TCONS_00013282-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013282-protein
Unique NameTCONS_00013282-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013282-protein ID=TCONS_00013282-protein|Name=TCONS_00013282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
FIAGFELQQLENEAKTVAKTMAMNTCCLCFQAFLQDGNGKYTTVLDRVFS
DVIIDGKTKEGAMLKIIRLSKVASSARGGEEVWLLADKLNADDVEVRFYT
ENKSTGRVEWEGFGDFTKQDVFKQAVLIFKTPRYEHHLESPVKVNLQLRR
KKDKTCASMPTQFTYKPDRYDQYQIGAKRKKTIPKIFTSSLQQQPKPDPS
VTLNYMNVESFQRLFNDVAAPSGTTTSSNAGASSAGGVEAPFMLFSNNLP
PSLTISKTPISATNLQQSLSSNTNQQQQQPSLQFPALTNHQRQQTPSVSS
NPSIGDSPSPIFHQDQSSLQSRPESNFTEPKLPMATNDLSTLPNDVSVDN
LNTDCFTDSFL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007421XLOC_007421Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013282TCONS_00013282Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000451NFkB/Dor
IPR011539RHD_DNA_bind_dom
IPR013783Ig-like_fold
IPR032397RHD_dimer
IPR014756Ig_E-set
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000451NF-kappa-B/DorsalPRINTSPR00057NFKBTNSCPFCTcoord: 78..98
score: 56.31
coord: 45..59
score: 37.1
coord: 116..134
score: 46.22
coord: 157..171
score: 42.03
IPR011539Rel homology domain (RHD), DNA-binding domainPFAMPF00554RHD_DNA_bindcoord: 9..55
e-value: 9.8E-8
score: 32.0
IPR011539Rel homology domain (RHD), DNA-binding domainGENE3D2.60.40.340coord: 3..57
e-value: 1.6E-9
score: 37.5
IPR011539Rel homology domain (RHD), DNA-binding domainPROSITEPS50254REL_2coord: 1..60
score: 10.367
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 62..168
e-value: 2.4E-25
score: 88.2
IPR032397Rel homology dimerisation domainPFAMPF16179RHD_dimercoord: 65..168
e-value: 1.5E-28
score: 98.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..342
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 63..192
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 6..66

Blast
[Close]
BLAST of TCONS_00013282-protein vs. Swiss-Prot (Human)
Match: NFKB2 (Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens GN=NFKB2 PE=1 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 1.947e-36
Identity = 76/180 (42.22%), Postives = 109/180 (60.56%), Query Frame = 0 
Query:    6 ELQQLENEAKTVAKTMAMNTCCLCFQAFLQDGNGKYTTVLDRVFSDVIIDGKTKEGAMLKIIRLSKVASSARGGEEVWLLADKLNADDVEVRFYTENKSTGRVEWEGFGDFTKQDVFKQAVLIFKTPRYEH-HLESPVKVNLQLRRKKDKTCASMPTQFTYKPDRYDQYQIGAKRKKTIP 184
            E ++LE EAK + K M ++   L F AFL+  +G ++  L  V S  I D K+   + LKI R+ K A S RGG+EV+LL DK+  DD+EVRFY ++++     W+ FGDF+  DV KQ  ++F+TP Y    +E PV V LQL+RK+     S   QFTY P   D+ ++  KR+K +P
Sbjct:  170 EQRELEQEAKELKKVMDLSIVRLRFSAFLRASDGSFSLPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENG----WQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDV-SDSKQFTYYPLVEDKEEVQRKRRKALP 344
The following BLAST results are available for this feature:
BLAST of TCONS_00013282-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFKB21.947e-3642.22Nuclear factor NF-kappa-B p100 subunit OS=Homo sap... [more]
back to top