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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012998 ID=TCONS_00012998|Name=TCONS_00012998|organism=Clytia hemisphaerica|type=transcript|length=1567bp ACATTTGAAAAGGACCCTGGGTTTACGTGATTTCGAAAACCCATAACAAA TAATGCATTGCGCGAAGTTTAGTTGCCCTTTCTCTTACGTGGATCTGATT CAGGAGTGTACCTGATTTGATCTACTGAAGATCACCAAATCCAAATAAAC TTTGACATTTTCTGGACTAGTCGACTAATTACAAGATGGGGGCATTTCAA TCATTATTCAAGAACCTTTTTGGAAagaaagaaatgagaattttaatgGT TGGGTTAGATGCTGCTGGTAAAACCACCATTTTATATAAACTGAAATTGG GAGAAATCGTAACAACTATTCCAACTATTGGTTTCAACGTCGAGACTGTC GAATACAAAAACATCAGTTTCACTGTATGGGATGTCGGAGGTCAAGATAA AATCCGTCCATTATGGAGACATTACTTTCAAAATACACAAGgtttaattt tCGTTGTGGATTCAAATGATAGAGAACGTGTTAATGAAGCAAAAGAAGAA TTAAATAGAATGTTGAATGAAGATGAACTAAGGGATGCTGCTCTTCTTGT CTTCGCTAACAAACAGGATTTACCAAACGCAATGAATGCCGCAGAAGTAA CTGATAAATTGGGATTACATCAAATTAGAAACCGAAGTTGGTACATTCAA GCCACTTGTGCTACTAGTGGTGACGGTTTATACGAGGGTCTTGATTGGTT ATCAAACGAATTGAAAAAGAGGAAGAACTAGataattgttttcaaatttt tcaaacagaGCTGATTGTAAAACATCTATATGGACGATCATAAAGAGACA GACGTTTTGTGTAGATAGTGAAATTGGTTCCAACCACCCCATACGGTAAC ATTGTGATGTAAAGAGGTGCATACATGGAAATTGTTGAATTATTTTATTG ATTGCTGGATAAATACTGGAGGTTATTTCAGTGATAAAAATACCTTTCAA TTAAAATACCACACATCAAACCATATCAAGGAATAGTAATATTTGGATAC ATAAATAATTAAATTGTTTTTTggaattcttatttttttgtttttgtttt tttgtacaTAATCAAATGTGTACCTATTAAAAATTCTTTTACCATTTTTT GGGTCTTTTTAGCCTTAGTCCAGTTATACATTTAAATGTTCATCATATCT GCCATACTGTGATCTCTTTTTGTACACCATCAAATTACCATAACTCTCTG GTGATAGTCCTAGTGATTTTGTTATAATTTTCCATCTTAAATCTCACTAT TTGAAGGCAACTCGCTTCTTACTGCACCAAAGTCAAAACCAATCCAGATT TTTAGTCATATTCAGGGAAGTACTTTATACTTGAATTGTAAATGGCTTAA AAGAATAAATTAAATTATACAGATATCTTTTTTCTCGCATTTGTATTTCT CTCCAAACCCACTAACAATTAAAccctttacatgtttttttttataagca agtgtatgccccttggccaggctcgtgtatgcttaagttctcaaagtaTC CAGGCATagattatgcttattatatgcttatgaatcatgcttatgattca cctcgagccaagttttt Run BLAST on NCBI protein sequence of TCONS_00012998-protein >TCONS_00012998-protein ID=TCONS_00012998-protein|Name=TCONS_00012998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MGAFQSLFKNLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN EAKEELNRMLNEDELRDAALLVFANKQDLPNAMNAAEVTDKLGLHQIRNR SWYIQATCATSGDGLYEGLDWLSNELKKRKN Run BLAST on NCBI transcript from alignment at sc0000161:33130..37493- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012998 ID=TCONS_00012998|Name=TCONS_00012998|organism=Clytia hemisphaerica|type=transcript|length=4364bp|location=Sequence derived from alignment at sc0000161:33130..37493- (Clytia hemisphaerica) ACATTTGAAAAGGACCCTGGGTTTACGTGATTTCGAAAACCCATAACAAA
TAATGCATTGCGCGAAGTTTAGTTGCCCTTTCTCTTACGTGGATCTGATT
CAGGAGTGTACCTGATTTGATCTACTGAAGATCACCAAATCCAAATAAAC
TTTGACATTTTCTGGACTAGTCGACTAATTACAAGATGGGGGCATTTCAA
TCATTATTCAAGAACCTTTTTGGAAAGAAAGAAATGAGAATTTTAATGGT
TGGGTTAGATGCTGCTGGTAAAACCACCATTTTATATAAACTGAAATTGG
GAGAAATCGTAACAACTATTCCAACTATTGGTAAGGATTAACCCTTGTAT
CATTCTTTGTTAATTTGACTATTCAGTATCCAATGAAACTGGTATAGATG
CTCAGAATTGATCATAATGACCTGTTTTAAAGGTTTAAATTAAATATCAT
GGATATCAATTTTATGAAGGTGTGGTATGGATTTTGTAATATTGTTGATA
TAGAAGGTGTTGTGTAGTACTTCCAAGTCAACCATGTGGCTGTCCCATGC
CCAAACGGTTGGCAAACGATATCATCCACCAGGATGCATCCTCTCTTATT
TTCTACTTTCCTATCATCTATCCTGATTTGGGCCATTCCAGAATTTGTCT
GTAACAGCGGGGCGGACAACACAGGATTTCCGAGGGCAAAAGTTTTCACC
AACATTCGAAATTTCCAAGGCGGGAGAAGAAAATGTATGAATTTCCTAGG
CAATTGATTAAAAAAGGCAAAAAAGAGTGGAATTTCCGATGAAAAAATTA
TTTCTGAGGCTAGATATAATTAAAAAATGCATGTCGTCCGACGGGGGTAA
CAAAAATTTTCTGGAATTGGCCCTTTTCTGACTTCCTCTAGTGTTTCTAA
CTGTTTTCTAAGTATTTTTCTGAAATTTGCCCGTACCGGTGAAATAGGTC
TCCGACCCTGGCTCATCACCAAATGCAAGCAACCTTGGTTACAAACCCAA
TACCTAACCGCTTACGTCATCGAGACACGGTAGAAAGCTGTCATTCACAA
ATACTTATAGCCTGTAACTTACAGACCTTTAATAAGAAAGCTCCCAACCA
TACCGGTGCCCCTACAGATGCCCCTAAGAAGGCCTTCGGCCTTATATTGT
GACTCTCTAGCCCTAACCCTAACGGATAATAACCGAACCCTCGTCTATGT
CTGCAGATTGAAAAATTTCACTTGCATCCTGGTGGATGATATCATCTGCC
AACCTGCCCAAACAGGGGCAGTTTATCTCATGACTTTTGAAGTGTTCGCT
TTTTGGGACGCTAAGGCTTGGGAATATTAATTTTGAGGATAGGAACCTCA
TCCTAGCGCTCTAGAAATATCCGGAGCAAAAAGTGCTGTTTTTTTCATGC
TCCGGAACATCGGAAGATTCCGGACTACTTCTGGGAACACGATTGGGAAT
TGAAAATAAATGGCCTGCTGTTTTGCAGTGCTTTATGTAGATAGTCCTTT
TAGCGGGTCCTTGGATTTCACGATACAGCCCCTCTTTTTTCAAATGAAAT
ATCTTTGTTATTATGACTCTGAGATAATAATACATTCCTGTAAACTCATA
GGAAGGGTTTGGATATTGTCTCTGTTTTATTTCGAAATTGAATTCCTGTG
CGTTCAAAATTGAAATAAGGATGGCAGGTGAAACGAATGAAAAAATTTGA
TAAAACTCCAACATTTTCGGATTTTTTTACTATAAGGTTTGTAGAAGTAA
GGAAAATTATTAGTCGGTTGGACGACGCAAACACATATTATTTGTGATCG
CTGCCTAGTTAAGGATGCAATTACACGCTAATCTCCCTTTCGGATAGTGA
TAAGCTTATAATCGCACTCATATAGAATTATAAACATTTGATAGTTGAGT
TATTGTGTGTTTCTCAATTATTCCTATATGTTTCAACCTGTTTTATTGTA
TTCTTATAAAAGAAAAATTGTACATTTGTACACCTTTTTTTGTGGTACAG
AGTGTTTTAAAAGTAAATTTAACTGTTGGTTTGGTTTTAACTGAAAAAAT
AATAATAAGTTTTAATTCAATCATTCATTTTTTTAAATCGACCAGGACCA
GTCCCTTAATATTAATTCATAATGTCCAGCAGAGTAATTTACACTATTTT
GATATCTTAAAGTGTTATTAGAAAAACTCTTTATTGAACTATTTCAGGTT
TAACCCACGTTTGGGAGTGTTCTAGCACGCATTGCTATAGTGATTTTCAA
TTGAACTATGACACAATCTTTCTTATTTCAGGTTTCAACGTCGAGACTGT
CGAATACAAAAACATCAGTTTCACTGTATGGGATGTCGGAGGTCAAGATA
AAATCCGTCCATTATGGAGACATTACTTTCAAAATACACAAGGTAAAAGC
AACATACTTACCAGCAGTGTTCTGTCACAGACAGATGCAATCTCTACAAA
TCCCAGAGAAATTGATCAACCCCTCCCTCAAAGAGCAGTATATAATCCAT
AACACAAATAGTTAAGAAGGGGGTCATTACCCACCCCCTAGTCTAGAGCA
ACCCCCACTGTAGGTTCTACCCCCTTTCATGCTGATGTGTTAAACCCCCT
CCCCTTCTAGATGAACCTCCATAGTGTCAGCCTGGGTTTAGGTCCCAGGC
AAAAATTAGGTCCCCCTGAGTTTTAAGACCTCCAAACCAGCAGGAGGGGG
CTTACACTATGGACCTCCCCTTTCTACAAGAAATTCTTACCATGCCCCCT
CGTTCTGCAATTTTCAGGACATCTCAATCTTTACCCCTCCCCCTCTTTAT
AACAGTCATCTTTAAAGGTATGCTTGTCCATTCATTTTTCAGGTTTAATT
TTCGTTGTGGATTCAAATGATAGAGAACGTGTTAATGAAGCAAAAGAAGA
ATTAAATAGAATGTTGAATGAAGATGAACTAAGGGATGCTGCTCTTCTTG
TCTTCGCTAACAAACAGGTAACAATTTTATGCCAGGCTCAACTGACTTTT
TGGTTGAGGGATCAAGAATGATCAAAACCCTTAATATTACCAATAGACGA
TATCAGCTTTACCGAATTCTCCCTGAATGATTACCCATGATGCATTGCGC
AAAAAAAATCACGGACGATAACCCAAACCCTAACAATGCATCATGGGTAA
TCATTCGGGGAGAATTCAGAAAGCCGATATCGTCTATTGTTAAAGAGTGA
TTTGTTGTTGTTAATTACACTTAGGGAACCAGACTATTACAGAAACATGA
CAATTTTGTTTTCTTGGTTTAATTCTATCAGTGTACTAAGTGTTCTGTTG
GTATTGATATGTCCTAGTGAATTTGTTGTATTGGCAGATTAAAAATATCG
CTATTTCTTTTAGGATTTACCAAACGCAATGAATGCCGCAGAAGTAACTG
ATAAATTGGGATTACATCAAATTAGAAACCGAAGTTGGTACATTCAAGCC
ACTTGTGCTACTAGTGGTGACGGTTTATACGAGGGTCTTGATTGGTTATC
AAACGAATTGAAAAAGAGGAAGAACTAGATAATTGTTTTCAAATTTTTCA
AACAGAGCTGATTGTAAAACATCTATATGGACGATCATAAAGAGACAGAC
GTTTTGTGTAGATAGTGAAATTGGTTCCAACCACCCCATACGGTAACATT
GTGATGTAAAGAGGTGCATACATGGAAATTGTTGAATTATTTTATTGATT
GCTGGATAAATACTGGAGGTTATTTCAGTGATAAAAATACCTTTCAATTA
AAATACCACACATCAAACCATATCAAGGAATAGTAATATTTGGATACATA
AATAATTAAATTGTTTTTTGGAATTCTTATTTTTTTGTTTTTGTTTTTTT
GTACATAATCAAATGTGTACCTATTAAAAATTCTTTTACCATTTTTTGGG
TCTTTTTAGCCTTAGTCCAGTTATACATTTAAATGTTCATCATATCTGCC
ATACTGTGATCTCTTTTTGTACACCATCAAATTACCATAACTCTCTGGTG
ATAGTCCTAGTGATTTTGTTATAATTTTCCATCTTAAATCTCACTATTTG
AAGGCAACTCGCTTCTTACTGCACCAAAGTCAAAACCAATCCAGATTTTT
AGTCATATTCAGGGAAGTACTTTATACTTGAATTGTAAATGGCTTAAAAG
AATAAATTAAATTATACAGATATCTTTTTTCTCGCATTTGTATTTCTCTC
CAAACCCACTAACAATTAAACCCTTTACATGTTTTTTTTTATAAGCAAGT
GTATGCCCCTTGGCCAGGCTCGTGTATGCTTAAGTTCTCAAAGTATCCAG
GCATAGATTATGCTTATTATATGCTTATGAATCATGCTTATGATTCACCT
CGAGCCAAGTTTTT Coding sequence (CDS) from alignment at sc0000161:33130..37493- >TCONS_00012998 ID=TCONS_00012998|Name=TCONS_00012998|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at sc0000161:33130..37493- (Clytia hemisphaerica) GATTTACCAAACGCAATGAATGCCGCAGAAGTAACTGATAAATTGGGATT ACATCAAATTAGAAACCGAAGTTGGTACATTCAAGCCACTTGTGCTACTA GTGGTGACGGTTTATACGAGGGTCTTGATTGGTTATCAAACGAATTGAAA AAGAGGAAGAACTAGGTTTAATTTTCGTTGTGGATTCAAATGATAGAGAA CGTGTTAATGAAGCAAAAGAAGAATTAAATAGAATGTTGAATGAAGATGA ACTAAGGGATGCTGCTCTTCTTGTCTTCGCTAACAAACAGGTTTCAACGT CGAGACTGTCGAATACAAAAACATCAGTTTCACTGTATGGGATGTCGGAG GTCAAGATAAAATCCGTCCATTATGGAGACATTACTTTCAAAATACACAA GATGGGGGCATTTCAATCATTATTCAAGAACCTTTTTGGAAAGAAAGAAA TGAGAATTTTAATGGTTGGGTTAGATGCTGCTGGTAAAACCACCATTTTA TATAAACTGAAATTGGGAGAAATCGTAACAACTATTCCAACTATTGGATT TACCAAACGCAATGAATGCCGCAGAAGTAACTGATAAATTGGGATTACAT CAAATTAGAAACCGAAGTTGGTACATTCAAGCCACTTGTGCTACTAGTGG TGACGGTTTATACGAGGGTCTTGATTGGTTATCAAACGAATTGAAAAAGA GGAAGAACTAGGTTTAATTTTCGTTGTGGATTCAAATGATAGAGAACGTG TTAATGAAGCAAAAGAAGAATTAAATAGAATGTTGAATGAAGATGAACTA AGGGATGCTGCTCTTCTTGTCTTCGCTAACAAACAGGTTTCAACGTCGAG ACTGTCGAATACAAAAACATCAGTTTCACTGTATGGGATGTCGGAGGTCA AGATAAAATCCGTCCATTATGGAGACATTACTTTCAAAATACACAAGATG GGGGCATTTCAATCATTATTCAAGAACCTTTTTGGAAAGAAAGAAATGAG AATTTTAATGGTTGGGTTAGATGCTGCTGGTAAAACCACCATTTTATATA AACTGAAATTGGGAGAAATCGTAACAACTATTCCAACTATTGGATTTACC AAACGCAATGAATGCCGCAGAAGTAACTGATAAATTGGGATTACATCAAA TTAGAAACCGAAGTTGGTACATTCAAGCCACTTGTGCTACTAGTGGTGAC GGTTTATACGAGGGTCTTGATTGGTTATCAAACGAATTGAAAAAGAGGAA GAACTAGGTTTAATTTTCGTTGTGGATTCAAATGATAGAGAACGTGTTAA TGAAGCAAAAGAAGAATTAAATAGAATGTTGAATGAAGATGAACTAAGGG ATGCTGCTCTTCTTGTCTTCGCTAACAAACAGGTTTCAACGTCGAGACTG TCGAATACAAAAACATCAGTTTCACTGTATGGGATGTCGGAGGTCAAGAT AAAATCCGTCCATTATGGAGACATTACTTTCAAAATACACAAGATGGGGG CATTTCAATCATTATTCAAGAACCTTTTTGGAAAGAAAGAAATGAGAATT TTAATGGTTGGGTTAGATGCTGCTGGTAAAACCACCATTTTATATAAACT GAAATTGGGAGAAATCGTAACAACTATTCCAACTATTGGATTTACCAAAC GCAATGAATGCCGCAGAAGTAACTGATAAATTGGGATTACATCAAATTAG AAACCGAAGTTGGTACATTCAAGCCACTTGTGCTACTAGTGGTGACGGTT TATACGAGGGTCTTGATTGGTTATCAAACGAATTGAAAAAGAGGAAGAAC TAGGTTTAATTTTCGTTGTGGATTCAAATGATAGAGAACGTGTTAATGAA GCAAAAGAAGAATTAAATAGAATGTTGAATGAAGATGAACTAAGGGATGC TGCTCTTCTTGTCTTCGCTAACAAACAGGTTTCAACGTCGAGACTGTCGA ATACAAAAACATCAGTTTCACTGTATGGGATGTCGGAGGTCAAGATAAAA TCCGTCCATTATGGAGACATTACTTTCAAAATACACAAGATGGGGGCATT TCAATCATTATTCAAGAACCTTTTTGGAAAGAAAGAAATGAGAATTTTAA TGGTTGGGTTAGATGCTGCTGGTAAAACCACCATTTTATATAAACTGAAA TTGGGAGAAATCGTAACAACTATTCCAACTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00012998-exon-sc0000161-1575043694:37164..37493 | TCONS_00012998-exon-sc0000161-1575043694:37164..37493 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1575043694:35102..35212 | TCONS_00012998-exon-sc0000161-1575043694:35102..35212 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1575043694:34527..34651 | TCONS_00012998-exon-sc0000161-1575043694:34527..34651 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1575043694:33130..34130 | TCONS_00012998-exon-sc0000161-1575043694:33130..34130 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1510915933:37164..37493 | TCONS_00012998-exon-sc0000161-1510915933:37164..37493 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1510915933:35102..35212 | TCONS_00012998-exon-sc0000161-1510915933:35102..35212 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1510915933:34527..34651 | TCONS_00012998-exon-sc0000161-1510915933:34527..34651 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1510915933:33130..34130 | TCONS_00012998-exon-sc0000161-1510915933:33130..34130 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1491911889:37164..37493 | TCONS_00012998-exon-sc0000161-1491911889:37164..37493 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1491911889:35102..35212 | TCONS_00012998-exon-sc0000161-1491911889:35102..35212 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1491911889:34527..34651 | TCONS_00012998-exon-sc0000161-1491911889:34527..34651 | Clytia hemisphaerica | exon |
TCONS_00012998-exon-sc0000161-1491911889:33130..34130 | TCONS_00012998-exon-sc0000161-1491911889:33130..34130 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000161 | supercontig | sc0000161:33130..37493 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005525 | GTP binding |
Vocabulary: Biological Process
Term | Definition |
GO:0007264 | small GTPase mediated signal transduction |
Vocabulary: Cellular Component
Term | Definition |
GO:0005622 | intracellular |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007264 |
small GTPase mediated signal transduction |
cellular_component |
GO:0005622 |
intracellular |
molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00012998 vs. Swiss-Prot (Human)
Match: ARF1 (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2) HSP 1 Score: 338.191 bits (866), Expect = 1.112e-113 Identity = 161/177 (90.96%), Postives = 170/177 (96.05%), Query Frame = 3
Query: 195 FQSLFKNLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAKEELNRMLNEDELRDAALLVFANKQDLPNAMNAAEVTDKLGLHQIRNRSWYIQATCATSGDGLYEGLDWLSNELKKRK 725
F +LFK LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA+EEL RML EDELRDA LLVFANKQDLPNAMNAAE+TDKLGLH +R+R+WYIQATCATSGDGLYEGLDWLSN+L+ +K
Sbjct: 5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
The following BLAST results are available for this feature:
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