttttttgaatttattta
ttagacTTAGTGGGGAATAATTACATTacaactttaaaatcttttttacg
AATTTAACTTTATTGTAATATTCGAAAGTATCTTCTTGAAATTATGAGAA
AATCGAACTAGTTTTTCGAACAAAGATA

Coding sequence (CDS) from alignment at sc0000156:300871..305048+

>TCONS_00012792 ID=TCONS_00012792|Name=TCONS_00012792|organism=Clytia hemisphaerica|type=CDS|length=7455bp|location=Sequence derived from alignment at sc0000156:300871..305048+ (Clytia hemisphaerica)
ATGCAGTACTTAACGTTATCTTGGTGTTTTGTTTGGACCTTAGTTGTTGC
TGTTGCATTTCATCATTTTTCATATGGGGAAAATGACATTGTTGTATCAG
ACATCAGTGAAGGTGTTGTTGATGGCATCCCAGATGAGATGCCAATCAAG
GATGGTATCAATTCTGAGCGTTTCATACCAACCCATGAATGGCAAGTAAT
CAAAAGAGGGCAAGCCATACCTGCAGGACTCCATGTTCGGATGAACTTTC
AAACAGGTGTCAAAGAAGCTAAGTTGATGGATTCTGAAAGTAGCGAGCAA
AAGTCTGTGACAAAAGGAGAACAATTCCATGTGTCAGATTCCAGCAGTAA
ATCTACTGAagagataaaaaagaaaaagaaaggacCAAAAATTATTCTTG
CTGATGAATTACCAGATGAtacattttcaaatgaaaagatACATTACAAG
AAATCACACTTGAAACAAGTTCTTCACGATTTCAAAGACAAGATTGGTAC
AAAGGATATAGAGCATGTCACTTGGTCTGATGATGCAAAGGATATGCTGC
AAGAGAGTTTTGGTGAGGAAAAAGATGAGCCAAAAACCGAAGCCAAAAAG
TTTCGTTCAATGGATGAGATTAAGAAAGATCTTGAAAAGAACATGGGCTG
GAATATCAAATCGGATGTTCAAATCATGCAAGATATCGTCCACCAACTAA
AAGATGAAAAAGCAACCGATAAAGAAAAATCTGTTTCACTCGATACTCTT
GAAGATTACGTGCATCAAATTGATAATGGACGTGATTTAGATAAGATTGG
TGGATTGAAAGAAGTTATTCATTTGTTGAATGACTCGAGTgaaattttac
aagaaaaagCTGCTAATGTTATTGGTGGTGCTGCACAAAGCAACAAAGAG
GTTCAAGATGCAATCTTCAAACACGGAGGCCTGAAATTCTTAATTCGAAT
GTTGGACTTAGCAAAAGAAAAGTTGACTCAGAAGAAAGGATTATATGCAG
TATCAGCTGTCATTCGTGGCAatcatcaaattcaaaatgaGTTTGTCAAA
TATGGAGGTTTAGGTTCAGTTCTTCGTATTATCAAAGAATCTGAATCAAA
TGCCTTGAAGGTGAAAGCTGTGACCATGATGTATGATCTCATTGTTGAAC
AAAATGAAATTATGCAGAAGTTGATTCAAGCTGGAAAGATAAAACCAGGA
GAACAGTCTCCATTATTCAAATCTCTCAAAGAAGCTGGTTGGTGTCATCT
ACTTGTTCCAATGCTTCAAAGTGAAGATTATGATTCGAAAGAGAAAGTCA
TTCAAGCTCTCGTCGTTTCTGTCCAATCATGTGtcaaagaactcaaaaat
gaaaaatatatttcagaGTTGACGAAGCAGTTAAAACTTCTTGAGACAAC
GATAGTAGAAGAAGATGATCAAGATTTTAAGAGCTATCTGGTATCGTTGA
AACAACAacttgctgaaaatattttgaaacaattagTTTGAATGCAGTAC
TTAACGTTATCTTGGTGTTTTGTTTGGACCTTAGTTGTTGCTGTTGCATT
TCATCATTTTTCATATGGGGAAAATGACATTGTTGTATCAGACATCAGTG
AAGGTGTTGTTGATGGCATCCCAGATGAGATGCCAATCAAGGATGGTATC
AATTCTGAGCGTTTCATACCAACCCATGAATGGCAAGTAATCAAAAGAGG
GCAAGCCATACCTGCAGGACTCCATGTTCGGATGAACTTTCAAACAGGTG
TCAAAGAAGCTAAGTTGATGGATTCTGAAAGTAGCGAGCAAAAGTCTGTG
ACAAAAGGAGAACAATTCCATGTGTCAGATTCCAGCAGTAAATCTACTGA
agagataaaaaagaaaaagaaaggacCAAAAATTATTCTTGCTGATGAAT
TACCAGATGAtacattttcaaatgaaaagatACATTACAAGAAATCACAC
TTGAAACAAGTTCTTCACGATTTCAAAGACAAGATTGGTACAAAGGATAT
AGAGCATGTCACTTGGTCTGATGATGCAAAGGATATGCTGCAAGAGAGTT
TTGGTGAGGAAAAAGATGAGCCAAAAACCGAAGCCAAAAAGTTTCGTTCA
ATGGATGAGATTAAGAAAGATCTTGAAAAGAACATGGGCTGGAATATCAA
ATCGGATGTTCAAATCATGCAAGATATCGTCCACCAACTAAAAGATGAAA
AAGCAACCGATAAAGAAAAATCTGTTTCACTCGATACTCTTGAAGATTAC
GTGCATCAAATTGATAATGGACGTGATTTAGATAAGATTGGTGGATTGAA
AGAAGTTATTCATTTGTTGAATGACTCGAGTgaaattttacaagaaaaag
CTGCTAATGTTATTGGTGGTGCTGCACAAAGCAACAAAGAGGTTCAAGAT
GCAATCTTCAAACACGGAGGCCTGAAATTCTTAATTCGAATGTTGGACTT
AGCAAAAGAAAAGTTGACTCAGAAGAAAGGATTATATGCAGTATCAGCTG
TCATTCGTGGCAatcatcaaattcaaaatgaGTTTGTCAAATATGGAGGT
TTAGGTTCAGTTCTTCGTATTATCAAAGAATCTGAATCAAATGCCTTGAA
GGTGAAAGCTGTGACCATGATGTATGATCTCATTGTTGAACAAAATGAAA
TTATGCAGAAGTTGATTCAAGCTGGAAAGATAAAACCAGGAGAACAGTCT
CCATTATTCAAATCTCTCAAAGAAGCTGGTTGGTGTCATCTACTTGTTCC
AATGCTTCAAAGTGAAGATTATGATTCGAAAGAGAAAGTCATTCAAGCTC
TCGTCGTTTCTGTCCAATCATGTGtcaaagaactcaaaaatgaaaaatat
atttcagaGTTGACGAAGCAGTTAAAACTTCTTGAGACAACGATAGTAGA
AGAAGATGATCAAGATTTTAAGAGCTATCTGGTATCGTTGAAACAACAac
ttgctgaaaatattttgaaacaattagTTTGAATGCAGTACTTAACGTTA
TCTTGGTGTTTTGTTTGGACCTTAGTTGTTGCTGTTGCATTTCATCATTT
TTCATATGGGGAAAATGACATTGTTGTATCAGACATCAGTGAAGGTGTTG
TTGATGGCATCCCAGATGAGATGCCAATCAAGGATGGTATCAATTCTGAG
CGTTTCATACCAACCCATGAATGGCAAGTAATCAAAAGAGGGCAAGCCAT
ACCTGCAGGACTCCATGTTCGGATGAACTTTCAAACAGGTGTCAAAGAAG
CTAAGTTGATGGATTCTGAAAGTAGCGAGCAAAAGTCTGTGACAAAAGGA
GAACAATTCCATGTGTCAGATTCCAGCAGTAAATCTACTGAagagataaa
aaagaaaaagaaaggacCAAAAATTATTCTTGCTGATGAATTACCAGATG
AtacattttcaaatgaaaagatACATTACAAGAAATCACACTTGAAACAA
GTTCTTCACGATTTCAAAGACAAGATTGGTACAAAGGATATAGAGCATGT
CACTTGGTCTGATGATGCAAAGGATATGCTGCAAGAGAGTTTTGGTGAGG
AAAAAGATGAGCCAAAAACCGAAGCCAAAAAGTTTCGTTCAATGGATGAG
ATTAAGAAAGATCTTGAAAAGAACATGGGCTGGAATATCAAATCGGATGT
TCAAATCATGCAAGATATCGTCCACCAACTAAAAGATGAAAAAGCAACCG
ATAAAGAAAAATCTGTTTCACTCGATACTCTTGAAGATTACGTGCATCAA
ATTGATAATGGACGTGATTTAGATAAGATTGGTGGATTGAAAGAAGTTAT
TCATTTGTTGAATGACTCGAGTgaaattttacaagaaaaagCTGCTAATG
TTATTGGTGGTGCTGCACAAAGCAACAAAGAGGTTCAAGATGCAATCTTC
AAACACGGAGGCCTGAAATTCTTAATTCGAATGTTGGACTTAGCAAAAGA
AAAGTTGACTCAGAAGAAAGGATTATATGCAGTATCAGCTGTCATTCGTG
GCAatcatcaaattcaaaatgaGTTTGTCAAATATGGAGGTTTAGGTTCA
GTTCTTCGTATTATCAAAGAATCTGAATCAAATGCCTTGAAGGTGAAAGC
TGTGACCATGATGTATGATCTCATTGTTGAACAAAATGAAATTATGCAGA
AGTTGATTCAAGCTGGAAAGATAAAACCAGGAGAACAGTCTCCATTATTC
AAATCTCTCAAAGAAGCTGGTTGGTGTCATCTACTTGTTCCAATGCTTCA
AAGTGAAGATTATGATTCGAAAGAGAAAGTCATTCAAGCTCTCGTCGTTT
CTGTCCAATCATGTGtcaaagaactcaaaaatgaaaaatatatttcagaG
TTGACGAAGCAGTTAAAACTTCTTGAGACAACGATAGTAGAAGAAGATGA
TCAAGATTTTAAGAGCTATCTGGTATCGTTGAAACAACAacttgctgaaa
atattttgaaacaattagTTTGAATGCAGTACTTAACGTTATCTTGGTGT
TTTGTTTGGACCTTAGTTGTTGCTGTTGCATTTCATCATTTTTCATATGG
GGAAAATGACATTGTTGTATCAGACATCAGTGAAGGTGTTGTTGATGGCA
TCCCAGATGAGATGCCAATCAAGGATGGTATCAATTCTGAGCGTTTCATA
CCAACCCATGAATGGCAAGTAATCAAAAGAGGGCAAGCCATACCTGCAGG
ACTCCATGTTCGGATGAACTTTCAAACAGGTGTCAAAGAAGCTAAGTTGA
TGGATTCTGAAAGTAGCGAGCAAAAGTCTGTGACAAAAGGAGAACAATTC
CATGTGTCAGATTCCAGCAGTAAATCTACTGAagagataaaaaagaaaaa
gaaaggacCAAAAATTATTCTTGCTGATGAATTACCAGATGAtacatttt
caaatgaaaagatACATTACAAGAAATCACACTTGAAACAAGTTCTTCAC
GATTTCAAAGACAAGATTGGTACAAAGGATATAGAGCATGTCACTTGGTC
TGATGATGCAAAGGATATGCTGCAAGAGAGTTTTGGTGAGGAAAAAGATG
AGCCAAAAACCGAAGCCAAAAAGTTTCGTTCAATGGATGAGATTAAGAAA
GATCTTGAAAAGAACATGGGCTGGAATATCAAATCGGATGTTCAAATCAT
GCAAGATATCGTCCACCAACTAAAAGATGAAAAAGCAACCGATAAAGAAA
AATCTGTTTCACTCGATACTCTTGAAGATTACGTGCATCAAATTGATAAT
GGACGTGATTTAGATAAGATTGGTGGATTGAAAGAAGTTATTCATTTGTT
GAATGACTCGAGTgaaattttacaagaaaaagCTGCTAATGTTATTGGTG
GTGCTGCACAAAGCAACAAAGAGGTTCAAGATGCAATCTTCAAACACGGA
GGCCTGAAATTCTTAATTCGAATGTTGGACTTAGCAAAAGAAAAGTTGAC
TCAGAAGAAAGGATTATATGCAGTATCAGCTGTCATTCGTGGCAatcatc
aaattcaaaatgaGTTTGTCAAATATGGAGGTTTAGGTTCAGTTCTTCGT
ATTATCAAAGAATCTGAATCAAATGCCTTGAAGGTGAAAGCTGTGACCAT
GATGTATGATCTCATTGTTGAACAAAATGAAATTATGCAGAAGTTGATTC
AAGCTGGAAAGATAAAACCAGGAGAACAGTCTCCATTATTCAAATCTCTC
AAAGAAGCTGGTTGGTGTCATCTACTTGTTCCAATGCTTCAAAGTGAAGA
TTATGATTCGAAAGAGAAAGTCATTCAAGCTCTCGTCGTTTCTGTCCAAT
CATGTGtcaaagaactcaaaaatgaaaaatatatttcagaGTTGACGAAG
CAGTTAAAACTTCTTGAGACAACGATAGTAGAAGAAGATGATCAAGATTT
TAAGAGCTATCTGGTATCGTTGAAACAACAacttgctgaaaatattttga
aacaattagTTTGAATGCAGTACTTAACGTTATCTTGGTGTTTTGTTTGG
ACCTTAGTTGTTGCTGTTGCATTTCATCATTTTTCATATGGGGAAAATGA
CATTGTTGTATCAGACATCAGTGAAGGTGTTGTTGATGGCATCCCAGATG
AGATGCCAATCAAGGATGGTATCAATTCTGAGCGTTTCATACCAACCCAT
GAATGGCAAGTAATCAAAAGAGGGCAAGCCATACCTGCAGGACTCCATGT
TCGGATGAACTTTCAAACAGGTGTCAAAGAAGCTAAGTTGATGGATTCTG
AAAGTAGCGAGCAAAAGTCTGTGACAAAAGGAGAACAATTCCATGTGTCA
GATTCCAGCAGTAAATCTACTGAagagataaaaaagaaaaagaaaggacC
AAAAATTATTCTTGCTGATGAATTACCAGATGAtacattttcaaatgaaa
agatACATTACAAGAAATCACACTTGAAACAAGTTCTTCACGATTTCAAA
GACAAGATTGGTACAAAGGATATAGAGCATGTCACTTGGTCTGATGATGC
AAAGGATATGCTGCAAGAGAGTTTTGGTGAGGAAAAAGATGAGCCAAAAA
CCGAAGCCAAAAAGTTTCGTTCAATGGATGAGATTAAGAAAGATCTTGAA
AAGAACATGGGCTGGAATATCAAATCGGATGTTCAAATCATGCAAGATAT
CGTCCACCAACTAAAAGATGAAAAAGCAACCGATAAAGAAAAATCTGTTT
CACTCGATACTCTTGAAGATTACGTGCATCAAATTGATAATGGACGTGAT
TTAGATAAGATTGGTGGATTGAAAGAAGTTATTCATTTGTTGAATGACTC
GAGTgaaattttacaagaaaaagCTGCTAATGTTATTGGTGGTGCTGCAC
AAAGCAACAAAGAGGTTCAAGATGCAATCTTCAAACACGGAGGCCTGAAA
TTCTTAATTCGAATGTTGGACTTAGCAAAAGAAAAGTTGACTCAGAAGAA
AGGATTATATGCAGTATCAGCTGTCATTCGTGGCAatcatcaaattcaaa
atgaGTTTGTCAAATATGGAGGTTTAGGTTCAGTTCTTCGTATTATCAAA
GAATCTGAATCAAATGCCTTGAAGGTGAAAGCTGTGACCATGATGTATGA
TCTCATTGTTGAACAAAATGAAATTATGCAGAAGTTGATTCAAGCTGGAA
AGATAAAACCAGGAGAACAGTCTCCATTATTCAAATCTCTCAAAGAAGCT
GGTTGGTGTCATCTACTTGTTCCAATGCTTCAAAGTGAAGATTATGATTC
GAAAGAGAAAGTCATTCAAGCTCTCGTCGTTTCTGTCCAATCATGTGtca
aagaactcaaaaatgaaaaatatatttcagaGTTGACGAAGCAGTTAAAA
CTTCTTGAGACAACGATAGTAGAAGAAGATGATCAAGATTTTAAGAGCTA
TCTGGTATCGTTGAAACAACAacttgctgaaaatattttgaaacaattag
TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007178XLOC_007178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012792-exon-sc0000156-1491911889:300871..301313TCONS_00012792-exon-sc0000156-1491911889:300871..301313Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1510915933:300871..301313TCONS_00012792-exon-sc0000156-1510915933:300871..301313Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1575043694:300871..301313TCONS_00012792-exon-sc0000156-1575043694:300871..301313Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1491911889:301514..302020TCONS_00012792-exon-sc0000156-1491911889:301514..302020Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1510915933:301514..302020TCONS_00012792-exon-sc0000156-1510915933:301514..302020Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1575043694:301514..302020TCONS_00012792-exon-sc0000156-1575043694:301514..302020Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1491911889:302206..302521TCONS_00012792-exon-sc0000156-1491911889:302206..302521Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1510915933:302206..302521TCONS_00012792-exon-sc0000156-1510915933:302206..302521Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1575043694:302206..302521TCONS_00012792-exon-sc0000156-1575043694:302206..302521Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1491911889:302799..303113TCONS_00012792-exon-sc0000156-1491911889:302799..303113Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1510915933:302799..303113TCONS_00012792-exon-sc0000156-1510915933:302799..303113Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1575043694:302799..303113TCONS_00012792-exon-sc0000156-1575043694:302799..303113Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1491911889:303537..305048TCONS_00012792-exon-sc0000156-1491911889:303537..305048Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1510915933:303537..305048TCONS_00012792-exon-sc0000156-1510915933:303537..305048Clytia hemisphaericaexon
TCONS_00012792-exon-sc0000156-1575043694:303537..305048TCONS_00012792-exon-sc0000156-1575043694:303537..305048Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012792-proteinTCONS_00012792-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:300871..305048 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.28769	9.2249	4.88889	4.8239	59.6719	40.5859	23.8974	23.0684	10.159	20.506	9.72125	13.4689	9.58859	6.52528	11.0646	16.1019	10.8508	13.507	7.75457	9.79773	7.5645	5.51714	13.2585	16.4779	12.3888	12.318	13.1738	7.99283	16.3572	16.109
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013918Nucleotide_exch_fac_Fes1
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
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BLAST of TCONS_00012792 vs. Swiss-Prot (Human)
Match: SIL1 (Nucleotide exchange factor SIL1 OS=Homo sapiens GN=SIL1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 9.097e-48
Identity = 122/395 (30.89%), Postives = 204/395 (51.65%), Query Frame = 2 
Query:  542 ERFIPTHEWQVIKRGQAIPAGLHVRMNFQTGVKEAKLMDSESSEQKSVTKGEQFHVXXXXXXXXXXXXXXXXXXXXXLADELPDDTFSNEKIHYKKSHLKQVLHDFKDKIGTKDIEHVTWSDDAKDMLQESFGEEKDEPKTEAKKFRSMDEIKKDLEKNMGWNIKSDVQIMQDIVHQLKDEKATDKEKSVSLDTLEDYVHQIDNGRDLDKIGGLKEVIHLLNDSSEILQEKAANVIGGAAQSNKEVQDAIFKHGGLKFLIRMLDLAKEKLTQKKGLYAVSAVIRGNHQIQNEFVKYGGLGSVLRIIKESESNALKVKAVTMMYDLIV------EQNEIMQKLIQAGKIKPGEQSPLFKSLKEAGWCHLLVPMLQSEDYDSKEKVIQALVVSVQSC 1708
            E F PTHEWQ ++ GQA+PAG HVR+N QTG +EAKL   +    ++  KG++  ++ ++                                 Y    LK  L  FK+                 +M  ES  E+K       + FR ++E+KKD ++ +   I++D+QIM  ++++     ++ +EK  +L  LE YVHQ+DN +DL   GGL+ VI+ LN +  +++E AA V+G A  SN +VQ    + G L+ L+ +L   +    +KK L+A+ +++R     Q +F+K GGL  +  +++E  +  L V+ VT++YDL+       E+ E+ Q++    K++   Q  L   L E GWC +   +L   ++D++EKV+Q L V + +C
Sbjct:   68 EVFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKLQYEDKF--RNNLKGKRLDINTNT---------------------------------YTSQDLKSALAKFKE---------------GAEM--ESSKEDKARQAEVKRLFRPIEELKKDFDE-LNVVIETDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGGLQVLRTLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEM-SPEKLQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQTLGVLLTTC 408
The following BLAST results are available for this feature:
BLAST of TCONS_00012792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIL19.097e-4830.89Nucleotide exchange factor SIL1 OS=Homo sapiens GN... [more]
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