TCONS_00012998-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012998-protein
Unique NameTCONS_00012998-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length181

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012998-protein ID=TCONS_00012998-protein|Name=TCONS_00012998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MGAFQSLFKNLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF
NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN
EAKEELNRMLNEDELRDAALLVFANKQDLPNAMNAAEVTDKLGLHQIRNR
SWYIQATCATSGDGLYEGLDWLSNELKKRKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007286XLOC_007286Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012998TCONS_00012998Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..116
NoneNo IPR availableSMARTSM00178sar_sub_1coord: 1..176
e-value: 5.6E-27
score: 105.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 17..179
e-value: 8.3E-4
score: -62.2
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..180
e-value: 5.8E-134
score: 461.0
NoneNo IPR availableGENE3D3.40.50.300coord: 1..181
e-value: 2.7E-52
score: 176.2
NoneNo IPR availableCDDcd04150Arf1_5_likecoord: 17..175
e-value: 1.42016E-123
score: 347.087
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 73..98
score: 35.07
coord: 118..139
score: 31.28
coord: 18..41
score: 52.45
coord: 46..70
score: 33.65
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 4..175
e-value: 7.7E-81
score: 269.6
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 15..148
e-value: 1.5E-24
score: 84.6
IPR024156Small GTPase superfamily, ARF typePROSITEPS51417ARFcoord: 10..176
score: 25.794
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..179

Blast
[Close]
BLAST of TCONS_00012998-protein vs. Swiss-Prot (Human)
Match: ARF1 (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 1.115e-120
Identity = 161/177 (90.96%), Postives = 170/177 (96.05%), Query Frame = 0 
Query:    4 FQSLFKNLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAKEELNRMLNEDELRDAALLVFANKQDLPNAMNAAEVTDKLGLHQIRNRSWYIQATCATSGDGLYEGLDWLSNELKKRK 180
            F +LFK LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA+EEL RML EDELRDA LLVFANKQDLPNAMNAAE+TDKLGLH +R+R+WYIQATCATSGDGLYEGLDWLSN+L+ +K
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00012998-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF11.115e-12090.96ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
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