TCONS_00013282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013282
Unique NameTCONS_00013282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013282 ID=TCONS_00013282|Name=TCONS_00013282|organism=Clytia hemisphaerica|type=transcript|length=1084bp
TTTATTGCAGGATTTGAGCTTCAGCAATTGGAGAATGAAGCAAAGACGGT
TGCCAAGACGATGGCTATGAACACGTGTTGTTTATGTTTCCAAGCCTTTC
TGCAAGATGGCAATGGAAAGTACACTACAGTACTGGATCGAGTCTTCTCT
GATGTTATCATCGATGGGAAAACAAAGGAAGGAGCCATGTTGAAAATCAT
TCGTTTAAGTAAAGTAGCGTCATCAGCGAGAGGAGGTGAAGAGGTCTGGT
TGCTAGCTGACAAACTCAACGCGGACGATGTGGAAGTGAGGTTTTACACG
GAGAACAAGAGCACTGGTCGAGTAGAATGGGAAGGATTCGGCGACTTCAC
CAAACAAGATGTTTTCAAACAGGCTGTCTTAATCTTCAAGACACCTCGTT
ACGAACACCATCTCGAAAGCCCAGTCAAAGTGAACTTGCAATTGAGACGA
AAGAAGGATAAAACGTGTGCTTCCATGCCAACACAATTCACCTATAAACC
CGATCGATATGACCAATACCAGATCGGAGCTAAACGCAAGAAGACAATCC
CGAAGATATTTACCAGTTCACTTCAACAACAACCAAAACCTGATCCTAGT
GTCACTCTCAATTATATGAACGTAGAAAGCTTTCAAAGGCTTTTTAACGA
CGTTGCGGCCCCTTCGGGGACAACTACATCTTCAAATGCAGGGGCGTCAT
CCGCAGGAGGGGTGGAAGCGCCTTTCATGTTGTTTTCTAACAATCTACCG
CCCTCTTTAACGATTTCGAAAACACCTATCTCAGCTACTAACCTACAACA
ATCACTCTCTTCAAATACAAatcaacaacagcaacaaccaTCTCTTCAAT
TTCCCGCCCTTACTAATCATCAACGCCAACAAACACCCTCAGTTAGTTCC
AATCCATCAATCGGAGATTCTCCATCACCAATTTTCCATCAGGATCAAAG
TTCACTTCAGTCACGGCCAGAATCAAATTTCACAGAACCAAAGCTTCCCA
TGGCAACAAATGACCTGTCTACTTTACCGAACGATGTTTCGGTGGATAAC
CTCAACACCGATTGCTTTACAGATTCGTTTCTCG
Run BLAST on NCBI

protein sequence of TCONS_00013282-protein

>TCONS_00013282-protein ID=TCONS_00013282-protein|Name=TCONS_00013282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
FIAGFELQQLENEAKTVAKTMAMNTCCLCFQAFLQDGNGKYTTVLDRVFS
DVIIDGKTKEGAMLKIIRLSKVASSARGGEEVWLLADKLNADDVEVRFYT
ENKSTGRVEWEGFGDFTKQDVFKQAVLIFKTPRYEHHLESPVKVNLQLRR
KKDKTCASMPTQFTYKPDRYDQYQIGAKRKKTIPKIFTSSLQQQPKPDPS
VTLNYMNVESFQRLFNDVAAPSGTTTSSNAGASSAGGVEAPFMLFSNNLP
PSLTISKTPISATNLQQSLSSNTNQQQQQPSLQFPALTNHQRQQTPSVSS
NPSIGDSPSPIFHQDQSSLQSRPESNFTEPKLPMATNDLSTLPNDVSVDN
LNTDCFTDSFL
Run BLAST on NCBI

transcript from alignment at sc0000164:291227..297046+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013282 ID=TCONS_00013282|Name=TCONS_00013282|organism=Clytia hemisphaerica|type=transcript|length=5820bp|location=Sequence derived from alignment at sc0000164:291227..297046+ (Clytia hemisphaerica)
TTTATTGCAGGATTTGAGCTTCAGCAATTGGAGAATGAAGCAAAGACGGT
TGCCAAGACGATGGCTATGAACACGTGTTGTTTATGTTTCCAAGCCTTTC
TGCAAGATGGCAATGGAAAGTACACTACAGTACTGGATCGAGTCTTCTCT
GATGTTATCATCGATGGGAGTATGATATTTTattaaagtctgttccaaaa
gaATAANAGTGAATTCTTGCAAAAATTTAAGGCAGTTCATGCGTACCCCG
AATTACCCCGGGCTATTTTCGGCCTAAAAACTTTTGTTATGTTATAATGA
TTTTGCATAATATCCTGGAACCACCAATAAACAAACATTCTTAAAATGGT
AGGCTTAGGATGGNTTTTTCTAAAAGAGCGATGcgttgtgggattgtttc
gggggtattacaatagaaatctcttaggaattctattgtaatactcccga
aacaatcccacaatgcatcgctgttttagaaaaatcaaaaactccgatga
GGTCTTTTGGCTGTTCGCATGTTTTGATACATTGCTGCTGAAGGAAAAGA
TATaattaaaagtaatacctcgttgaaaagataatctcAAGCGGATGATT
TTATTCAAGactttttgatgaattttgaaaatttgacttgAGGGGAATGT
ATTCCTCCTGCAGGAGAACCCACATACCGTATTGTTTTGGTTCTTTATAT
TACTTTCCATTTgaatattatattattttaagATGAGCATCAcctatccc
agctggcacacaacgttgtttcgacgtttatctaacgttatttgggcgtt
gtgaacattagatgaacgttgaaacaacgttgtgtgccagctgggatctt
TATAATACAATTGACTCTCGCTTATTTGAATTTCTATAATTCTAATCTTG
ACGTAATTCGAACTAATAAcattcgaattagcgagaatcAACAAAATTTA
GATTATTTTACTCTAAAAGAagagtgattggtgttttttaaCTGGTTTAA
CTGGTTTTTTCAACTATTCTTTTTAACGAGAATCACTTATAACTTCAACT
CAAGGGTCATTTATATGAAAAGAAGGCTTTCAATTTTTATCCCCAAACTC
TTTTGTCTCTATAGAAACAAAGGAAGGAGCCATGTTGAAAATCATTCGTT
TAAGTAAAGTAGCGTCATCAGCGAGAGGAGGTGAAGAGGTCTGGTTGCTA
GCTGACAAACTCAACGGTGAGCTATTATAAGGAAGTGTCTTCTATATTTT
AATGTAAGCTACACgatgcaatagacctttttataaattacgtcacaaac
atcattTGCCtcatattcaaacaattactatGGTGAccatgtcccttgag
acattaaataattttttttatgaatagaaattAGTTTTAATTAAATCCAC
Agagagttaatcaccatggcaataatttcaaaacgaggctagtgatgttc
gtaacgtaatttatgaagaGATCAATCTGTTAAATAGTAATTATGAAATG
AATACAATTTCTTCATTTTACTTTCCTTGATTGAGATATAAGTTACATCC
GAAACACCTATTTTTTCAACTGatattatttgtttcaatccacATTTACA
TACTCAGTCCACTTGATCGACTGATTTTTCTGGCGAAATGTCGCATCAGT
TTAATGACTTCTTCCAATTTTTTGAACTATGTTTGAATTGTTTACAGTTT
TGAGTCCGATATTTGTTTGGTtttatcatgaacatataaacgactggaca
tccatctcctttgtatttttgtagaaagcactgctagcttcgttaaaatc
ataaaatgaaacaataaattttgatggtatacctcttgggaataccttgc
taacaatgTCAAAagttcgacaaaagtctctgttgttctactcttctcaa
gtcttttatctatattataacaaagataacagaggcaaaatcatcgtcag
cttgtcaaaactcctaCTAATacttctaaattttgactcaaaagtGTGAA
TTAATTCTAGAGACTATGggattcaaattttgatattcttatgacataGG
CTTTCAACTTTGgcatactatttttttcaagtcataaataaaattatttg
agtgacaaaagtgattcaaaagtatacacgcttTTGAAATTCAGCGTTTA
AAAATGTTGATTGTATTGCAAACTTATGAAAAAATTCGAGtaattctttt
gtgaattacgagtaatgttcaagccCTATCAATCATTTCATCTAAGTAAT
TCATAGAAATAaaattgtgacggaatattatcggattttttaaaccaatt
ttgATATACAGACGGCAAcaaagctcgcttcaaagactcaatagaagata
gacgtccagtcgtNTTTGTGAATtacgagtaatgttcaagctctatcaat
cctttcaTCTAAGTAATTCATAGAAATAaaattgtgacggaatattatcg
gattttttaaaccaattttgaaatacagacggcaacgaagctcgcttcaa
agactcAATAGAAGATCCAGACGTCCAGTCGCTTAAATGTTCAtggtttt
atataatttttgtcGATTGAAAAATCGGTTTCTCAAGTGTGGCGTTTTTA
AAATGGATTCTAActgaagttttattttttccgCAGCGGACGATGTGGAA
GTGAGGTTTTACACGGAGAACAAGAGCACTGGTATACTATGCTATCTGTT
TTgagcagatgagatggagtttttataagatactttaataattgatcatt
tgaagtaataaaaatgatgcgttctttagaataagtaacaaaattgtttt
attactggttaatgaccaaccaaatcaaataagagcttgtaaaaactcca
tctcgtcccgttTTGAATCATTTGAGGTCGTTGCTACTTGATATTACGAT
AAAGAATAAAGATAAATAAATGAGTGGAAGATGCGTCTTCTAGCTATGCT
CCGCTTCTCCCTTTTCTGCCAACTTAAGCATCATTCTAGACTACGAAGGC
TATTAATCCCCTAGCGTTCTTCAGGGTCTGTCTTTTAGATGTAGCTTTAA
GGGTTCCTCTATAGCTCCTGAAGGAATCCATCCCTCTTCCTTTAGCTTTT
ATCTTAGAAATAAATTCCCTTAATTGAGGAGATGATACCGGGTAATCTAG
ATTCAGTTCAACTTCCTctcccttctcatagacccggtaggattttttca
gccaatggggataaaaataacgggctgaaactcaatggggattgatattc
tcttattttttatgaatggggatttcaattcttttgtttccatgccagaa
aattcagtggggatgggaaaaatagtaacTATTTTGAAGTGATTAGTCTA
TCTGACTATTTTTAGCGGGGACAAagattggaggataattttccaccggg
gacaatattttgccaattttcccaGTGGGAGGGGTTCCCAGTGTGTCTTG
GAGCAGGGGGTGTAACTTCCTCTCATATAGACAATCACATGCTTACTCTC
CTAAGATTCGTAATTCATGTTTTTCAGGTCGAGTAGAATGGGAAGGATTC
GGCGACTTCACCAAACAAGATGTTTTCAAACAGGTATCataatttctctt
tttaacaACAAAATTCTATCGAAGAAAATATTCCACTGTATTTGTGCTAT
CTAATTGGATTATTATGTAAAATCTTGGATTGACAGCATAGTGTGTGGTG
AAGGGACATGCACATTGAAATTTCGAAGGGTATTATTTGTATCCAATCCT
GCCTAGGCTGCACGCATTCCCTCTGATATGTTTGGACAtaaaatctatca
aaaaaaaaaaatatctccTATATATcaaaaacatatcagaggggatgcgt
acAGCCTATCCCGCCATAagaacaaagacattttttttggaTAATTATGA
AATCTTTACTAAATTCAAACGAACTCGTTTTTTCACTTTCAGGCTGTCTT
AATCTTCAAGACACCTCGTTACGAACACCATCTCGAAAGCCCAGTCAAAG
TGAACTTGCAATTGAGACGAAAGAAGGATAAAACGTGTGCTTCCATGCCA
ACACAATTCACCTATAAACCCGATCGATATGGTaagtttctatttttatt
tagttggGTTGCAGGTAGACGATGTCATTGGGAAGGCGGGAAGGCGGGAA
AATAttgcgttatggcggtatacggaaaaaaaattcgcGGGAGAGTTTCA
AAGaaagactggcaaactctaccgactgtaaaaactcttttcggcaaaaa
acccGTTTAATTTTTTCCGGCTTTGGGcgtatttcttagatagtgatttg
ccttagactatagcatagtctaagtTGCAGGAGGCTTCGATGctcatttt
cgcaactataactgctttcaatgagcgccccgtcaaCACCTTGGACTGGC
TACCCCTCGCATTGTATAggttgacccgggtgaaggttcattcacttggc
aagtgaaccgctgcgagtgggaatcgaacctcagtcacTTGTGCTGCAAC
CAATGCCAATGATCACTCTACCACAGCGGTTACTCTGCATCACAGAccta
tattttttctttgaaccGACCGGGAGCTACTACACAGGTTCTAAAATGAA
ACATCTTGACAGTGATTTAGTGCAATCTTTATTTAAATGAGCGCTTTGAC
ATAATGCAACCAGGTCTGTCATGtacacacaaaaaaaaatctaaaactag
ATTAACTCACACTCAGAACAAACACGATCTCAATAGTAAGCTCGCCAATT
CATTTTCTTTCGATAGTATGTCATGAGTTAAGTTTGAATCACAAACCAAT
TATTAAAGCTTTTCGACTTTTATATTAGTCTTCCCGTTTCATAgcagaca
catattttatatcagaCCGGTGTCCCCAATTGTTATATTGTATTCGATTT
TGtgctgaaaatccaaaaaatgctttcttttCCGTCTTTCTGGCCAATCA
ATTCAAGGTgaaaccaatcttgctccacatccgtgtcaattcaatatcaa
taaGTTTGTAATTTGAAATTGGTGAGTAAGAAAACAAACttattgatatt
gaattgacacggatgtggagcaagattggtcagaaataggaggaagtaaa
acatttttttgcttatatcagcacaatataacaataggcagacactgtcc
tgatatgaaacatgtacCTGATATGagacgggaacacttatgtgaaaaca
aaaccttaaaaaataatgatttttttttgctctttgTACAATTTCAGACC
AATACCAGATCGGAGCTAAACGCAAGAAGACAATCCCGAAGATATTTACC
AGTTCACTTCAACAACAACCAAAACCTGATCCTAGTGTCACTCTCAATTA
TATGAACGTAGAAAGCTTTCAAAGGCTTTTTAACGACGTTGCGGCCCCTT
CGGGGACAACTACATCTTCAAATGCAGGGGCGTCATCCGCAGGAGGGGTG
GAAGCGCCTTTCATGTTGTTTTCTAACAATCTACCGCCCTCTTTAACGAT
TTCGAAAACACCTATCTCAGCTACTAACCTACAACAATCACTCTCTTCAA
ATACAAatcaacaacagcaacaaccaTCTCTTCAATTTCCCGCCCTTACT
AATCATCAACGCCAACAAACACCCTCAGTTAGTTCCAATCCATCAATCGG
AGATTCTCCATCACCAATTTTCCATCAGGATCAAAGTTCACTTCAGTCAC
GGCCAGAATCAAATTTCACAGAACCAAAGCTTCCCATGGCAACAAATGAC
CTGTCTACTTTACCGAACGATGTTTCGGTGGATAACCTCAACACCGATTG
CTTTACAGATTCGTTTCTCG

Coding sequence (CDS) from alignment at sc0000164:291227..297046+

>TCONS_00013282 ID=TCONS_00013282|Name=TCONS_00013282|organism=Clytia hemisphaerica|type=CDS|length=6498bp|location=Sequence derived from alignment at sc0000164:291227..297046+ (Clytia hemisphaerica)
TTTATTGCAGGATTTGAGCTTCAGCAATTGGAGAATGAAGCAAAGACGGT
TGCCAAGACGATGGCTATGAACACGTGTTGTTTATGTTTCCAAGCCTTTC
TGCAAGATGGCAATGGAAAGTACACTACAGTACTGGATCGAGTCTTCTCT
GATGTTATCATCGATGGGAAAACAAAGGAAGGAGCCATGTTGAAAATCAT
TCGTTTAAGTAAAGTAGCGTCATCAGCGAGAGGAGGTGAAGAGGTCTGGT
TGCTAGCTGACAAACTCAACGCGGACGATGTGGAAGTGAGGTTTTACACG
GAGAACAAGAGCACTGGTCGAGTAGAATGGGAAGGATTCGGCGACTTCAC
CAAACAAGATGTTTTCAAACAGGCTGTCTTAATCTTCAAGACACCTCGTT
ACGAACACCATCTCGAAAGCCCAGTCAAAGTGAACTTGCAATTGAGACGA
AAGAAGGATAAAACGTGTGCTTCCATGCCAACACAATTCACCTATAAACC
CGATCGATATGACCAATACCAGATCGGAGCTAAACGCAAGAAGACAATCC
CGAAGATATTTACCAGTTCACTTCAACAACAACCAAAACCTGATCCTAGT
GTCACTCTCAATTATATGAACGTAGAAAGCTTTCAAAGGCTTTTTAACGA
CGTTGCGGCCCCTTCGGGGACAACTACATCTTCAAATGCAGGGGCGTCAT
CCGCAGGAGGGGTGGAAGCGCCTTTCATGTTGTTTTCTAACAATCTACCG
CCCTCTTTAACGATTTCGAAAACACCTATCTCAGCTACTAACCTACAACA
ATCACTCTCTTCAAATACAAatcaacaacagcaacaaccaTCTCTTCAAT
TTCCCGCCCTTACTAATCATCAACGCCAACAAACACCCTCAGTTAGTTCC
AATCCATCAATCGGAGATTCTCCATCACCAATTTTCCATCAGGATCAAAG
TTCACTTCAGTCACGGCCAGAATCAAATTTCACAGAACCAAAGCTTCCCA
TGGCAACAAATGACCTGTCTACTTTACCGAACGATGTTTCGGTGGATAAC
CTCAACACCGATTGCTTTACAGATTCGTTTCTCTTTATTGCAGGATTTGA
GCTTCAGCAATTGGAGAATGAAGCAAAGACGGTTGCCAAGACGATGGCTA
TGAACACGTGTTGTTTATGTTTCCAAGCCTTTCTGCAAGATGGCAATGGA
AAGTACACTACAGTACTGGATCGAGTCTTCTCTGATGTTATCATCGATGG
GAAAACAAAGGAAGGAGCCATGTTGAAAATCATTCGTTTAAGTAAAGTAG
CGTCATCAGCGAGAGGAGGTGAAGAGGTCTGGTTGCTAGCTGACAAACTC
AACGCGGACGATGTGGAAGTGAGGTTTTACACGGAGAACAAGAGCACTGG
TCGAGTAGAATGGGAAGGATTCGGCGACTTCACCAAACAAGATGTTTTCA
AACAGGCTGTCTTAATCTTCAAGACACCTCGTTACGAACACCATCTCGAA
AGCCCAGTCAAAGTGAACTTGCAATTGAGACGAAAGAAGGATAAAACGTG
TGCTTCCATGCCAACACAATTCACCTATAAACCCGATCGATATGACCAAT
ACCAGATCGGAGCTAAACGCAAGAAGACAATCCCGAAGATATTTACCAGT
TCACTTCAACAACAACCAAAACCTGATCCTAGTGTCACTCTCAATTATAT
GAACGTAGAAAGCTTTCAAAGGCTTTTTAACGACGTTGCGGCCCCTTCGG
GGACAACTACATCTTCAAATGCAGGGGCGTCATCCGCAGGAGGGGTGGAA
GCGCCTTTCATGTTGTTTTCTAACAATCTACCGCCCTCTTTAACGATTTC
GAAAACACCTATCTCAGCTACTAACCTACAACAATCACTCTCTTCAAATA
CAAatcaacaacagcaacaaccaTCTCTTCAATTTCCCGCCCTTACTAAT
CATCAACGCCAACAAACACCCTCAGTTAGTTCCAATCCATCAATCGGAGA
TTCTCCATCACCAATTTTCCATCAGGATCAAAGTTCACTTCAGTCACGGC
CAGAATCAAATTTCACAGAACCAAAGCTTCCCATGGCAACAAATGACCTG
TCTACTTTACCGAACGATGTTTCGGTGGATAACCTCAACACCGATTGCTT
TACAGATTCGTTTCTCTTTATTGCAGGATTTGAGCTTCAGCAATTGGAGA
ATGAAGCAAAGACGGTTGCCAAGACGATGGCTATGAACACGTGTTGTTTA
TGTTTCCAAGCCTTTCTGCAAGATGGCAATGGAAAGTACACTACAGTACT
GGATCGAGTCTTCTCTGATGTTATCATCGATGGGAAAACAAAGGAAGGAG
CCATGTTGAAAATCATTCGTTTAAGTAAAGTAGCGTCATCAGCGAGAGGA
GGTGAAGAGGTCTGGTTGCTAGCTGACAAACTCAACGCGGACGATGTGGA
AGTGAGGTTTTACACGGAGAACAAGAGCACTGGTCGAGTAGAATGGGAAG
GATTCGGCGACTTCACCAAACAAGATGTTTTCAAACAGGCTGTCTTAATC
TTCAAGACACCTCGTTACGAACACCATCTCGAAAGCCCAGTCAAAGTGAA
CTTGCAATTGAGACGAAAGAAGGATAAAACGTGTGCTTCCATGCCAACAC
AATTCACCTATAAACCCGATCGATATGACCAATACCAGATCGGAGCTAAA
CGCAAGAAGACAATCCCGAAGATATTTACCAGTTCACTTCAACAACAACC
AAAACCTGATCCTAGTGTCACTCTCAATTATATGAACGTAGAAAGCTTTC
AAAGGCTTTTTAACGACGTTGCGGCCCCTTCGGGGACAACTACATCTTCA
AATGCAGGGGCGTCATCCGCAGGAGGGGTGGAAGCGCCTTTCATGTTGTT
TTCTAACAATCTACCGCCCTCTTTAACGATTTCGAAAACACCTATCTCAG
CTACTAACCTACAACAATCACTCTCTTCAAATACAAatcaacaacagcaa
caaccaTCTCTTCAATTTCCCGCCCTTACTAATCATCAACGCCAACAAAC
ACCCTCAGTTAGTTCCAATCCATCAATCGGAGATTCTCCATCACCAATTT
TCCATCAGGATCAAAGTTCACTTCAGTCACGGCCAGAATCAAATTTCACA
GAACCAAAGCTTCCCATGGCAACAAATGACCTGTCTACTTTACCGAACGA
TGTTTCGGTGGATAACCTCAACACCGATTGCTTTACAGATTCGTTTCTCT
TTATTGCAGGATTTGAGCTTCAGCAATTGGAGAATGAAGCAAAGACGGTT
GCCAAGACGATGGCTATGAACACGTGTTGTTTATGTTTCCAAGCCTTTCT
GCAAGATGGCAATGGAAAGTACACTACAGTACTGGATCGAGTCTTCTCTG
ATGTTATCATCGATGGGAAAACAAAGGAAGGAGCCATGTTGAAAATCATT
CGTTTAAGTAAAGTAGCGTCATCAGCGAGAGGAGGTGAAGAGGTCTGGTT
GCTAGCTGACAAACTCAACGCGGACGATGTGGAAGTGAGGTTTTACACGG
AGAACAAGAGCACTGGTCGAGTAGAATGGGAAGGATTCGGCGACTTCACC
AAACAAGATGTTTTCAAACAGGCTGTCTTAATCTTCAAGACACCTCGTTA
CGAACACCATCTCGAAAGCCCAGTCAAAGTGAACTTGCAATTGAGACGAA
AGAAGGATAAAACGTGTGCTTCCATGCCAACACAATTCACCTATAAACCC
GATCGATATGACCAATACCAGATCGGAGCTAAACGCAAGAAGACAATCCC
GAAGATATTTACCAGTTCACTTCAACAACAACCAAAACCTGATCCTAGTG
TCACTCTCAATTATATGAACGTAGAAAGCTTTCAAAGGCTTTTTAACGAC
GTTGCGGCCCCTTCGGGGACAACTACATCTTCAAATGCAGGGGCGTCATC
CGCAGGAGGGGTGGAAGCGCCTTTCATGTTGTTTTCTAACAATCTACCGC
CCTCTTTAACGATTTCGAAAACACCTATCTCAGCTACTAACCTACAACAA
TCACTCTCTTCAAATACAAatcaacaacagcaacaaccaTCTCTTCAATT
TCCCGCCCTTACTAATCATCAACGCCAACAAACACCCTCAGTTAGTTCCA
ATCCATCAATCGGAGATTCTCCATCACCAATTTTCCATCAGGATCAAAGT
TCACTTCAGTCACGGCCAGAATCAAATTTCACAGAACCAAAGCTTCCCAT
GGCAACAAATGACCTGTCTACTTTACCGAACGATGTTTCGGTGGATAACC
TCAACACCGATTGCTTTACAGATTCGTTTCTCTTTATTGCAGGATTTGAG
CTTCAGCAATTGGAGAATGAAGCAAAGACGGTTGCCAAGACGATGGCTAT
GAACACGTGTTGTTTATGTTTCCAAGCCTTTCTGCAAGATGGCAATGGAA
AGTACACTACAGTACTGGATCGAGTCTTCTCTGATGTTATCATCGATGGG
AAAACAAAGGAAGGAGCCATGTTGAAAATCATTCGTTTAAGTAAAGTAGC
GTCATCAGCGAGAGGAGGTGAAGAGGTCTGGTTGCTAGCTGACAAACTCA
ACGCGGACGATGTGGAAGTGAGGTTTTACACGGAGAACAAGAGCACTGGT
CGAGTAGAATGGGAAGGATTCGGCGACTTCACCAAACAAGATGTTTTCAA
ACAGGCTGTCTTAATCTTCAAGACACCTCGTTACGAACACCATCTCGAAA
GCCCAGTCAAAGTGAACTTGCAATTGAGACGAAAGAAGGATAAAACGTGT
GCTTCCATGCCAACACAATTCACCTATAAACCCGATCGATATGACCAATA
CCAGATCGGAGCTAAACGCAAGAAGACAATCCCGAAGATATTTACCAGTT
CACTTCAACAACAACCAAAACCTGATCCTAGTGTCACTCTCAATTATATG
AACGTAGAAAGCTTTCAAAGGCTTTTTAACGACGTTGCGGCCCCTTCGGG
GACAACTACATCTTCAAATGCAGGGGCGTCATCCGCAGGAGGGGTGGAAG
CGCCTTTCATGTTGTTTTCTAACAATCTACCGCCCTCTTTAACGATTTCG
AAAACACCTATCTCAGCTACTAACCTACAACAATCACTCTCTTCAAATAC
AAatcaacaacagcaacaaccaTCTCTTCAATTTCCCGCCCTTACTAATC
ATCAACGCCAACAAACACCCTCAGTTAGTTCCAATCCATCAATCGGAGAT
TCTCCATCACCAATTTTCCATCAGGATCAAAGTTCACTTCAGTCACGGCC
AGAATCAAATTTCACAGAACCAAAGCTTCCCATGGCAACAAATGACCTGT
CTACTTTACCGAACGATGTTTCGGTGGATAACCTCAACACCGATTGCTTT
ACAGATTCGTTTCTCTTTATTGCAGGATTTGAGCTTCAGCAATTGGAGAA
TGAAGCAAAGACGGTTGCCAAGACGATGGCTATGAACACGTGTTGTTTAT
GTTTCCAAGCCTTTCTGCAAGATGGCAATGGAAAGTACACTACAGTACTG
GATCGAGTCTTCTCTGATGTTATCATCGATGGGAAAACAAAGGAAGGAGC
CATGTTGAAAATCATTCGTTTAAGTAAAGTAGCGTCATCAGCGAGAGGAG
GTGAAGAGGTCTGGTTGCTAGCTGACAAACTCAACGCGGACGATGTGGAA
GTGAGGTTTTACACGGAGAACAAGAGCACTGGTCGAGTAGAATGGGAAGG
ATTCGGCGACTTCACCAAACAAGATGTTTTCAAACAGGCTGTCTTAATCT
TCAAGACACCTCGTTACGAACACCATCTCGAAAGCCCAGTCAAAGTGAAC
TTGCAATTGAGACGAAAGAAGGATAAAACGTGTGCTTCCATGCCAACACA
ATTCACCTATAAACCCGATCGATATGACCAATACCAGATCGGAGCTAAAC
GCAAGAAGACAATCCCGAAGATATTTACCAGTTCACTTCAACAACAACCA
AAACCTGATCCTAGTGTCACTCTCAATTATATGAACGTAGAAAGCTTTCA
AAGGCTTTTTAACGACGTTGCGGCCCCTTCGGGGACAACTACATCTTCAA
ATGCAGGGGCGTCATCCGCAGGAGGGGTGGAAGCGCCTTTCATGTTGTTT
TCTAACAATCTACCGCCCTCTTTAACGATTTCGAAAACACCTATCTCAGC
TACTAACCTACAACAATCACTCTCTTCAAATACAAatcaacaacagcaac
aaccaTCTCTTCAATTTCCCGCCCTTACTAATCATCAACGCCAACAAACA
CCCTCAGTTAGTTCCAATCCATCAATCGGAGATTCTCCATCACCAATTTT
CCATCAGGATCAAAGTTCACTTCAGTCACGGCCAGAATCAAATTTCACAG
AACCAAAGCTTCCCATGGCAACAAATGACCTGTCTACTTTACCGAACGAT
GTTTCGGTGGATAACCTCAACACCGATTGCTTTACAGATTCGTTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007421XLOC_007421Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013282-proteinTCONS_00013282-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013282-exon-sc0000164-1491911889:291227..291395TCONS_00013282-exon-sc0000164-1491911889:291227..291395Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1510915933:291227..291395TCONS_00013282-exon-sc0000164-1510915933:291227..291395Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1575043694:291227..291395TCONS_00013282-exon-sc0000164-1575043694:291227..291395Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1491911889:292341..292442TCONS_00013282-exon-sc0000164-1491911889:292341..292442Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1510915933:292341..292442TCONS_00013282-exon-sc0000164-1510915933:292341..292442Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1575043694:292341..292442TCONS_00013282-exon-sc0000164-1575043694:292341..292442Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1491911889:293863..293907TCONS_00013282-exon-sc0000164-1491911889:293863..293907Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1510915933:293863..293907TCONS_00013282-exon-sc0000164-1510915933:293863..293907Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1575043694:293863..293907TCONS_00013282-exon-sc0000164-1575043694:293863..293907Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1491911889:294754..294809TCONS_00013282-exon-sc0000164-1491911889:294754..294809Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1510915933:294754..294809TCONS_00013282-exon-sc0000164-1510915933:294754..294809Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1575043694:294754..294809TCONS_00013282-exon-sc0000164-1575043694:294754..294809Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1491911889:295169..295307TCONS_00013282-exon-sc0000164-1491911889:295169..295307Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1510915933:295169..295307TCONS_00013282-exon-sc0000164-1510915933:295169..295307Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1575043694:295169..295307TCONS_00013282-exon-sc0000164-1575043694:295169..295307Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1491911889:296474..297046TCONS_00013282-exon-sc0000164-1491911889:296474..297046Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1510915933:296474..297046TCONS_00013282-exon-sc0000164-1510915933:296474..297046Clytia hemisphaericaexon
TCONS_00013282-exon-sc0000164-1575043694:296474..297046TCONS_00013282-exon-sc0000164-1575043694:296474..297046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:291227..297046 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13529	1.2257	0.688624	0.449141	11.8106	8.64154	10.5299	12.3469	6.01345	12.6119	9.44806	6.26479	13.8335	13.6941	10.0382	16.8012	7.30505	8.61056	12.9304	14.4328	7.68362	6.99845	4.09105	6.84701	18.9801	18.2214	14.1771	18.5123	9.54061	10.4998
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000451NFkB/Dor
IPR011539RHD_DNA_bind_dom
IPR013783Ig-like_fold
IPR032397RHD_dimer
IPR014756Ig_E-set
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00013282 vs. Swiss-Prot (Human)
Match: NFKB2 (Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens GN=NFKB2 PE=1 SV=4)

HSP 1 Score: 138.272 bits (347), Expect = 2.747e-35
Identity = 76/180 (42.22%), Postives = 109/180 (60.56%), Query Frame = 1 
Query:   16 ELQQLENEAKTVAKTMAMNTCCLCFQAFLQDGNGKYTTVLDRVFSDVIIDGKTKEGAMLKIIRLSKVASSARGGEEVWLLADKLNADDVEVRFYTENKSTGRVEWEGFGDFTKQDVFKQAVLIFKTPRYEH-HLESPVKVNLQLRRKKDKTCASMPTQFTYKPDRYDQYQIGAKRKKTIP 552
            E ++LE EAK + K M ++   L F AFL+  +G ++  L  V S  I D K+   + LKI R+ K A S RGG+EV+LL DK+  DD+EVRFY ++++     W+ FGDF+  DV KQ  ++F+TP Y    +E PV V LQL+RK+     S   QFTY P   D+ ++  KR+K +P
Sbjct:  170 EQRELEQEAKELKKVMDLSIVRLRFSAFLRASDGSFSLPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENG----WQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDV-SDSKQFTYYPLVEDKEEVQRKRRKALP 344
The following BLAST results are available for this feature:
BLAST of TCONS_00013282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFKB22.747e-3542.22Nuclear factor NF-kappa-B p100 subunit OS=Homo sap... [more]
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